Wall clock time and date at job start Tue Mar 31 2020 22:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 C 1.38254 * 120.00105 * 79.99697 * 4 2 1 6 6 C 1.38215 * 119.99945 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.00120 * 0.02562 * 6 5 4 8 8 C 1.38214 * 119.99853 * 0.02562 * 7 6 5 9 9 S 1.76197 * 119.99844 * 180.02562 * 8 7 6 10 10 N 1.65603 * 107.21752 * 89.99654 * 9 8 7 11 11 O 1.42106 * 106.40195 * 203.53514 * 9 8 7 12 12 O 1.42095 * 106.40225 * 336.45743 * 9 8 7 13 13 C 1.38214 * 119.99826 * 259.72932 * 4 2 1 14 14 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 15 15 C 1.46901 * 110.99788 * 183.95405 * 14 2 1 16 16 C 1.46901 * 110.99790 * 60.00351 * 14 2 1 17 17 C 1.50701 * 109.46921 * 189.99765 * 16 14 2 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 30 30 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 31 31 H 1.07996 * 120.00061 * 0.02562 * 5 4 2 32 32 H 1.07995 * 119.99922 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.00248 * 180.02562 * 7 6 5 34 34 H 0.97006 * 119.99878 * 149.99898 * 10 9 8 35 35 H 0.97000 * 120.00021 * 330.00015 * 10 9 8 36 36 H 1.08003 * 120.00236 * 359.97438 * 13 4 2 37 37 H 1.09001 * 109.47121 * 296.04690 * 15 14 2 38 38 H 1.09005 * 109.47342 * 56.04784 * 15 14 2 39 39 H 1.08999 * 109.46894 * 176.04703 * 15 14 2 40 40 H 1.09002 * 109.47401 * 69.99793 * 16 14 2 41 41 H 1.09001 * 109.46874 * 309.99805 * 16 14 2 42 42 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 43 43 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0667 -2.0921 1.2653 6 6 2.5280 -2.7437 2.3936 7 6 2.9545 -2.0137 3.4877 8 6 2.9191 -0.6324 3.4532 9 16 3.4633 0.2978 4.8471 10 7 5.0829 0.5794 4.6465 11 8 2.8223 1.5631 4.7602 12 8 3.3417 -0.5594 5.9738 13 6 2.4639 0.0193 2.3220 14 7 2.0197 -0.6925 -1.1994 15 6 3.4851 -0.7945 -1.1870 16 6 1.5488 -0.0263 -2.4211 17 6 1.8581 -0.8911 -3.6159 18 8 2.4156 -1.9576 -3.4645 19 7 1.5144 -0.4798 -4.8525 20 6 1.7954 -1.2667 -5.9394 21 1 2.2925 -2.2160 -5.8047 22 6 1.4415 -0.8425 -7.2143 23 7 0.8370 0.3128 -7.3782 24 14 1.8237 -1.9150 -8.6952 25 1 2.5026 -3.1566 -8.2452 26 1 0.5600 -2.2659 -9.3917 27 1 2.7128 -1.1748 -9.6262 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7340 -2.6623 0.4106 32 1 2.5552 -3.8229 2.4207 33 1 3.3153 -2.5228 4.3691 34 1 5.4847 1.3824 5.0137 35 1 5.6297 -0.0586 4.1619 36 1 2.4416 1.0988 2.2930 37 1 3.9193 0.2044 -1.2299 38 1 3.8070 -1.2915 -0.2718 39 1 3.8165 -1.3721 -2.0499 40 1 2.0520 0.9346 -2.5280 41 1 0.4723 0.1324 -2.3564 42 1 1.0682 0.3729 -4.9734 43 1 0.5896 0.6088 -8.2683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343064310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:27 Heat of formation + Delta-G solvation = -72.875853 kcal Electronic energy + Delta-G solvation = -27274.139197 eV Core-core repulsion = 23253.677575 eV Total energy + Delta-G solvation = -4020.461622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.09442 -38.52273 -37.44544 -36.72992 -36.11628 -33.97050 -33.55165 -32.29191 -31.50693 -31.26788 -29.79369 -27.87344 -24.94737 -24.44027 -23.64206 -22.76537 -20.80943 -19.62094 -19.14696 -18.19557 -17.88349 -17.67860 -17.02876 -16.39910 -16.21466 -15.79400 -15.42783 -15.00663 -14.72609 -14.65712 -14.38208 -13.96944 -13.71626 -13.67866 -13.27103 -13.03307 -12.55450 -12.49032 -12.39321 -12.36680 -12.24954 -12.21672 -11.95726 -11.68050 -11.51387 -11.41685 -11.25639 -11.11426 -10.99499 -10.80585 -10.66283 -10.37141 -10.25624 -9.54227 -9.51840 -9.08301 -8.51628 -8.02430 -7.91865 -6.44926 -3.85808 0.09528 0.59000 1.02570 2.81335 3.13570 3.17095 3.24496 3.31201 3.48006 3.85563 3.87849 4.15081 4.22923 4.49039 4.61365 4.79596 4.98841 5.07552 5.09736 5.19144 5.21608 5.25362 5.47187 5.51220 5.59104 5.60648 5.67935 5.70805 5.79059 5.83942 5.91733 5.94887 6.13378 6.18427 6.23863 6.31085 6.49771 6.60436 6.64767 7.19082 7.29963 7.52286 8.03213 8.58278 9.15001 9.51130 10.02592 10.72840 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029289 B = 0.002120 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.776560 B =13203.568096 C =13400.236484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.115 3.885 3 H 0.050 0.950 4 C -0.091 4.091 5 C -0.027 4.027 6 C -0.144 4.144 7 C -0.026 4.026 8 C -0.680 4.680 9 S 2.703 3.297 10 N -1.249 6.249 11 O -0.965 6.965 12 O -0.965 6.965 13 C -0.016 4.016 14 N -0.511 5.511 15 C 0.019 3.981 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.420 0.580 35 H 0.417 0.583 36 H 0.139 0.861 37 H 0.014 0.986 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 1.699 21.717 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.068 0.932 4 C -0.092 4.092 5 C -0.046 4.046 6 C -0.163 4.163 7 C -0.046 4.046 8 C -0.769 4.769 9 S 2.792 3.208 10 N -0.923 5.923 11 O -0.955 6.955 12 O -0.954 6.954 13 C -0.036 4.036 14 N -0.235 5.235 15 C -0.129 4.129 16 C -0.090 4.090 17 C 0.231 3.769 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.250 0.750 35 H 0.244 0.756 36 H 0.156 0.844 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.551 0.851 22.380 22.854 hybrid contribution 0.659 0.628 -1.705 1.933 sum 5.210 1.479 20.675 21.373 Atomic orbital electron populations 1.21934 0.93078 1.03259 1.02073 1.20619 0.96090 0.94845 0.87810 0.93188 1.19936 0.99752 0.94310 0.95208 1.21620 0.91302 0.94239 0.97395 1.21377 1.00758 1.00623 0.93494 1.20947 0.93699 0.91685 0.98255 1.30455 1.20547 1.06938 1.18923 1.01436 0.72315 0.73462 0.73546 1.53138 1.29286 1.35718 1.74148 1.93599 1.73836 1.41293 1.86725 1.93605 1.85413 1.68421 1.47945 1.20774 0.92119 1.00110 0.90625 1.61666 1.11318 1.50765 0.99768 1.22599 0.86456 0.99796 1.04043 1.21964 1.01551 0.95525 0.89955 1.19691 0.85210 0.88282 0.83763 1.90476 1.46478 1.24107 1.85203 1.41873 1.52685 1.20725 1.04809 1.19731 1.36092 1.02872 0.84028 0.87875 1.25263 0.96938 0.96696 0.99092 1.69620 1.40750 1.19941 1.23976 0.85807 0.78102 0.79796 0.80682 1.19241 1.20736 1.20786 0.91327 0.92057 0.91474 0.83582 0.84855 0.84339 0.74996 0.75550 0.84365 0.96697 0.92221 0.88330 0.93377 0.88814 0.77503 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.97 37.16 0.33 -1.32 16 2 C 0.11 1.42 2.28 -68.86 -0.16 1.26 16 3 H 0.05 0.58 8.00 -51.93 -0.42 0.17 16 4 C -0.09 -1.04 3.71 -104.62 -0.39 -1.43 16 5 C -0.03 -0.31 8.11 -39.58 -0.32 -0.63 16 6 C -0.14 -1.37 10.05 -39.58 -0.40 -1.77 16 7 C -0.03 -0.24 9.52 -39.58 -0.38 -0.62 16 8 C -0.68 -6.44 5.97 -39.58 -0.24 -6.67 16 9 S 2.70 23.65 6.28 -107.50 -0.68 22.97 16 10 N -1.25 -6.17 9.52 60.35 0.57 -5.59 16 11 O -0.96 -11.40 17.29 -57.17 -0.99 -12.39 16 12 O -0.96 -11.19 17.28 -57.17 -0.99 -12.18 16 13 C -0.02 -0.17 9.15 -39.58 -0.36 -0.53 16 14 N -0.51 -7.84 3.71 -237.72 -0.88 -8.73 16 15 C 0.02 0.29 8.80 60.07 0.53 0.82 16 16 C 0.04 0.70 5.26 -4.97 -0.03 0.67 16 17 C 0.45 10.06 7.51 -10.98 -0.08 9.98 16 18 O -0.58 -14.86 13.89 5.55 0.08 -14.79 16 19 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 20 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 24 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.75 6.20 -51.93 -0.32 0.42 16 31 H 0.15 1.82 7.72 -52.49 -0.41 1.41 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.00 7.62 -52.49 -0.40 0.60 16 34 H 0.42 1.40 8.96 -34.47 -0.31 1.09 16 35 H 0.42 1.24 8.96 -34.47 -0.31 0.94 16 36 H 0.14 1.30 7.60 -52.48 -0.40 0.90 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.81 6.02 -51.93 -0.31 0.50 16 39 H 0.10 1.86 5.88 -51.93 -0.31 1.55 16 40 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 41 H 0.09 1.43 5.83 -51.93 -0.30 1.13 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -35.17 368.46 -8.84 -44.01 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.43 Total: 10.85 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.73 Total: -8.02 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.36 Total: -51.70 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.90 Total: -39.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 23.65 SS G_CDS: -0.68 Total: 22.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.17 -8.84 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343064310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.866 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds