Wall clock time and date at job start Tue Mar 31 2020 23:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35532 * 125.67713 * 2 1 4 4 C 1.35457 * 108.87065 * 180.02562 * 3 2 1 5 5 S 1.76196 * 126.06533 * 180.02562 * 4 3 2 6 6 N 1.65597 * 107.21992 * 90.03131 * 5 4 3 7 7 O 1.42111 * 106.39854 * 203.56852 * 5 4 3 8 8 O 1.42094 * 106.40698 * 336.48543 * 5 4 3 9 9 C 1.39841 * 107.86050 * 359.74630 * 4 3 2 10 10 C 1.37649 * 125.67717 * 180.02562 * 2 1 3 11 11 C 1.46679 * 126.23140 * 0.02562 * 10 2 1 12 12 O 1.21695 * 120.00392 * 60.27389 * 11 10 2 13 13 N 1.34775 * 119.99869 * 239.99736 * 11 10 2 14 14 C 1.46501 * 119.99981 * 175.31818 * 13 11 10 15 15 C 1.50696 * 109.46761 * 90.00552 * 14 13 11 16 16 H 1.08005 * 120.00500 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99632 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00247 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46948 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47422 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46962 * 240.00399 * 19 17 15 23 23 C 1.46503 * 119.99995 * 355.32325 * 13 11 10 24 24 C 1.52999 * 109.47141 * 93.59576 * 23 13 11 25 25 C 1.52999 * 117.50062 * 243.56736 * 24 23 13 26 26 C 1.53007 * 117.49875 * 174.91075 * 24 23 13 27 27 H 1.09006 * 109.47257 * 274.37575 * 1 2 3 28 28 H 1.09000 * 109.47112 * 34.36787 * 1 2 3 29 29 H 1.08999 * 109.47727 * 154.36962 * 1 2 3 30 30 H 1.07997 * 125.56585 * 0.02582 * 3 2 1 31 31 H 0.96998 * 119.99560 * 359.97438 * 6 5 4 32 32 H 0.97004 * 120.00221 * 180.02562 * 6 5 4 33 33 H 1.08005 * 126.45205 * 180.30179 * 9 4 3 34 34 H 1.09001 * 109.46616 * 210.00031 * 14 13 11 35 35 H 1.08998 * 109.47323 * 330.00248 * 14 13 11 36 36 H 0.97006 * 119.99951 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.47108 * 213.59590 * 23 13 11 38 38 H 1.08999 * 109.46804 * 333.59663 * 23 13 11 39 39 H 1.08996 * 115.55338 * 29.23777 * 24 23 13 40 40 H 1.09005 * 117.50033 * 0.02562 * 25 24 23 41 41 H 1.09000 * 117.50029 * 145.02006 * 25 24 23 42 42 H 1.09004 * 117.49522 * 214.97951 * 26 24 23 43 43 H 1.08995 * 117.49554 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 -0.0006 5 16 4.9569 1.7728 -0.0002 6 7 5.3487 2.0669 1.5817 7 8 6.0309 1.0191 -0.5461 8 8 4.5224 3.0120 -0.5431 9 6 3.5779 -0.6889 0.0049 10 6 2.2678 -1.1181 -0.0005 11 6 1.8123 -2.5124 -0.0017 12 8 1.1269 -2.9280 -0.9174 13 7 2.1575 -3.3349 1.0087 14 6 1.6194 -4.6965 1.0612 15 6 2.5423 -5.6301 0.3211 16 1 3.4396 -5.2474 -0.1425 17 6 2.2411 -6.9729 0.2356 18 7 1.1487 -7.4390 0.8004 19 14 3.3846 -8.1301 -0.6824 20 1 4.5353 -7.3628 -1.2233 21 1 3.8800 -9.1770 0.2469 22 1 2.6472 -8.7700 -1.8014 23 6 3.0707 -2.8673 2.0545 24 6 2.2608 -2.3121 3.2279 25 6 2.4176 -0.8255 3.5540 26 6 3.0317 -1.8808 4.4772 27 1 -0.3634 0.0784 1.0247 28 1 -0.3633 0.8483 -0.5801 29 1 -0.3634 -0.9265 -0.4445 30 1 1.9082 2.1236 0.0004 31 1 4.8236 1.6687 2.2934 32 1 6.1028 2.6380 1.7965 33 1 4.4583 -1.3145 0.0106 34 1 1.5375 -5.0149 2.1004 35 1 0.6337 -4.7159 0.5964 36 1 0.9370 -8.3838 0.7407 37 1 3.6854 -3.6990 2.3986 38 1 3.7123 -2.0832 1.6526 39 1 1.2768 -2.7579 3.3727 40 1 3.0975 -0.2429 2.9323 41 1 1.5369 -0.2935 3.9136 42 1 2.5546 -2.0427 5.4438 43 1 4.1158 -1.9930 4.4632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346313268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:43 Heat of formation + Delta-G solvation = -29.387760 kcal Electronic energy + Delta-G solvation = -28647.890349 eV Core-core repulsion = 24629.314512 eV Total energy + Delta-G solvation = -4018.575837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58125 -38.82526 -37.24927 -37.04129 -35.76502 -34.59691 -33.32591 -33.19290 -32.59335 -29.89518 -27.74519 -26.95112 -26.27987 -23.59044 -22.36400 -21.98978 -21.32327 -20.47221 -19.49756 -19.03637 -17.68157 -17.43311 -16.81033 -16.51873 -16.24037 -15.74199 -15.41042 -15.24322 -15.05848 -14.91046 -14.54944 -14.28947 -14.05996 -13.23592 -12.93555 -12.88164 -12.74121 -12.57958 -12.24754 -12.16158 -12.11321 -12.04483 -11.92624 -11.54599 -11.46297 -11.30513 -11.21359 -10.91058 -10.69639 -10.58310 -10.42200 -10.16592 -9.91143 -9.67749 -9.35900 -9.31083 -8.50536 -8.38183 -7.82821 -6.10496 -4.14994 0.48968 1.61646 2.06741 2.44659 3.28002 3.28260 3.34497 3.36865 3.42139 3.70720 3.71427 3.92615 4.41182 4.46665 4.61289 4.71385 4.80222 4.90595 4.97753 4.98306 5.18114 5.24658 5.28255 5.34414 5.47859 5.60962 5.61253 5.77708 5.80820 5.87705 5.90967 6.03631 6.11639 6.38303 6.47088 6.68722 6.86062 6.89237 6.97417 7.27083 7.38753 7.85556 8.13812 8.19365 8.72483 8.91993 9.50569 10.97740 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003616 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.546802 B = 7741.536385 C = 7991.999527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.400 5.400 3 C 0.122 3.878 4 C -0.746 4.746 5 S 2.729 3.271 6 N -1.253 6.253 7 O -0.967 6.967 8 O -0.977 6.977 9 C -0.078 4.078 10 C -0.010 4.010 11 C 0.574 3.426 12 O -0.529 6.529 13 N -0.576 5.576 14 C 0.248 3.752 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.130 3.870 24 C -0.162 4.162 25 C -0.182 4.182 26 C -0.175 4.175 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.185 0.815 31 H 0.416 0.584 32 H 0.416 0.584 33 H 0.159 0.841 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 20.153 7.958 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.071 5.071 3 C -0.021 4.021 4 C -0.841 4.841 5 S 2.818 3.182 6 N -0.927 5.927 7 O -0.956 6.956 8 O -0.967 6.967 9 C -0.102 4.102 10 C -0.123 4.123 11 C 0.358 3.642 12 O -0.406 6.406 13 N -0.306 5.306 14 C 0.129 3.871 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.006 3.994 24 C -0.181 4.181 25 C -0.219 4.219 26 C -0.212 4.212 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.202 0.798 31 H 0.242 0.758 32 H 0.246 0.754 33 H 0.177 0.823 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.917 19.926 6.549 21.062 hybrid contribution 0.018 -1.072 0.302 1.113 sum 1.935 18.854 6.851 20.154 Atomic orbital electron populations 1.22372 0.75724 1.06140 1.04105 1.44214 1.07118 1.05210 1.50531 1.21673 0.88522 0.92091 0.99784 1.30341 1.13871 1.08929 1.30996 1.00508 0.72914 0.72951 0.71839 1.53141 1.45663 1.66892 1.26971 1.93595 1.53165 1.72455 1.76401 1.93565 1.82755 1.43581 1.76754 1.20822 0.95498 0.91761 1.02166 1.20814 0.90461 0.88282 1.12741 1.16969 0.81192 0.82950 0.83105 1.90839 1.39113 1.76458 1.34167 1.48106 1.45424 1.15157 1.21875 1.19373 0.95430 0.74464 0.97808 1.21449 1.08196 0.92459 1.34473 0.92161 1.24918 0.95429 0.98123 0.95493 1.69935 1.24580 1.14573 1.44323 0.86432 0.80810 0.80578 0.79581 1.19635 1.20926 1.20876 1.21292 0.91453 1.00010 0.86619 1.22838 1.01626 0.96740 0.96935 1.22993 1.02942 0.92131 1.03840 1.22911 0.99976 1.03767 0.94576 0.89849 0.89023 0.88050 0.79838 0.75759 0.75409 0.82343 0.94452 0.93961 0.92728 0.89260 0.90191 0.87636 0.88969 0.89571 0.89016 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.98 59.85 0.66 1.22 16 2 N -0.40 -4.95 3.16 -120.24 -0.38 -5.33 16 3 C 0.12 1.27 11.13 -16.91 -0.19 1.08 16 4 C -0.75 -8.71 6.14 -39.98 -0.25 -8.95 16 5 S 2.73 29.23 6.42 -107.50 -0.69 28.54 16 6 N -1.25 -7.89 9.55 60.35 0.58 -7.32 16 7 O -0.97 -14.23 17.88 -57.17 -1.02 -15.25 16 8 O -0.98 -12.76 17.85 -57.17 -1.02 -13.78 16 9 C -0.08 -1.12 8.60 -39.12 -0.34 -1.46 16 10 C -0.01 -0.15 5.86 -81.98 -0.48 -0.63 16 11 C 0.57 11.67 6.98 -12.85 -0.09 11.58 16 12 O -0.53 -12.99 16.12 5.19 0.08 -12.91 16 13 N -0.58 -11.60 2.46 -176.61 -0.43 -12.03 16 14 C 0.25 6.16 5.14 -5.20 -0.03 6.14 16 15 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 16 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 19 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 C 0.13 2.04 5.51 -4.04 -0.02 2.02 16 24 C -0.16 -2.12 6.01 -90.62 -0.54 -2.66 16 25 C -0.18 -1.82 10.18 -26.70 -0.27 -2.09 16 26 C -0.17 -1.78 10.25 -26.69 -0.27 -2.06 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 1.26 7.18 -51.93 -0.37 0.89 16 30 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.42 1.78 8.92 -34.46 -0.31 1.47 16 32 H 0.42 1.90 8.96 -34.47 -0.31 1.59 16 33 H 0.16 2.24 7.55 -52.48 -0.40 1.85 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.04 1.18 7.49 -51.93 -0.39 0.79 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 38 H 0.08 1.10 4.42 -51.93 -0.23 0.87 16 39 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -38.05 380.96 -9.44 -47.49 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.76 Total: 2.41 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.24 Total: -9.04 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.50 Total: -49.86 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.96 Total: -41.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 29.23 SS G_CDS: -0.69 Total: 28.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.05 -9.44 -47.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346313268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.105 kcal (2) G-P(sol) polarization free energy of solvation -38.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds