Wall clock time and date at job start Tue Mar 31 2020 23:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47202 * 2 1 4 4 C 1.46496 * 119.99472 * 274.05878 * 3 2 1 5 5 C 1.50700 * 109.47400 * 280.92603 * 4 3 2 6 6 H 1.08004 * 119.99394 * 3.26226 * 5 4 3 7 7 C 1.37875 * 120.00497 * 183.25954 * 5 4 3 8 8 N 1.31519 * 119.99838 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00230 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46660 * 60.00195 * 9 7 5 11 11 H 1.48493 * 109.47032 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47117 * 300.00120 * 9 7 5 13 13 S 1.65591 * 120.00325 * 94.05626 * 3 2 1 14 14 O 1.42105 * 106.40181 * 336.47086 * 13 3 2 15 15 O 1.42099 * 106.40605 * 203.55380 * 13 3 2 16 16 N 1.65598 * 107.21894 * 90.01110 * 13 3 2 17 17 C 1.46502 * 120.00174 * 65.59809 * 16 13 3 18 18 C 1.50695 * 109.46921 * 164.32595 * 17 16 13 19 19 C 1.38388 * 119.93046 * 270.02090 * 18 17 16 20 20 C 1.38336 * 120.29388 * 180.02562 * 19 18 17 21 21 C 1.37976 * 120.14314 * 359.69474 * 20 19 18 22 22 C 1.39558 * 119.85568 * 0.53828 * 21 20 19 23 23 C 1.47844 * 120.14768 * 179.76297 * 22 21 20 24 24 N 1.34782 * 119.99973 * 359.72500 * 23 22 21 25 25 O 1.21547 * 120.00414 * 179.72042 * 23 22 21 26 26 C 1.37937 * 119.92585 * 90.00622 * 18 17 16 27 27 H 1.08995 * 109.47293 * 305.05534 * 1 2 3 28 28 H 1.09000 * 109.46834 * 65.05881 * 1 2 3 29 29 H 1.09003 * 109.47083 * 185.04910 * 1 2 3 30 30 H 1.09001 * 109.47647 * 239.99605 * 2 1 3 31 31 H 1.09009 * 109.47080 * 119.99241 * 2 1 3 32 32 H 1.09005 * 109.47547 * 40.93019 * 4 3 2 33 33 H 1.09000 * 109.47269 * 160.92931 * 4 3 2 34 34 H 0.97001 * 120.00144 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99977 * 245.59704 * 16 13 3 36 36 H 1.09000 * 109.46833 * 44.32919 * 17 16 13 37 37 H 1.08990 * 109.46984 * 284.33084 * 17 16 13 38 38 H 1.08002 * 119.85040 * 0.02562 * 19 18 17 39 39 H 1.08001 * 119.92651 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.07585 * 180.27326 * 21 20 19 41 41 H 0.97007 * 119.99677 * 359.97438 * 24 23 22 42 42 H 0.97000 * 119.99935 * 179.72088 * 24 23 22 43 43 H 1.07997 * 120.07608 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1778 2.1017 -1.2656 5 6 3.4577 1.6682 -1.9326 6 1 4.0626 0.8920 -1.4874 7 6 3.8565 2.2622 -3.1112 8 7 3.1201 3.2076 -3.6531 9 14 5.4427 1.7243 -3.9384 10 1 5.3605 0.2801 -4.2744 11 1 5.6438 2.5106 -5.1819 12 1 6.5842 1.9539 -3.0167 13 16 2.3900 2.1281 1.4304 14 8 1.6491 1.4548 2.4390 15 8 2.2868 3.5252 1.1924 16 7 3.9877 1.8235 1.7418 17 6 5.0228 2.3684 0.8598 18 6 6.3616 2.2872 1.5467 19 6 6.8005 3.3399 2.3305 20 6 8.0285 3.2736 2.9640 21 6 8.8213 2.1532 2.8229 22 6 8.3869 1.0901 2.0300 23 6 9.2335 -0.1113 1.8701 24 7 10.4303 -0.1793 2.4864 25 8 8.8504 -1.0378 1.1829 26 6 7.1469 1.1637 1.3930 27 1 -0.3633 0.5902 0.8412 28 1 -0.3633 0.4334 -0.9318 29 1 -0.3633 -1.0237 0.0904 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3341 1.8794 -1.9191 33 1 2.2144 3.1736 -1.0714 34 1 3.4004 3.6253 -4.4825 35 1 4.2382 1.2843 2.5082 36 1 4.7942 3.4094 0.6313 37 1 5.0529 1.7917 -0.0645 38 1 6.1815 4.2171 2.4481 39 1 8.3654 4.0987 3.5740 40 1 9.7779 2.1007 3.3216 41 1 10.7362 0.5603 3.0345 42 1 10.9840 -0.9692 2.3847 43 1 6.8034 0.3429 0.7809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:37 Heat of formation + Delta-G solvation = -95.408753 kcal Electronic energy + Delta-G solvation = -28201.867506 eV Core-core repulsion = 24180.428784 eV Total energy + Delta-G solvation = -4021.438722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25970 -38.51257 -36.66114 -36.03128 -35.20967 -35.09609 -33.91753 -32.71785 -31.14905 -30.86433 -29.91674 -26.65136 -25.48628 -24.26282 -23.14302 -21.90986 -21.65823 -20.41720 -18.85715 -18.29177 -17.18513 -16.99406 -16.70449 -16.45912 -16.15275 -15.71162 -15.21057 -14.97486 -14.89357 -14.67397 -14.26235 -13.84563 -13.80452 -13.36736 -13.11527 -12.86418 -12.67763 -12.51287 -12.04217 -12.00287 -11.84493 -11.67687 -11.54261 -11.43905 -11.32043 -11.05574 -10.98136 -10.95035 -10.49506 -10.36945 -10.21738 -10.02815 -9.95845 -9.81147 -9.09460 -9.00010 -8.99644 -8.51013 -8.05122 -6.12741 -4.19801 0.69866 1.11186 1.41089 2.72037 3.26623 3.27176 3.32528 3.35591 3.52998 3.80642 4.19272 4.35439 4.55351 4.58485 4.74925 4.93440 5.11497 5.20058 5.23160 5.32423 5.45231 5.57482 5.66309 5.78377 5.84297 5.94687 6.01769 6.12845 6.17131 6.23048 6.36124 6.39237 6.51639 6.57766 6.69222 6.73023 6.77324 7.07619 7.28189 7.38176 7.45657 7.67757 7.84441 8.03914 8.14300 8.84800 9.46348 10.94727 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004474 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.645059 B = 6257.516535 C = 7649.497748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.542 4.542 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.786 3.214 14 O -0.999 6.999 15 O -0.981 6.981 16 N -1.127 6.127 17 C 0.152 3.848 18 C -0.093 4.093 19 C -0.074 4.074 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.147 4.147 23 C 0.564 3.436 24 N -0.854 5.854 25 O -0.536 6.536 26 C -0.041 4.041 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.400 0.600 42 H 0.404 0.596 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.084 -2.450 13.467 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.581 4.581 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.984 6.984 15 O -0.964 6.964 16 N -0.885 5.885 17 C 0.027 3.973 18 C -0.094 4.094 19 C -0.093 4.093 20 C -0.149 4.149 21 C -0.107 4.107 22 C -0.150 4.150 23 C 0.350 3.650 24 N -0.418 5.418 25 O -0.413 6.413 26 C -0.060 4.060 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.229 0.771 42 H 0.234 0.766 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.997 -2.166 13.166 16.673 hybrid contribution 1.813 -0.638 -0.286 1.943 sum 11.810 -2.804 12.880 17.699 Atomic orbital electron populations 1.22197 0.96999 1.01313 1.02302 1.20969 0.93557 0.82817 1.02227 1.57710 1.78667 1.23083 1.23837 1.19210 0.97198 0.92504 0.78966 1.21495 1.07367 1.21391 1.07872 0.91755 1.24928 0.97016 0.94701 0.96921 1.69925 1.38025 1.24809 1.19655 0.86731 0.83823 0.78863 0.79140 1.20109 1.21216 1.19826 1.01727 0.72561 0.73703 0.72656 1.93550 1.69694 1.76456 1.58661 1.93572 1.85908 1.31260 1.85666 1.56049 1.25107 1.68308 1.39012 1.20441 0.82622 1.01475 0.92755 1.20080 0.96921 0.94066 0.98376 1.21467 0.95552 0.98315 0.93981 1.21077 0.94801 0.98132 1.00875 1.21226 0.99245 0.93094 0.97091 1.19831 0.96803 0.95269 1.03087 1.18334 0.81223 0.86735 0.78702 1.43750 1.20767 1.23608 1.53709 1.90844 1.72484 1.38858 1.39066 1.21322 0.91634 0.97513 0.95545 0.92708 0.92162 0.92406 0.90012 0.91975 0.94716 0.92776 0.92491 0.76076 0.89172 0.87904 0.84959 0.85286 0.85883 0.77088 0.76551 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.28 6.01 -4.04 -0.02 2.25 16 3 N -0.99 -19.91 2.84 -115.66 -0.33 -20.24 16 4 C 0.24 5.82 5.48 -5.20 -0.03 5.79 16 5 C -0.54 -13.47 7.94 -34.44 -0.27 -13.74 16 6 H 0.06 1.54 6.74 -52.48 -0.35 1.18 16 7 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 S 2.79 53.81 6.11 -107.50 -0.66 53.15 16 14 O -1.00 -20.06 17.09 -57.17 -0.98 -21.04 16 15 O -0.98 -22.04 16.09 -57.17 -0.92 -22.96 16 16 N -1.13 -18.04 6.04 -11.66 -0.07 -18.11 16 17 C 0.15 2.52 6.28 -5.19 -0.03 2.49 16 18 C -0.09 -1.30 5.27 -104.68 -0.55 -1.85 16 19 C -0.07 -0.87 9.69 -39.49 -0.38 -1.26 16 20 C -0.13 -1.23 10.03 -39.64 -0.40 -1.62 16 21 C -0.09 -0.79 9.54 -39.19 -0.37 -1.17 16 22 C -0.15 -1.78 5.87 -104.97 -0.62 -2.39 16 23 C 0.56 7.01 8.05 -12.33 -0.10 6.91 16 24 N -0.85 -6.31 8.83 30.53 0.27 -6.04 16 25 O -0.54 -9.04 17.18 5.32 0.09 -8.95 16 26 C -0.04 -0.58 9.24 -39.18 -0.36 -0.94 16 27 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 31 H 0.06 0.97 7.64 -51.92 -0.40 0.58 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 1.43 6.83 -51.93 -0.35 1.07 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.41 5.54 8.65 -34.47 -0.30 5.24 16 36 H 0.09 1.58 7.67 -51.93 -0.40 1.18 16 37 H 0.10 1.90 5.52 -51.93 -0.29 1.61 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.65 6.41 -52.48 -0.34 0.31 16 41 H 0.40 1.70 6.86 -40.82 -0.28 1.42 16 42 H 0.40 2.46 8.93 -40.82 -0.36 2.09 16 43 H 0.14 2.17 7.65 -52.49 -0.40 1.77 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -34.05 375.35 -9.64 -43.69 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.56 Total: 9.57 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.86 Total: -6.17 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: 0.61 Total: -68.29 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -1.81 Total: -52.95 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.66 Total: 53.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.05 -9.64 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.721 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds