Wall clock time and date at job start Tue Mar 31 2020 23:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46988 * 2 1 4 4 C 1.46502 * 119.99953 * 274.99788 * 3 2 1 5 5 C 1.50700 * 109.46636 * 280.88340 * 4 3 2 6 6 H 1.07996 * 120.00431 * 5.06106 * 5 4 3 7 7 C 1.37878 * 119.99507 * 185.05442 * 5 4 3 8 8 N 1.31510 * 120.00477 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47048 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47237 * 120.00504 * 9 7 5 12 12 H 1.48505 * 109.46850 * 240.00176 * 9 7 5 13 13 S 1.65602 * 120.00244 * 94.99722 * 3 2 1 14 14 O 1.42104 * 106.40072 * 340.15790 * 13 3 2 15 15 O 1.42092 * 106.40533 * 207.23771 * 13 3 2 16 16 N 1.65602 * 107.21921 * 93.69270 * 13 3 2 17 17 C 1.46507 * 119.99338 * 63.02876 * 16 13 3 18 18 C 1.50700 * 109.46752 * 162.23324 * 17 16 13 19 19 O 1.21294 * 120.00189 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00142 * 179.97438 * 18 17 16 21 21 C 1.39922 * 120.00439 * 185.15349 * 20 18 17 22 22 C 1.38870 * 120.07213 * 144.72258 * 21 20 18 23 23 C 1.38116 * 119.92856 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.07153 * 359.97438 * 23 22 21 25 25 C 1.38280 * 120.13858 * 0.04351 * 24 23 22 26 26 C 1.38113 * 120.07294 * 359.94854 * 25 24 23 27 27 H 1.09001 * 109.46480 * 60.00295 * 1 2 3 28 28 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47286 * 299.99866 * 1 2 3 30 30 H 1.08996 * 109.47679 * 239.99790 * 2 1 3 31 31 H 1.08997 * 109.46975 * 119.99751 * 2 1 3 32 32 H 1.08995 * 109.46713 * 40.88029 * 4 3 2 33 33 H 1.09002 * 109.46997 * 160.88279 * 4 3 2 34 34 H 0.96999 * 120.00517 * 179.97438 * 8 7 5 35 35 H 0.96991 * 120.00242 * 243.03163 * 16 13 3 36 36 H 1.08994 * 109.47229 * 42.23370 * 17 16 13 37 37 H 1.08994 * 109.46827 * 282.22920 * 17 16 13 38 38 H 0.97005 * 120.00062 * 5.14915 * 20 18 17 39 39 H 1.08000 * 120.03694 * 359.70577 * 22 21 20 40 40 H 1.07995 * 119.96370 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.93035 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.96545 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.03512 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4283 1.6796 -1.9524 6 1 4.0252 0.8817 -1.5361 7 6 3.8281 2.3058 -3.1139 8 7 3.1015 3.2777 -3.6207 9 14 5.4020 1.7735 -3.9678 10 1 6.0310 0.6675 -3.2019 11 1 5.0863 1.3067 -5.3417 12 1 6.3396 2.9229 -4.0388 13 16 2.4121 2.1203 1.4287 14 8 1.7555 1.3875 2.4539 15 8 2.2217 3.5137 1.2255 16 7 4.0365 1.8996 1.6633 17 6 4.9976 2.4714 0.7168 18 6 6.3626 2.5182 1.3537 19 8 6.5175 2.1133 2.4865 20 7 7.4115 3.0089 0.6642 21 6 8.6973 2.9536 1.2132 22 6 9.7962 2.7395 0.3915 23 6 11.0641 2.6860 0.9365 24 6 11.2401 2.8460 2.2988 25 6 10.1479 3.0590 3.1197 26 6 8.8774 3.1137 2.5809 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3051 1.8893 -1.9057 33 1 2.1970 3.1796 -1.0644 34 1 3.3830 3.7185 -4.4377 35 1 4.3516 1.3919 2.4273 36 1 4.6869 3.4811 0.4489 37 1 5.0361 1.8530 -0.1799 38 1 7.2750 3.4004 -0.2128 39 1 9.6590 2.6105 -0.6720 40 1 11.9190 2.5191 0.2981 41 1 12.2325 2.8034 2.7225 42 1 10.2885 3.1832 4.1832 43 1 8.0247 3.2797 3.2226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337075464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:40 Heat of formation + Delta-G solvation = -105.706930 kcal Electronic energy + Delta-G solvation = -28203.863531 eV Core-core repulsion = 24181.978247 eV Total energy + Delta-G solvation = -4021.885284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64364 -39.51207 -38.35515 -37.68766 -36.92533 -36.03240 -35.64030 -34.63295 -31.82843 -31.49421 -30.92752 -28.53097 -27.88422 -24.92069 -23.95477 -23.34230 -23.25813 -21.59432 -20.47119 -19.30310 -18.80715 -18.56820 -18.32645 -17.58677 -17.40494 -17.05667 -16.88843 -16.44815 -16.15045 -15.54853 -15.38023 -14.99028 -14.81531 -14.65617 -14.57704 -14.29549 -14.10677 -13.75635 -13.64975 -13.61322 -13.32434 -13.20528 -13.15771 -13.05409 -12.72124 -12.67134 -12.62432 -12.25832 -12.19702 -12.04001 -11.69344 -11.56781 -11.44196 -11.04067 -10.55697 -10.53090 -9.86483 -9.77977 -9.17387 -8.10950 -6.25104 -0.36180 0.27903 0.46854 1.39324 1.46465 1.53126 1.61450 1.77025 2.12408 2.47031 2.56695 2.88159 3.20853 3.41792 3.49556 3.99256 4.01995 4.08360 4.22761 4.31338 4.39324 4.47176 4.52854 4.53904 4.57540 4.62483 4.66279 4.75510 5.02406 5.11743 5.18490 5.32633 5.36192 5.37750 5.44735 5.55159 5.56664 5.62053 5.80609 5.87013 6.07658 6.09074 6.16833 6.28164 6.87332 6.92179 7.44846 8.97023 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.004169 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.417646 B = 6713.860285 C = 8689.142286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.992 5.992 4 C 0.255 3.745 5 C -0.540 4.540 6 H 0.078 0.922 7 C 0.021 3.979 8 N -0.923 5.923 9 Si 0.947 3.053 10 H -0.256 1.256 11 H -0.292 1.292 12 H -0.270 1.270 13 S 2.805 3.195 14 O -1.002 7.002 15 O -1.013 7.013 16 N -1.110 6.110 17 C 0.100 3.900 18 C 0.520 3.480 19 O -0.544 6.544 20 N -0.664 5.664 21 C 0.124 3.876 22 C -0.150 4.150 23 C -0.102 4.102 24 C -0.135 4.135 25 C -0.111 4.111 26 C -0.146 4.146 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.017 0.983 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.423 0.577 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.426 0.574 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.067 -3.334 6.214 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.834 5.834 4 C 0.131 3.869 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.179 4.179 8 N -0.562 5.562 9 Si 0.772 3.228 10 H -0.180 1.180 11 H -0.219 1.219 12 H -0.196 1.196 13 S 2.813 3.187 14 O -0.986 6.986 15 O -0.996 6.996 16 N -0.873 5.873 17 C -0.029 4.029 18 C 0.308 3.692 19 O -0.422 6.422 20 N -0.311 5.311 21 C 0.030 3.970 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.154 4.154 25 C -0.129 4.129 26 C -0.166 4.166 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.260 0.740 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.265 0.735 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.426 -2.931 7.275 14.694 hybrid contribution 0.463 -0.103 -1.096 1.194 sum 12.889 -3.034 6.179 14.612 Atomic orbital electron populations 1.22187 0.95945 1.03209 1.01343 1.21268 0.94613 0.81239 1.03408 1.57625 1.78958 1.24133 1.22703 1.18856 0.96802 0.91228 0.79997 1.21794 1.08091 1.19230 1.08800 0.90429 1.25707 0.99999 0.94613 0.97623 1.70071 1.40068 1.24448 1.21644 0.85681 0.79923 0.78879 0.78338 1.18003 1.21878 1.19563 1.01024 0.72577 0.72798 0.72311 1.93539 1.73465 1.73957 1.57614 1.93535 1.85559 1.34080 1.86459 1.55506 1.24455 1.69925 1.37405 1.21296 0.85875 1.02623 0.93124 1.20859 0.86665 0.75894 0.85818 1.90637 1.84924 1.47903 1.18699 1.43404 1.05128 1.59862 1.22678 1.18046 0.84265 1.01209 0.93443 1.21242 0.92043 1.03091 1.00640 1.21346 0.96728 0.98200 0.95778 1.21511 0.99683 1.00389 0.93790 1.21324 0.91631 0.98908 1.01067 1.21347 0.98740 1.02206 0.94298 0.93097 0.89189 0.93635 0.89622 0.89885 0.96488 0.95469 0.92550 0.74010 0.87374 0.85639 0.73521 0.84042 0.82812 0.83189 0.84247 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 10.24 71.98 0.74 -4.24 16 2 C 0.12 3.87 6.04 86.38 0.52 4.39 16 3 N -0.99 -38.25 2.84 -519.84 -1.48 -39.73 16 4 C 0.25 11.68 5.48 85.63 0.47 12.15 16 5 C -0.54 -24.55 7.53 25.60 0.19 -24.36 16 6 H 0.08 3.29 6.85 -2.91 -0.02 3.27 16 7 C 0.02 1.00 5.46 84.66 0.46 1.46 16 8 N -0.92 -48.51 13.29 21.45 0.28 -48.22 16 9 Si 0.95 36.42 29.54 68.60 2.03 38.44 16 10 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 11 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 13 S 2.81 108.39 6.09 -56.49 -0.34 108.05 16 14 O -1.00 -39.98 16.98 -128.00 -2.17 -42.15 16 15 O -1.01 -46.06 16.24 -128.00 -2.08 -48.14 16 16 N -1.11 -37.24 5.96 -190.79 -1.14 -38.38 16 17 C 0.10 3.24 6.47 85.63 0.55 3.80 16 18 C 0.52 16.01 7.75 87.66 0.68 16.69 16 19 O -0.54 -18.99 13.19 -3.07 -0.04 -19.03 16 20 N -0.66 -17.20 5.33 -303.50 -1.62 -18.82 16 21 C 0.12 3.16 6.30 38.15 0.24 3.40 16 22 C -0.15 -3.06 9.97 22.39 0.22 -2.84 16 23 C -0.10 -1.70 10.04 22.25 0.22 -1.48 16 24 C -0.14 -2.25 10.04 22.29 0.22 -2.03 16 25 C -0.11 -2.29 10.04 22.25 0.22 -2.06 16 26 C -0.15 -3.87 8.70 22.39 0.19 -3.67 16 27 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.69 8.06 -2.39 -0.02 2.67 16 31 H 0.08 2.39 7.51 -2.39 -0.02 2.37 16 32 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.03 1.40 6.90 -2.39 -0.02 1.39 16 34 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.42 13.25 7.75 -96.75 -0.75 12.50 16 36 H 0.11 3.60 7.75 -2.39 -0.02 3.58 16 37 H 0.13 4.08 5.46 -2.39 -0.01 4.07 16 38 H 0.43 9.09 8.82 -92.70 -0.82 8.27 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 40 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 43 H 0.12 3.58 6.22 -2.91 -0.02 3.56 16 Total: -1.00 -65.55 373.18 -2.13 -67.68 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.51 Total: 39.07 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.94 Total: 1.22 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -3.95 Total: -145.15 kcal Atomic # 8 Polarization: -105.03 SS G_CDS: -4.29 Total: -109.32 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.34 Total: 108.05 kcal Total: -65.55 -2.13 -67.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337075464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.024 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds