Wall clock time and date at job start Tue Mar 31 2020 22:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 C 1.38254 * 120.00105 * 79.99697 * 4 2 1 6 6 C 1.38215 * 119.99945 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.00120 * 0.02562 * 6 5 4 8 8 C 1.38214 * 119.99853 * 0.02562 * 7 6 5 9 9 S 1.76197 * 119.99844 * 180.02562 * 8 7 6 10 10 N 1.65603 * 107.21752 * 89.99654 * 9 8 7 11 11 O 1.42106 * 106.40195 * 203.53514 * 9 8 7 12 12 O 1.42095 * 106.40225 * 336.45743 * 9 8 7 13 13 C 1.38214 * 119.99826 * 259.72932 * 4 2 1 14 14 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 15 15 C 1.46901 * 110.99788 * 183.95405 * 14 2 1 16 16 C 1.46901 * 110.99790 * 60.00351 * 14 2 1 17 17 C 1.50701 * 109.46921 * 189.99765 * 16 14 2 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 14 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 30 30 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 31 31 H 1.07996 * 120.00061 * 0.02562 * 5 4 2 32 32 H 1.07995 * 119.99922 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.00248 * 180.02562 * 7 6 5 34 34 H 0.97006 * 119.99878 * 149.99898 * 10 9 8 35 35 H 0.97000 * 120.00021 * 330.00015 * 10 9 8 36 36 H 1.08003 * 120.00236 * 359.97438 * 13 4 2 37 37 H 1.09001 * 109.47121 * 296.04690 * 15 14 2 38 38 H 1.09005 * 109.47342 * 56.04784 * 15 14 2 39 39 H 1.08999 * 109.46894 * 176.04703 * 15 14 2 40 40 H 1.09002 * 109.47401 * 69.99793 * 16 14 2 41 41 H 1.09001 * 109.46874 * 309.99805 * 16 14 2 42 42 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 43 43 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0667 -2.0921 1.2653 6 6 2.5280 -2.7437 2.3936 7 6 2.9545 -2.0137 3.4877 8 6 2.9191 -0.6324 3.4532 9 16 3.4633 0.2978 4.8471 10 7 5.0829 0.5794 4.6465 11 8 2.8223 1.5631 4.7602 12 8 3.3417 -0.5594 5.9738 13 6 2.4639 0.0193 2.3220 14 7 2.0197 -0.6925 -1.1994 15 6 3.4851 -0.7945 -1.1870 16 6 1.5488 -0.0263 -2.4211 17 6 1.8581 -0.8911 -3.6159 18 8 2.4156 -1.9576 -3.4645 19 7 1.5144 -0.4798 -4.8525 20 6 1.7954 -1.2667 -5.9394 21 1 2.2925 -2.2160 -5.8047 22 6 1.4415 -0.8425 -7.2143 23 7 0.8370 0.3128 -7.3782 24 14 1.8237 -1.9150 -8.6952 25 1 2.5026 -3.1566 -8.2452 26 1 0.5600 -2.2659 -9.3917 27 1 2.7128 -1.1748 -9.6262 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7340 -2.6623 0.4106 32 1 2.5552 -3.8229 2.4207 33 1 3.3153 -2.5228 4.3691 34 1 5.4847 1.3824 5.0137 35 1 5.6297 -0.0586 4.1619 36 1 2.4416 1.0988 2.2930 37 1 3.9193 0.2044 -1.2299 38 1 3.8070 -1.2915 -0.2718 39 1 3.8165 -1.3721 -2.0499 40 1 2.0520 0.9346 -2.5280 41 1 0.4723 0.1324 -2.3564 42 1 1.0682 0.3729 -4.9734 43 1 0.5896 0.6088 -8.2683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343064310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:26 Heat of formation + Delta-G solvation = -101.633367 kcal Electronic energy + Delta-G solvation = -27275.386216 eV Core-core repulsion = 23253.677575 eV Total energy + Delta-G solvation = -4021.708641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06307 -40.07767 -38.26490 -37.99640 -36.93364 -35.90549 -34.04675 -33.38768 -33.20242 -32.27996 -30.73052 -29.30527 -26.69064 -25.58149 -24.51620 -23.78044 -21.79298 -20.88690 -20.30178 -19.82524 -18.96339 -18.33040 -17.87631 -17.66528 -17.12832 -16.83526 -16.62579 -16.25166 -16.13840 -15.85406 -15.55909 -15.44321 -15.05164 -14.81252 -14.50011 -13.99020 -13.85621 -13.47228 -13.35792 -13.29005 -13.21746 -13.18779 -13.16388 -13.08351 -12.91639 -12.57202 -12.49908 -12.42394 -12.34565 -12.11453 -11.87022 -11.70663 -11.45130 -11.28829 -10.33641 -10.28382 -9.98577 -9.87147 -9.23878 -8.45602 -5.93737 -0.60459 -0.19896 0.24295 1.36645 1.42026 1.55704 2.07223 2.16650 2.27639 2.41187 2.71735 2.80977 3.21340 3.37126 3.41079 3.68812 3.86397 4.06131 4.18340 4.20131 4.23799 4.26890 4.38284 4.46619 4.50907 4.61737 4.63335 4.69169 4.82563 4.90278 4.98057 5.00874 5.16100 5.27247 5.29124 5.32391 5.42083 5.46950 5.80386 5.89274 6.06654 6.18949 6.34929 6.62230 7.14798 7.58626 8.14313 8.72066 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029289 B = 0.002120 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.776560 B =13203.568096 C =13400.236484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.116 3.884 3 H 0.063 0.937 4 C -0.101 4.101 5 C -0.042 4.042 6 C -0.143 4.143 7 C -0.026 4.026 8 C -0.678 4.678 9 S 2.730 3.270 10 N -1.234 6.234 11 O -0.995 6.995 12 O -0.992 6.992 13 C -0.022 4.022 14 N -0.523 5.523 15 C 0.027 3.973 16 C 0.053 3.947 17 C 0.444 3.556 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.328 4.328 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.430 0.570 35 H 0.429 0.571 36 H 0.149 0.851 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.395 0.605 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 2.252 22.856 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.081 0.919 4 C -0.102 4.102 5 C -0.060 4.060 6 C -0.162 4.162 7 C -0.045 4.045 8 C -0.766 4.766 9 S 2.819 3.181 10 N -0.913 5.913 11 O -0.985 6.985 12 O -0.981 6.981 13 C -0.041 4.041 14 N -0.248 5.248 15 C -0.121 4.121 16 C -0.078 4.078 17 C 0.232 3.768 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.457 4.457 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.263 0.737 35 H 0.259 0.741 36 H 0.166 0.834 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.229 0.771 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.958 1.424 23.533 24.092 hybrid contribution 0.581 0.430 -1.948 2.078 sum 5.539 1.853 21.585 22.362 Atomic orbital electron populations 1.21939 0.92404 1.02889 1.02992 1.20681 0.96629 0.95225 0.86599 0.91869 1.19877 1.00718 0.94360 0.95263 1.21563 0.92456 0.94340 0.97678 1.21598 0.99932 1.01739 0.92911 1.21239 0.92934 0.91641 0.98697 1.30532 1.20214 1.07241 1.18601 1.00468 0.72712 0.72256 0.72693 1.52754 1.27827 1.36530 1.74151 1.93559 1.75231 1.42636 1.87025 1.93578 1.86232 1.69037 1.49278 1.20890 0.92035 1.00680 0.90533 1.61592 1.11249 1.51730 1.00228 1.22429 0.86765 0.99907 1.03002 1.21828 1.03046 0.94754 0.88165 1.20707 0.83253 0.88249 0.84610 1.90459 1.47485 1.25955 1.85920 1.41943 1.53504 1.20785 1.05137 1.19661 1.37537 1.02871 0.85670 0.90315 1.26011 0.96399 0.97884 1.01102 1.69679 1.40932 1.20800 1.24875 0.84893 0.78218 0.77962 0.77410 1.19793 1.19731 1.19719 0.92351 0.90333 0.91315 0.85307 0.82954 0.82306 0.73718 0.74095 0.83358 0.95549 0.90622 0.92236 0.91541 0.86799 0.77091 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.97 71.98 0.65 -2.41 16 2 C 0.12 2.69 2.28 44.17 0.10 2.79 16 3 H 0.06 1.31 8.00 -2.39 -0.02 1.29 16 4 C -0.10 -2.18 3.71 -19.87 -0.07 -2.25 16 5 C -0.04 -0.92 8.11 22.27 0.18 -0.73 16 6 C -0.14 -2.50 10.05 22.27 0.22 -2.28 16 7 C -0.03 -0.41 9.52 22.27 0.21 -0.20 16 8 C -0.68 -11.42 5.97 22.27 0.13 -11.29 16 9 S 2.73 42.56 6.28 -56.49 -0.35 42.20 16 10 N -1.23 -9.19 9.52 37.02 0.35 -8.84 16 11 O -0.99 -21.93 17.29 -128.00 -2.21 -24.14 16 12 O -0.99 -21.25 17.28 -128.00 -2.21 -23.47 16 13 C -0.02 -0.41 9.15 22.27 0.20 -0.21 16 14 N -0.52 -15.75 3.71 -906.01 -3.36 -19.11 16 15 C 0.03 0.82 8.80 127.69 1.12 1.94 16 16 C 0.05 1.75 5.26 85.56 0.45 2.20 16 17 C 0.44 20.47 7.51 87.66 0.66 21.13 16 18 O -0.61 -32.56 13.89 -3.07 -0.04 -32.60 16 19 N -0.58 -28.96 5.29 -306.98 -1.62 -30.58 16 20 C -0.33 -18.32 9.68 84.04 0.81 -17.50 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 23 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 24 Si 0.99 42.56 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.40 6.20 -2.39 -0.01 1.39 16 31 H 0.13 3.25 7.72 -2.91 -0.02 3.23 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.16 1.86 7.62 -2.91 -0.02 1.84 16 34 H 0.43 1.82 8.96 -96.74 -0.87 0.96 16 35 H 0.43 1.39 8.96 -96.74 -0.87 0.53 16 36 H 0.15 2.45 7.60 -2.91 -0.02 2.43 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 2.02 6.02 -2.38 -0.01 2.00 16 39 H 0.06 2.30 5.88 -2.39 -0.01 2.29 16 40 H 0.07 1.98 8.12 -2.39 -0.02 1.97 16 41 H 0.11 3.33 5.83 -2.39 -0.01 3.32 16 42 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -76.26 368.46 -3.39 -79.64 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -1.38 Total: 30.42 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.14 Total: -9.11 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -4.35 Total: -107.53 kcal Atomic # 8 Polarization: -75.74 SS G_CDS: -4.47 Total: -80.20 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 42.56 SS G_CDS: -0.35 Total: 42.20 kcal Total: -76.26 -3.39 -79.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343064310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.992 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds