Wall clock time and date at job start Tue Mar 31 2020 23:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47204 * 2 1 4 4 C 1.46497 * 120.00042 * 84.99910 * 3 2 1 5 5 C 1.50707 * 109.47012 * 274.99828 * 4 3 2 6 6 C 1.38238 * 119.99792 * 90.00154 * 5 4 3 7 7 C 1.38235 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00220 * 359.97124 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.38234 * 120.00179 * 269.98090 * 5 4 3 11 11 S 1.65596 * 119.99901 * 264.99479 * 3 2 1 12 12 O 1.42102 * 106.40340 * 23.54249 * 11 3 2 13 13 O 1.42100 * 106.40292 * 156.45886 * 11 3 2 14 14 N 1.65599 * 107.21972 * 270.00056 * 11 3 2 15 15 C 1.46495 * 120.00211 * 64.99972 * 14 11 3 16 16 C 1.50694 * 109.47313 * 164.99986 * 15 14 11 17 17 O 1.21295 * 119.99984 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00380 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00385 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00279 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00059 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00095 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99957 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47119 * 90.00316 * 23 21 19 25 25 H 1.48503 * 109.46936 * 209.99778 * 23 21 19 26 26 H 1.48501 * 109.47333 * 330.00046 * 23 21 19 27 27 H 1.08997 * 109.47711 * 300.00027 * 1 2 3 28 28 H 1.09000 * 109.46664 * 60.00559 * 1 2 3 29 29 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47591 * 239.99434 * 2 1 3 31 31 H 1.09010 * 109.46819 * 119.99966 * 2 1 3 32 32 H 1.09005 * 109.47643 * 155.00289 * 4 3 2 33 33 H 1.09000 * 109.47513 * 34.99453 * 4 3 2 34 34 H 1.08005 * 120.00068 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.99770 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 38 38 H 1.07999 * 119.99968 * 359.97438 * 10 5 4 39 39 H 0.97003 * 119.99819 * 244.99808 * 14 11 3 40 40 H 1.08998 * 109.47196 * 284.99933 * 15 14 11 41 41 H 1.09000 * 109.46978 * 44.99947 * 15 14 11 42 42 H 0.96999 * 119.99493 * 359.97438 * 18 16 15 43 43 H 0.97000 * 119.99993 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 0.8359 2.7289 1.6355 6 6 -0.0658 2.0222 2.4091 7 6 -1.2785 2.5913 2.7504 8 6 -1.5891 3.8672 2.3187 9 6 -0.6897 4.5718 1.5406 10 6 0.5249 4.0045 1.2032 11 16 2.4123 2.1201 -1.4286 12 8 1.6870 1.4414 -2.4448 13 8 2.3058 3.5185 -1.1999 14 7 4.0145 1.8135 -1.7136 15 6 4.4658 0.4412 -1.9566 16 6 5.8543 0.4652 -2.5418 17 8 6.4119 1.5246 -2.7372 18 7 6.4762 -0.6903 -2.8492 19 6 7.7396 -0.6685 -3.3811 20 1 8.2364 0.2747 -3.5542 21 6 8.3809 -1.8599 -3.6974 22 7 9.5917 -1.8389 -4.2077 23 14 7.5219 -3.4912 -3.3973 24 1 6.7502 -3.8742 -4.6068 25 1 8.5345 -4.5373 -3.1045 26 1 6.5983 -3.3592 -2.2420 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.9080 2.8919 1.1513 33 1 2.4688 1.4183 2.0481 34 1 0.1771 1.0255 2.7469 35 1 -1.9831 2.0391 3.3545 36 1 -2.5364 4.3120 2.5858 37 1 -0.9342 5.5669 1.1996 38 1 1.2298 4.5569 0.5994 39 1 4.6542 2.5427 -1.7196 40 1 4.4775 -0.1094 -1.0160 41 1 3.7857 -0.0466 -2.6548 42 1 6.0301 -1.5374 -2.6933 43 1 10.0396 -2.6707 -4.4282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352513478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:35 Heat of formation + Delta-G solvation = -79.450568 kcal Electronic energy + Delta-G solvation = -27869.156236 eV Core-core repulsion = 23848.409514 eV Total energy + Delta-G solvation = -4020.746723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.65702 -38.66349 -37.29085 -36.83341 -35.80571 -34.75361 -33.80451 -32.32528 -31.80832 -31.15605 -30.10286 -27.39740 -25.97473 -24.19059 -23.03525 -22.75983 -21.59811 -19.76469 -19.44525 -18.69747 -17.93586 -17.47046 -17.15108 -16.36842 -15.67167 -15.63782 -15.43669 -15.19378 -14.89873 -14.66137 -14.36440 -14.08348 -13.96316 -13.55025 -13.26379 -13.07175 -13.00393 -12.80147 -12.66235 -12.49393 -12.40703 -12.19953 -12.06974 -12.01632 -11.80940 -11.51740 -11.37266 -11.27763 -11.11879 -11.07304 -10.68180 -10.08156 -9.72803 -9.55335 -9.45044 -9.06510 -8.95109 -8.76251 -8.32335 -6.42025 -3.94779 0.50335 1.13487 1.22047 2.81924 2.94574 3.00596 3.09322 3.46940 3.53673 3.67912 4.00845 4.22602 4.42965 4.50765 4.54828 4.68477 4.80864 4.89791 5.02217 5.05846 5.10520 5.17806 5.20682 5.27994 5.34337 5.42939 5.49472 5.51829 5.59817 5.64643 5.77314 5.87582 5.91700 6.01986 6.09718 6.24034 6.31182 6.35897 6.45346 6.81473 7.17367 7.43506 7.99971 8.43945 8.80913 9.27954 9.62484 10.70305 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.002707 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.714507 B =10340.472790 C =10900.611882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 N -1.002 6.002 4 C 0.165 3.835 5 C -0.110 4.110 6 C -0.101 4.101 7 C -0.130 4.130 8 C -0.118 4.118 9 C -0.125 4.125 10 C -0.100 4.100 11 S 2.788 3.212 12 O -0.975 6.975 13 O -0.974 6.974 14 N -1.108 6.108 15 C 0.105 3.895 16 C 0.443 3.557 17 O -0.571 6.571 18 N -0.579 5.579 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.044 3.956 22 N -0.875 5.875 23 Si 0.880 3.120 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.268 1.268 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.140 0.860 39 H 0.426 0.574 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.373 0.627 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.578 3.245 15.629 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.006 4.006 3 N -0.840 5.840 4 C 0.040 3.960 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.143 4.143 10 C -0.119 4.119 11 S 2.795 3.205 12 O -0.958 6.958 13 O -0.958 6.958 14 N -0.874 5.874 15 C -0.025 4.025 16 C 0.228 3.772 17 O -0.454 6.454 18 N -0.218 5.218 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.160 4.160 22 N -0.514 5.514 23 Si 0.706 3.294 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.193 1.193 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.158 0.842 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.206 0.794 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.670 4.160 14.829 26.586 hybrid contribution -0.056 -1.392 0.395 1.448 sum -21.726 2.768 15.224 26.673 Atomic orbital electron populations 1.22418 0.95826 1.02374 1.03468 1.21292 0.94986 0.81044 1.03276 1.58078 1.79763 1.23745 1.22428 1.20165 0.93933 0.95851 0.86045 1.20260 0.97262 0.94890 0.98774 1.20992 0.93842 0.99265 0.97895 1.21104 0.97054 0.95756 1.00857 1.21183 0.99363 0.94995 0.98066 1.21212 0.94266 1.00203 0.98602 1.21489 0.97275 0.95048 0.98066 1.01864 0.72682 0.72975 0.72969 1.93608 1.70869 1.75984 1.55329 1.93581 1.86000 1.30532 1.85705 1.55569 1.28841 1.15221 1.87726 1.20931 0.97456 0.83077 1.01075 1.19517 0.87371 0.84955 0.85354 1.90554 1.66844 1.30017 1.57963 1.42148 1.16523 1.06169 1.56939 1.19444 0.89545 0.96966 1.37875 0.86097 1.25075 0.95789 0.98198 0.96950 1.69621 1.12103 1.28309 1.41333 0.86664 0.79853 0.83873 0.78984 1.19382 1.20031 1.19333 0.91248 0.92012 0.91709 0.90026 0.90229 0.88983 0.89267 0.86000 0.86239 0.86321 0.86045 0.84245 0.73569 0.90202 0.88946 0.79380 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 10.01 37.16 0.37 -1.22 16 2 C 0.12 1.03 6.09 -4.04 -0.02 1.00 16 3 N -1.00 -10.25 2.85 -115.66 -0.33 -10.58 16 4 C 0.17 1.46 5.50 -5.19 -0.03 1.43 16 5 C -0.11 -1.06 5.07 -104.62 -0.53 -1.59 16 6 C -0.10 -0.83 7.10 -39.58 -0.28 -1.11 16 7 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 8 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 9 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 10 C -0.10 -1.09 9.28 -39.58 -0.37 -1.45 16 11 S 2.79 38.54 6.05 -107.50 -0.65 37.89 16 12 O -0.97 -16.04 16.58 -57.17 -0.95 -16.98 16 13 O -0.97 -14.94 15.24 -57.17 -0.87 -15.81 16 14 N -1.11 -16.52 5.99 -11.66 -0.07 -16.59 16 15 C 0.11 1.62 6.73 -5.20 -0.03 1.59 16 16 C 0.44 9.52 7.85 -10.99 -0.09 9.43 16 17 O -0.57 -14.52 15.30 5.54 0.08 -14.43 16 18 N -0.58 -13.08 5.09 -10.96 -0.06 -13.13 16 19 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 20 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 22 N -0.87 -24.75 13.96 55.50 0.77 -23.98 16 23 Si 0.88 18.44 27.74 -169.99 -4.71 13.73 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -4.98 6.52 56.52 0.37 -4.62 16 27 H 0.07 0.57 4.40 -51.93 -0.23 0.34 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.71 7.61 -51.93 -0.40 0.32 16 31 H 0.08 0.49 8.00 -51.92 -0.42 0.07 16 32 H 0.09 0.81 7.55 -51.93 -0.39 0.42 16 33 H 0.09 0.57 7.95 -51.93 -0.41 0.16 16 34 H 0.12 0.77 7.66 -52.48 -0.40 0.37 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.14 1.65 6.61 -52.49 -0.35 1.30 16 39 H 0.43 6.78 7.70 -34.47 -0.27 6.51 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.29 7.75 -51.93 -0.40 0.89 16 42 H 0.37 7.23 5.76 -40.82 -0.24 6.99 16 43 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -34.58 368.24 -9.24 -43.82 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.59 Total: 14.37 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.42 Total: -3.85 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: 0.32 Total: -64.28 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.73 Total: -47.23 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.71 Total: 13.73 kcal Atomic # 16 Polarization: 38.54 SS G_CDS: -0.65 Total: 37.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.58 -9.24 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352513478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.628 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds