Wall clock time and date at job start Tue Mar 31 2020 23:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 120.00244 * 2 1 4 4 N 1.46497 * 109.46904 * 125.00356 * 3 2 1 5 5 C 1.46501 * 119.99936 * 269.99949 * 4 3 2 6 6 C 1.50700 * 109.47204 * 270.00211 * 5 4 3 7 7 H 1.07997 * 119.99985 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00132 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99944 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46862 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47085 * 119.99891 * 10 8 6 13 13 H 1.48501 * 109.47231 * 240.00220 * 10 8 6 14 14 C 1.34780 * 120.00064 * 90.00278 * 4 3 2 15 15 O 1.21280 * 119.99727 * 179.97438 * 14 4 3 16 16 C 1.50692 * 120.00110 * 359.97438 * 14 4 3 17 17 C 1.50697 * 109.47306 * 179.97438 * 16 14 4 18 18 C 1.34851 * 125.88912 * 84.97882 * 17 16 14 19 19 C 1.40888 * 107.41956 * 180.02562 * 18 17 16 20 20 S 1.76198 * 126.29414 * 179.97438 * 19 18 17 21 21 N 1.65603 * 107.21630 * 90.00364 * 20 19 18 22 22 O 1.42106 * 106.40505 * 203.54095 * 20 19 18 23 23 O 1.42095 * 106.40628 * 336.46561 * 20 19 18 24 24 C 1.34852 * 107.41508 * 359.73457 * 19 18 17 25 25 N 1.36341 * 108.21917 * 0.42337 * 24 19 18 26 26 C 1.46499 * 125.63747 * 179.82823 * 25 24 19 27 27 H 1.07994 * 119.99961 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99731 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.00035 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.46705 * 5.00590 * 3 2 1 31 31 H 1.09003 * 109.46868 * 245.00338 * 3 2 1 32 32 H 1.09001 * 109.47115 * 30.00162 * 5 4 3 33 33 H 1.09004 * 109.47250 * 150.00321 * 5 4 3 34 34 H 0.96998 * 119.99830 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46975 * 60.00170 * 16 14 4 36 36 H 1.09001 * 109.47378 * 300.00106 * 16 14 4 37 37 H 1.08005 * 126.29307 * 0.02562 * 18 17 16 38 38 H 0.96995 * 120.00281 * 359.97438 * 21 20 19 39 39 H 0.97003 * 119.99972 * 179.97438 * 21 20 19 40 40 H 1.08007 * 125.89328 * 180.24930 * 24 19 18 41 41 H 1.09002 * 109.47391 * 269.69490 * 26 25 24 42 42 H 1.09001 * 109.46813 * 149.69546 * 26 25 24 43 43 H 1.09004 * 109.47041 * 29.69674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8445 3.3435 2.4805 7 1 3.3034 3.8369 1.6366 8 6 2.5187 4.0665 3.6083 9 7 1.9593 3.4658 4.6358 10 14 2.8718 5.8996 3.6770 11 1 3.4997 6.3307 2.4021 12 1 1.6012 6.6413 3.8781 13 1 3.7949 6.1840 4.8050 14 6 4.2498 0.8660 0.9823 15 8 5.0200 0.8886 1.9188 16 6 4.6970 0.3173 -0.3481 17 6 6.1316 -0.1333 -0.2491 18 6 6.5539 -1.3354 0.1924 19 6 7.9610 -1.3402 0.1216 20 16 9.0238 -2.6689 0.5794 21 7 9.2435 -3.6072 -0.7673 22 8 10.2871 -2.0889 0.8747 23 8 8.2971 -3.4627 1.5072 24 6 8.3447 -0.1429 -0.3660 25 7 7.2264 0.6043 -0.5899 26 6 7.2046 1.9716 -1.1155 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6213 1.4026 -0.9314 32 1 1.4889 1.6965 2.5459 33 1 3.0991 1.3601 3.2259 34 1 1.7298 3.9745 5.4291 35 1 4.6120 1.0938 -1.1084 36 1 4.0678 -0.5297 -0.6218 37 1 5.9285 -2.1458 0.5369 38 1 8.8116 -3.3666 -1.6018 39 1 9.8041 -4.3975 -0.7217 40 1 9.3624 0.1712 -0.5453 41 1 7.2485 2.6798 -0.2881 42 1 6.2856 2.1291 -1.6801 43 1 8.0633 2.1232 -1.7696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359394814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:35 Heat of formation + Delta-G solvation = -36.763470 kcal Electronic energy + Delta-G solvation = -27653.007897 eV Core-core repulsion = 23634.112226 eV Total energy + Delta-G solvation = -4018.895671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51058 -39.00338 -36.93614 -35.72212 -35.65575 -33.30817 -33.26088 -33.11310 -32.21964 -31.79987 -28.08916 -26.84752 -26.47215 -25.38358 -22.82185 -21.73370 -20.19487 -19.74324 -19.24648 -18.57790 -17.73393 -17.32819 -16.62313 -16.60909 -16.44741 -15.60487 -15.34121 -15.20743 -15.13523 -14.81781 -14.51329 -14.27369 -13.79871 -13.25243 -12.85727 -12.78311 -12.69031 -12.48900 -12.40661 -12.27825 -12.06577 -11.94344 -11.82326 -11.76329 -11.67232 -11.30697 -11.08726 -10.99367 -10.92727 -10.65049 -10.53382 -10.24157 -9.68221 -9.25273 -9.22347 -9.02766 -8.47994 -8.20768 -7.75287 -6.08397 -4.13630 0.59764 1.78777 2.37132 2.45891 2.73700 3.25149 3.29830 3.33954 3.36514 3.41830 3.81859 3.97847 4.39977 4.47743 4.62410 4.69676 4.90951 4.92765 5.01201 5.13153 5.23750 5.27114 5.31823 5.34310 5.44613 5.54222 5.58696 5.85414 5.91369 5.94790 5.99882 6.11584 6.71249 6.73635 6.84838 6.90297 6.92904 7.01631 7.13375 7.41943 7.48591 7.87391 8.18490 8.33048 8.84681 9.01793 9.51375 10.99751 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.003075 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.363325 B = 9103.822575 C = 9984.692299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.503 3.497 15 O -0.525 6.525 16 C -0.077 4.077 17 C 0.041 3.959 18 C -0.100 4.100 19 C -0.740 4.740 20 S 2.729 3.271 21 N -1.255 6.255 22 O -0.978 6.978 23 O -0.968 6.968 24 C 0.116 3.884 25 N -0.425 5.425 26 C 0.062 3.938 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.415 0.585 39 H 0.415 0.585 40 H 0.181 0.819 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -9.682 -19.613 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.012 3.988 4 N -0.325 5.325 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.288 3.712 15 O -0.401 6.401 16 C -0.118 4.118 17 C -0.069 4.069 18 C -0.124 4.124 19 C -0.837 4.837 20 S 2.818 3.182 21 N -0.927 5.927 22 O -0.967 6.967 23 O -0.957 6.957 24 C -0.024 4.024 25 N -0.097 5.097 26 C -0.080 4.080 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.167 0.833 38 H 0.241 0.759 39 H 0.244 0.756 40 H 0.198 0.802 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.434 -9.267 -18.011 21.941 hybrid contribution -0.381 1.328 -0.647 1.525 sum 8.053 -7.939 -18.658 21.817 Atomic orbital electron populations 1.23828 0.95862 1.01812 1.00308 1.23430 0.96449 0.98999 1.00138 1.20592 0.93167 0.95498 0.89551 1.48235 1.10285 1.60323 1.13682 1.19286 0.95436 0.93719 0.78692 1.21426 1.40674 0.93296 1.01210 0.92581 1.24940 0.95074 0.98735 0.95358 1.69940 1.41869 1.36073 1.05165 0.86459 0.77941 0.85003 0.78059 1.19941 1.20929 1.20851 1.20132 0.82600 0.79145 0.89286 1.90732 1.52404 1.55378 1.41545 1.20328 0.90676 1.02652 0.98130 1.19848 0.88079 0.92138 1.06821 1.20169 0.91578 0.97910 1.02701 1.30381 1.09305 1.16085 1.27903 1.00478 0.72961 0.72778 0.71946 1.53193 1.66554 1.43513 1.29485 1.93564 1.41924 1.78483 1.82779 1.93581 1.73578 1.68753 1.59790 1.21614 0.91677 0.90039 0.99059 1.44247 1.06030 1.12490 1.46971 1.22223 1.04515 0.80530 1.00709 0.88713 0.88298 0.87671 0.89397 0.91009 0.94920 0.93837 0.92706 0.88844 0.87119 0.83257 0.75915 0.75581 0.80211 0.89667 0.89360 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.17 -2.24 9.74 -36.02 -0.35 -2.59 16 3 C 0.14 2.02 5.65 -5.19 -0.03 1.99 16 4 N -0.59 -11.93 2.44 -176.43 -0.43 -12.36 16 5 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 6 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.50 9.97 7.66 -10.99 -0.08 9.88 16 15 O -0.52 -13.18 15.61 5.56 0.09 -13.09 16 16 C -0.08 -1.04 4.53 -29.04 -0.13 -1.17 16 17 C 0.04 0.60 5.38 -81.79 -0.44 0.16 16 18 C -0.10 -1.47 10.58 -39.78 -0.42 -1.89 16 19 C -0.74 -9.70 6.17 -39.78 -0.25 -9.94 16 20 S 2.73 32.83 6.43 -107.50 -0.69 32.13 16 21 N -1.25 -8.65 9.55 60.35 0.58 -8.07 16 22 O -0.98 -14.38 17.86 -57.17 -1.02 -15.40 16 23 O -0.97 -15.62 17.89 -57.17 -1.02 -16.65 16 24 C 0.12 1.38 11.19 -16.75 -0.19 1.19 16 25 N -0.43 -5.31 3.15 -119.90 -0.38 -5.69 16 26 C 0.06 0.56 10.92 59.85 0.65 1.21 16 27 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 29 H 0.11 1.28 7.83 -52.48 -0.41 0.87 16 30 H 0.09 1.38 7.72 -51.93 -0.40 0.98 16 31 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.01 6.18 -51.93 -0.32 0.69 16 36 H 0.11 1.21 7.77 -51.93 -0.40 0.81 16 37 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.41 1.87 8.92 -34.47 -0.31 1.56 16 39 H 0.42 2.12 8.96 -34.47 -0.31 1.81 16 40 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.67 6.94 -51.93 -0.36 0.31 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -41.02 383.89 -8.37 -49.39 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.72 Total: 3.00 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.27 Total: -9.91 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.50 Total: -51.82 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.96 Total: -45.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 32.83 SS G_CDS: -0.69 Total: 32.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.02 -8.37 -49.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.626 kcal (2) G-P(sol) polarization free energy of solvation -41.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds