Wall clock time and date at job start Tue Mar 31 2020 23:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46988 * 2 1 4 4 C 1.46502 * 119.99953 * 274.99788 * 3 2 1 5 5 C 1.50700 * 109.46636 * 280.88340 * 4 3 2 6 6 H 1.07996 * 120.00431 * 5.06106 * 5 4 3 7 7 C 1.37878 * 119.99507 * 185.05442 * 5 4 3 8 8 N 1.31510 * 120.00477 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47048 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47237 * 120.00504 * 9 7 5 12 12 H 1.48505 * 109.46850 * 240.00176 * 9 7 5 13 13 S 1.65602 * 120.00244 * 94.99722 * 3 2 1 14 14 O 1.42104 * 106.40072 * 340.15790 * 13 3 2 15 15 O 1.42092 * 106.40533 * 207.23771 * 13 3 2 16 16 N 1.65602 * 107.21921 * 93.69270 * 13 3 2 17 17 C 1.46507 * 119.99338 * 63.02876 * 16 13 3 18 18 C 1.50700 * 109.46752 * 162.23324 * 17 16 13 19 19 O 1.21294 * 120.00189 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00142 * 179.97438 * 18 17 16 21 21 C 1.39922 * 120.00439 * 185.15349 * 20 18 17 22 22 C 1.38870 * 120.07213 * 144.72258 * 21 20 18 23 23 C 1.38116 * 119.92856 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.07153 * 359.97438 * 23 22 21 25 25 C 1.38280 * 120.13858 * 0.04351 * 24 23 22 26 26 C 1.38113 * 120.07294 * 359.94854 * 25 24 23 27 27 H 1.09001 * 109.46480 * 60.00295 * 1 2 3 28 28 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47286 * 299.99866 * 1 2 3 30 30 H 1.08996 * 109.47679 * 239.99790 * 2 1 3 31 31 H 1.08997 * 109.46975 * 119.99751 * 2 1 3 32 32 H 1.08995 * 109.46713 * 40.88029 * 4 3 2 33 33 H 1.09002 * 109.46997 * 160.88279 * 4 3 2 34 34 H 0.96999 * 120.00517 * 179.97438 * 8 7 5 35 35 H 0.96991 * 120.00242 * 243.03163 * 16 13 3 36 36 H 1.08994 * 109.47229 * 42.23370 * 17 16 13 37 37 H 1.08994 * 109.46827 * 282.22920 * 17 16 13 38 38 H 0.97005 * 120.00062 * 5.14915 * 20 18 17 39 39 H 1.08000 * 120.03694 * 359.70577 * 22 21 20 40 40 H 1.07995 * 119.96370 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.93035 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.96545 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.03512 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4283 1.6796 -1.9524 6 1 4.0252 0.8817 -1.5361 7 6 3.8281 2.3058 -3.1139 8 7 3.1015 3.2777 -3.6207 9 14 5.4020 1.7735 -3.9678 10 1 6.0310 0.6675 -3.2019 11 1 5.0863 1.3067 -5.3417 12 1 6.3396 2.9229 -4.0388 13 16 2.4121 2.1203 1.4287 14 8 1.7555 1.3875 2.4539 15 8 2.2217 3.5137 1.2255 16 7 4.0365 1.8996 1.6633 17 6 4.9976 2.4714 0.7168 18 6 6.3626 2.5182 1.3537 19 8 6.5175 2.1133 2.4865 20 7 7.4115 3.0089 0.6642 21 6 8.6973 2.9536 1.2132 22 6 9.7962 2.7395 0.3915 23 6 11.0641 2.6860 0.9365 24 6 11.2401 2.8460 2.2988 25 6 10.1479 3.0590 3.1197 26 6 8.8774 3.1137 2.5809 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3051 1.8893 -1.9057 33 1 2.1970 3.1796 -1.0644 34 1 3.3830 3.7185 -4.4377 35 1 4.3516 1.3919 2.4273 36 1 4.6869 3.4811 0.4489 37 1 5.0361 1.8530 -0.1799 38 1 7.2750 3.4004 -0.2128 39 1 9.6590 2.6105 -0.6720 40 1 11.9190 2.5191 0.2981 41 1 12.2325 2.8034 2.7225 42 1 10.2885 3.1832 4.1832 43 1 8.0247 3.2797 3.2226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337075464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:41 Heat of formation + Delta-G solvation = -83.987362 kcal Electronic energy + Delta-G solvation = -28202.921700 eV Core-core repulsion = 24181.978247 eV Total energy + Delta-G solvation = -4020.943453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55162 -38.52716 -36.71244 -36.11797 -35.26054 -34.92640 -34.29793 -32.85363 -30.98592 -29.99305 -29.94182 -26.90782 -26.53930 -23.25780 -23.02365 -22.40807 -21.76286 -20.47463 -18.98603 -18.11990 -17.48599 -16.96714 -16.66207 -16.37743 -16.23228 -15.71411 -15.53337 -15.15640 -14.59296 -14.43848 -14.14636 -13.88022 -13.50342 -13.37084 -13.30724 -13.04565 -12.90723 -12.54116 -12.15196 -12.05216 -11.84075 -11.73645 -11.63733 -11.49086 -11.39898 -11.35624 -11.18145 -11.05366 -10.62438 -10.47820 -10.42366 -10.14003 -9.93464 -9.84019 -9.14771 -9.00298 -8.67212 -8.23527 -8.14929 -6.27306 -4.35294 1.16236 1.22482 1.32361 2.56451 2.95933 3.07417 3.19904 3.19974 3.53432 3.74296 4.10691 4.18952 4.63820 4.85130 4.86728 5.01527 5.05312 5.06865 5.31696 5.39899 5.45209 5.51888 5.57685 5.71218 5.77522 5.89687 5.92487 5.95416 6.11760 6.23854 6.28018 6.30965 6.41952 6.46619 6.63177 6.66172 6.95987 7.20239 7.26516 7.30946 7.40062 7.58686 7.70819 8.00951 8.05184 8.70523 9.30399 10.79855 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.004169 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.417646 B = 6713.860285 C = 8689.142286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.991 5.991 4 C 0.241 3.759 5 C -0.546 4.546 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.884 3.116 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 S 2.790 3.210 14 O -0.994 6.994 15 O -0.981 6.981 16 N -1.119 6.119 17 C 0.100 3.900 18 C 0.517 3.483 19 O -0.522 6.522 20 N -0.675 5.675 21 C 0.150 3.850 22 C -0.146 4.146 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.104 4.104 26 C -0.122 4.122 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.266 0.734 35 H 0.417 0.583 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.418 0.582 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.385 -1.967 6.341 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.834 5.834 4 C 0.119 3.881 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.711 3.289 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 S 2.797 3.203 14 O -0.978 6.978 15 O -0.964 6.964 16 N -0.880 5.880 17 C -0.030 4.030 18 C 0.305 3.695 19 O -0.397 6.397 20 N -0.321 5.321 21 C 0.056 3.944 22 C -0.167 4.167 23 C -0.122 4.122 24 C -0.159 4.159 25 C -0.123 4.123 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.254 0.746 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.728 -1.554 7.391 12.315 hybrid contribution 1.257 -0.516 -1.189 1.806 sum 10.985 -2.070 6.202 12.783 Atomic orbital electron populations 1.22194 0.96937 1.01424 1.02304 1.20993 0.93650 0.82713 1.02337 1.57734 1.78461 1.23128 1.24030 1.19235 0.97338 0.92413 0.79141 1.21587 1.08300 1.19508 1.09105 0.91639 1.24963 0.97104 0.94733 0.96903 1.69936 1.38035 1.22889 1.21036 0.86668 0.83341 0.78671 0.80179 1.19517 1.20739 1.20639 1.01654 0.72302 0.73681 0.72659 1.93558 1.72818 1.74014 1.57428 1.93576 1.84836 1.31923 1.86064 1.55797 1.25203 1.69940 1.37041 1.21310 0.85367 1.02991 0.93329 1.21102 0.86604 0.75741 0.86069 1.90645 1.84639 1.46589 1.17864 1.43544 1.05296 1.60650 1.22589 1.17820 0.84095 0.99404 0.93079 1.20987 0.92086 1.03598 1.00002 1.20926 0.96388 0.99638 0.95238 1.21119 0.98797 1.02189 0.93794 1.21066 0.92104 0.99264 0.99839 1.21358 0.98279 1.00465 0.94131 0.92060 0.92315 0.92775 0.90084 0.91656 0.94612 0.92667 0.92423 0.74800 0.86866 0.85544 0.74566 0.85541 0.85804 0.86182 0.85869 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.16 6.04 -4.04 -0.02 2.13 16 3 N -0.99 -19.07 2.84 -115.66 -0.33 -19.40 16 4 C 0.24 5.42 5.48 -5.19 -0.03 5.39 16 5 C -0.55 -12.48 7.53 -34.44 -0.26 -12.74 16 6 H 0.07 1.44 6.85 -52.49 -0.36 1.08 16 7 C 0.07 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.88 -22.82 13.29 55.43 0.74 -22.08 16 9 Si 0.88 18.14 29.54 -169.99 -5.02 13.12 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 13 S 2.79 53.52 6.09 -107.50 -0.65 52.86 16 14 O -0.99 -20.05 16.98 -57.17 -0.97 -21.02 16 15 O -0.98 -21.71 16.24 -57.17 -0.93 -22.64 16 16 N -1.12 -18.79 5.96 -11.66 -0.07 -18.86 16 17 C 0.10 1.61 6.47 -5.19 -0.03 1.58 16 18 C 0.52 7.97 7.75 -10.99 -0.09 7.88 16 19 O -0.52 -9.02 13.19 5.55 0.07 -8.95 16 20 N -0.67 -8.91 5.33 -9.86 -0.05 -8.96 16 21 C 0.15 1.99 6.30 -83.70 -0.53 1.46 16 22 C -0.15 -1.66 9.97 -39.39 -0.39 -2.06 16 23 C -0.10 -1.04 10.04 -39.61 -0.40 -1.43 16 24 C -0.14 -1.39 10.04 -39.55 -0.40 -1.79 16 25 C -0.10 -1.16 10.04 -39.61 -0.40 -1.55 16 26 C -0.12 -1.64 8.70 -39.39 -0.34 -1.98 16 27 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 31 H 0.07 1.00 7.51 -51.93 -0.39 0.61 16 32 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 1.37 6.90 -51.93 -0.36 1.01 16 34 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.42 6.58 7.75 -34.47 -0.27 6.31 16 36 H 0.11 1.84 7.75 -51.93 -0.40 1.44 16 37 H 0.13 2.09 5.46 -51.93 -0.28 1.81 16 38 H 0.42 4.62 8.82 -40.82 -0.36 4.26 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.14 2.04 6.22 -52.48 -0.33 1.72 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -30.49 373.18 -9.87 -40.36 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.68 Total: 13.78 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.60 Total: -3.82 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: 0.29 Total: -69.31 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.83 Total: -52.61 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Atomic # 16 Polarization: 53.52 SS G_CDS: -0.65 Total: 52.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.49 -9.87 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337075464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.627 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds