Wall clock time and date at job start Tue Mar 31 2020 23:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47660 * 2 1 4 4 C 1.34223 * 117.00173 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00246 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99842 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47409 * 60.00205 * 6 4 3 8 8 C 1.53000 * 109.47290 * 299.99896 * 6 4 3 9 9 C 1.50706 * 109.47167 * 180.02562 * 6 4 3 10 10 C 1.33410 * 122.71303 * 44.72912 * 9 6 4 11 11 S 1.76168 * 108.06671 * 180.27043 * 10 9 6 12 12 C 1.70963 * 90.34578 * 0.02562 * 11 10 9 13 13 N 1.39003 * 124.95000 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99644 * 359.97438 * 13 12 11 15 15 O 1.21589 * 120.00327 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99974 * 179.97438 * 14 13 12 17 17 C 1.46509 * 119.99980 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46700 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00371 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99651 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99602 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00039 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47330 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46997 * 120.00301 * 22 20 18 25 25 H 1.48500 * 109.47314 * 240.00583 * 22 20 18 26 26 N 1.29623 * 110.10972 * 359.97438 * 12 11 10 27 27 H 1.09003 * 109.46881 * 59.99432 * 1 2 3 28 28 H 1.08993 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46947 * 299.99824 * 1 2 3 30 30 H 1.09004 * 109.46947 * 240.00176 * 2 1 3 31 31 H 1.09003 * 109.46881 * 120.00567 * 2 1 3 32 32 H 1.08995 * 109.47392 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46851 * 300.00050 * 7 6 4 34 34 H 1.09002 * 109.47169 * 59.99917 * 7 6 4 35 35 H 1.09004 * 109.46951 * 300.00483 * 8 6 4 36 36 H 1.09002 * 109.46880 * 60.00004 * 8 6 4 37 37 H 1.08995 * 109.47333 * 179.97438 * 8 6 4 38 38 H 1.08000 * 125.96658 * 0.25436 * 10 9 6 39 39 H 0.96993 * 120.00516 * 179.97438 * 13 12 11 40 40 H 0.96999 * 120.00653 * 0.02562 * 16 14 13 41 41 H 1.08994 * 109.47429 * 300.00451 * 17 16 14 42 42 H 1.08996 * 109.46576 * 60.00614 * 17 16 14 43 43 H 0.97008 * 119.99787 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0012 7 6 3.4490 3.6839 1.2504 8 6 3.4498 3.6846 -1.2480 9 6 5.4258 2.8583 0.0010 10 6 6.1040 2.0246 -0.7893 11 16 7.8224 2.2456 -0.4702 12 6 7.4623 3.4402 0.6986 13 7 8.4073 4.1351 1.4443 14 6 9.7201 3.8844 1.2702 15 8 10.0777 3.0501 0.4613 16 7 10.6365 4.5586 1.9928 17 6 12.0635 4.2856 1.8040 18 6 12.8692 5.1659 2.7242 19 1 12.3686 5.8590 3.3840 20 6 14.2458 5.0857 2.7246 21 7 14.8554 4.2414 1.9215 22 14 15.2447 6.1774 3.8646 23 1 14.3277 7.0327 4.6602 24 1 16.0504 5.3305 4.7806 25 1 16.1500 7.0364 3.0599 26 7 6.1795 3.6044 0.7874 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8652 4.6912 1.2506 33 1 2.3604 3.7410 1.2501 34 1 3.7846 3.1515 2.1404 35 1 3.7860 3.1526 -2.1381 36 1 2.3613 3.7417 -1.2484 37 1 3.8661 4.6919 -1.2474 38 1 5.6746 1.3344 -1.5004 39 1 8.1221 4.8004 2.0899 40 1 10.3513 5.2239 2.6385 41 1 12.2665 3.2392 2.0316 42 1 12.3392 4.4928 0.7701 43 1 15.8238 4.1852 1.9214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353403538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:20 Heat of formation + Delta-G solvation = -71.970214 kcal Electronic energy + Delta-G solvation = -26690.717459 eV Core-core repulsion = 22670.295109 eV Total energy + Delta-G solvation = -4020.422350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22285 -40.15423 -39.27510 -36.92431 -35.65616 -34.53568 -34.08514 -32.45221 -31.93097 -29.34240 -27.69301 -27.19887 -24.87470 -24.70434 -23.26090 -22.62762 -21.26091 -21.11098 -19.70753 -18.36404 -17.60577 -17.49874 -16.81816 -16.50592 -16.37249 -15.95787 -15.57386 -15.08405 -14.77410 -14.61476 -14.36647 -14.19485 -13.87495 -13.38670 -13.16795 -13.13522 -13.00539 -12.55610 -12.40273 -12.23399 -12.20116 -12.12530 -12.11477 -11.90595 -11.49758 -11.16474 -11.00286 -10.94091 -10.84016 -10.59348 -10.42340 -10.35952 -9.69350 -9.53156 -9.48258 -8.96394 -8.87920 -8.30545 -7.82358 -6.25149 -4.32734 1.03389 1.40866 1.98575 2.10469 2.20918 2.69330 2.89595 3.19358 3.27053 3.29772 3.56149 4.17532 4.25429 4.33398 4.54644 4.60913 4.65419 4.74408 4.77809 4.89272 5.11714 5.20277 5.26406 5.37666 5.39452 5.44951 5.55063 5.56912 5.62598 5.77406 5.85563 5.96318 6.05022 6.18958 6.41839 6.65345 7.13042 7.29972 7.38461 7.52054 7.59707 7.84039 7.92773 8.44969 8.64391 8.87517 9.33759 10.84856 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033133 B = 0.001965 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.865820 B =14243.208950 C =14519.426177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.471 3.529 5 O -0.493 6.493 6 C 0.028 3.972 7 C -0.127 4.127 8 C -0.136 4.136 9 C 0.087 3.913 10 C -0.294 4.294 11 S 0.263 5.737 12 C 0.273 3.727 13 N -0.642 5.642 14 C 0.689 3.311 15 O -0.565 6.565 16 N -0.708 5.708 17 C 0.264 3.736 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.281 1.281 26 N -0.518 5.518 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.169 0.831 39 H 0.416 0.584 40 H 0.394 0.606 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.966 -3.164 -4.521 28.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.270 6.270 4 C 0.312 3.688 5 O -0.379 6.379 6 C 0.024 3.976 7 C -0.184 4.184 8 C -0.194 4.194 9 C -0.045 4.045 10 C -0.435 4.435 11 S 0.513 5.487 12 C -0.096 4.096 13 N -0.295 5.295 14 C 0.387 3.613 15 O -0.443 6.443 16 N -0.359 5.359 17 C 0.143 3.857 18 C -0.585 4.585 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.520 5.520 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 N -0.242 5.242 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.186 0.814 39 H 0.253 0.747 40 H 0.227 0.773 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.287 -4.311 -5.248 27.150 hybrid contribution -0.506 1.038 1.362 1.786 sum -26.793 -3.274 -3.886 27.271 Atomic orbital electron populations 1.21803 0.92527 1.02997 1.03559 1.23049 0.95375 0.80234 1.02715 1.86478 1.24164 1.32301 1.84092 1.23441 0.80626 0.92315 0.72370 1.90698 1.60168 1.42799 1.44231 1.18754 0.89001 0.89483 1.00327 1.21694 1.00822 1.01375 0.94524 1.21883 1.02038 1.00877 0.94566 1.18633 0.93950 0.96334 0.95620 1.27259 0.99955 1.07441 1.08879 1.85252 0.99911 1.31861 1.31679 1.22997 0.89603 0.98476 0.98538 1.42033 1.03680 1.41895 1.41847 1.16106 0.79311 0.82918 0.82934 1.90828 1.77667 1.36887 1.38888 1.45759 1.08214 1.40981 1.40921 1.19194 0.71161 0.97448 0.97852 1.21210 0.91557 1.22703 1.23001 0.91675 1.24940 0.97600 0.95592 0.95785 1.69979 1.09719 1.35327 1.36967 0.86319 0.79959 0.80099 0.80280 1.19618 1.20742 1.20729 1.65913 1.01253 1.29424 1.27565 0.91433 0.90237 0.91419 0.91184 0.91202 0.89961 0.91539 0.92019 0.91869 0.90665 0.90482 0.81351 0.74705 0.77320 0.95065 0.95050 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.43 10.02 -39.24 -0.39 -3.82 16 4 C 0.47 5.55 6.42 36.01 0.23 5.79 16 5 O -0.49 -7.16 13.92 -18.75 -0.26 -7.42 16 6 C 0.03 0.31 0.85 -156.81 -0.13 0.18 16 7 C -0.13 -1.24 7.85 37.16 0.29 -0.95 16 8 C -0.14 -1.16 8.36 37.16 0.31 -0.85 16 9 C 0.09 1.22 5.21 -84.19 -0.44 0.78 16 10 C -0.29 -4.21 9.43 29.04 0.27 -3.94 16 11 S 0.26 4.26 20.21 -107.50 -2.17 2.09 16 12 C 0.27 4.44 8.19 -87.35 -0.72 3.73 16 13 N -0.64 -10.07 5.41 -17.48 -0.09 -10.17 16 14 C 0.69 13.34 8.53 -86.92 -0.74 12.59 16 15 O -0.56 -12.71 13.81 5.29 0.07 -12.64 16 16 N -0.71 -14.01 5.55 -66.41 -0.37 -14.38 16 17 C 0.26 6.63 5.43 -5.19 -0.03 6.60 16 18 C -0.55 -14.20 9.28 -34.44 -0.32 -14.52 16 19 H 0.07 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.20 13.29 55.43 0.74 -24.46 16 22 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 N -0.52 -7.83 9.60 -11.28 -0.11 -7.94 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 33 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.17 2.21 7.29 -52.49 -0.38 1.83 16 39 H 0.42 5.20 8.83 -40.82 -0.36 4.84 16 40 H 0.39 6.53 8.33 -40.82 -0.34 6.19 16 41 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -32.10 380.12 -8.74 -40.84 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.10 Total: 5.49 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -0.75 Total: 11.40 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.16 Total: -56.94 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.58 Total: -23.88 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -2.17 Total: 2.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.10 -8.74 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353403538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.132 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds