Wall clock time and date at job start Tue Mar 31 2020 23:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21294 * 120.00401 * 2 1 4 4 C 1.46861 * 119.99905 * 179.97438 * 2 1 3 5 5 C 1.40037 * 120.10893 * 179.97438 * 4 2 1 6 6 C 1.37606 * 119.90138 * 180.02562 * 5 4 2 7 7 C 1.39050 * 120.13211 * 359.97438 * 6 5 4 8 8 O 1.35683 * 119.88730 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00452 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47490 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.46967 * 305.00670 * 10 9 8 12 12 O 1.42901 * 109.47038 * 65.00234 * 10 9 8 13 13 C 1.53001 * 109.47101 * 184.99912 * 10 9 8 14 14 N 1.46898 * 109.46759 * 178.51012 * 13 10 9 15 15 C 1.46903 * 110.99525 * 164.01775 * 14 13 10 16 16 C 1.46902 * 111.00109 * 287.96551 * 14 13 10 17 17 C 1.50700 * 109.47028 * 170.00385 * 16 14 13 18 18 H 1.07996 * 120.00270 * 0.02562 * 17 16 14 19 19 C 1.37881 * 120.00005 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99700 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47148 * 90.00188 * 21 19 17 23 23 H 1.48501 * 109.47248 * 210.00197 * 21 19 17 24 24 H 1.48504 * 109.47220 * 330.00708 * 21 19 17 25 25 C 1.39162 * 120.22362 * 0.03100 * 7 6 5 26 26 Cl 1.73600 * 119.95438 * 179.97438 * 25 7 6 27 27 C 1.37705 * 120.09166 * 0.22495 * 25 7 6 28 28 H 1.09000 * 109.46819 * 270.00278 * 1 2 3 29 29 H 1.08998 * 109.47230 * 30.00225 * 1 2 3 30 30 H 1.09001 * 109.47115 * 150.00041 * 1 2 3 31 31 H 1.08001 * 120.04860 * 359.97438 * 5 4 2 32 32 H 1.08005 * 119.92939 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47032 * 300.00646 * 9 8 7 34 34 H 1.09003 * 109.46715 * 59.99563 * 9 8 7 35 35 H 0.96710 * 113.99865 * 59.99959 * 12 10 9 36 36 H 1.08995 * 109.47364 * 298.51100 * 13 10 9 37 37 H 1.09007 * 109.46653 * 58.51395 * 13 10 9 38 38 H 1.08995 * 109.47700 * 65.48634 * 15 14 13 39 39 H 1.09006 * 109.47063 * 185.48976 * 15 14 13 40 40 H 1.09005 * 109.47246 * 305.47916 * 15 14 13 41 41 H 1.09004 * 109.47414 * 290.00038 * 16 14 13 42 42 H 1.09002 * 109.47103 * 50.00222 * 16 14 13 43 43 H 0.96996 * 119.99638 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.06594 * 179.73235 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6416 -1.2746 0.0000 6 6 4.3253 -2.4687 0.0000 7 6 3.6285 -3.6720 0.0011 8 8 4.3076 -4.8466 0.0016 9 6 5.7346 -4.7711 0.0016 10 6 6.3203 -6.1845 0.0029 11 1 5.9147 -6.7450 0.8451 12 8 5.9767 -6.8436 -1.2176 13 6 7.8431 -6.1055 0.1285 14 7 8.4024 -7.4633 0.1656 15 6 9.8481 -7.4443 -0.0943 16 6 8.1064 -8.1198 1.4460 17 6 8.4742 -9.5787 1.3594 18 1 8.8870 -9.9781 0.4448 19 6 8.2847 -10.4033 2.4480 20 7 7.7825 -9.9167 3.5619 21 14 8.7400 -12.2117 2.3404 22 1 10.1521 -12.3926 2.7626 23 1 7.8518 -12.9997 3.2323 24 1 8.5781 -12.6805 0.9406 25 6 2.2369 -3.6756 0.0015 26 17 1.3739 -5.1819 0.0022 27 6 1.5434 -2.4859 -0.0038 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.1842 -0.3407 -0.0012 32 1 5.4054 -2.4713 -0.0008 33 1 6.0702 -4.2390 -0.8886 34 1 6.0702 -4.2383 0.8913 35 1 6.3058 -6.3990 -2.0109 36 1 8.2509 -5.5678 -0.7274 37 1 8.1050 -5.5794 1.0466 38 1 10.3564 -6.9230 0.7168 39 1 10.2193 -8.4673 -0.1578 40 1 10.0414 -6.9288 -1.0351 41 1 8.6843 -7.6460 2.2395 42 1 7.0428 -8.0257 1.6653 43 1 7.6488 -10.4969 4.3277 44 1 0.4634 -2.4892 -0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414126384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:39 Heat of formation + Delta-G solvation = -98.708137 kcal Electronic energy + Delta-G solvation = -26551.974663 eV Core-core repulsion = 22496.056412 eV Total energy + Delta-G solvation = -4055.918251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82122 -39.65013 -38.17429 -37.17189 -36.50397 -35.43562 -32.52391 -32.14608 -31.37789 -30.33330 -29.24201 -27.42440 -26.64892 -24.20428 -23.55721 -23.10875 -21.69625 -20.30350 -20.18840 -18.66426 -17.17874 -16.89500 -16.72692 -16.34632 -15.92869 -15.40800 -15.37390 -15.00336 -14.90390 -14.68717 -14.53432 -14.32507 -13.75886 -13.69209 -13.54485 -13.11547 -12.96990 -12.66590 -12.59731 -12.48991 -11.99033 -11.72394 -11.67663 -11.53130 -11.25227 -11.23874 -11.12709 -10.96483 -10.76695 -10.69454 -10.40130 -10.15404 -9.83655 -9.77224 -9.38971 -9.19653 -8.57725 -8.43878 -7.30944 -6.03425 -4.04051 0.24692 0.72752 1.91008 1.96847 2.71107 3.23322 3.32068 3.38572 3.43559 3.66177 4.17956 4.39447 4.41047 4.51460 4.59157 4.63397 4.66700 4.87725 4.90359 4.96079 5.01101 5.06760 5.21490 5.31865 5.32104 5.37493 5.37808 5.50113 5.56809 5.67416 5.86025 5.88964 6.00175 6.07227 6.25155 6.28534 6.65374 6.92091 7.13306 7.20812 7.24686 7.76051 7.97988 8.03502 8.14139 8.50085 9.02672 9.59916 11.07729 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002190 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.885855 B =12782.787087 C =13587.908411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.403 3.597 3 O -0.464 6.464 4 C -0.212 4.212 5 C -0.012 4.012 6 C -0.217 4.217 7 C 0.182 3.818 8 O -0.279 6.279 9 C 0.023 3.977 10 C 0.117 3.883 11 H 0.116 0.884 12 O -0.530 6.530 13 C 0.029 3.971 14 N -0.530 5.530 15 C 0.040 3.960 16 C 0.191 3.809 17 C -0.505 4.505 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.272 1.272 25 C -0.088 4.088 26 Cl -0.043 7.043 27 C -0.025 4.025 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.363 0.637 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.012 0.988 39 H 0.076 0.924 40 H 0.043 0.957 41 H -0.010 1.010 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 19.669 -8.405 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.282 3.718 3 O -0.340 6.340 4 C -0.214 4.214 5 C -0.031 4.031 6 C -0.236 4.236 7 C 0.133 3.867 8 O -0.190 6.190 9 C -0.053 4.053 10 C 0.057 3.943 11 H 0.134 0.866 12 O -0.332 6.332 13 C -0.100 4.100 14 N -0.254 5.254 15 C -0.108 4.108 16 C 0.066 3.934 17 C -0.544 4.544 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.115 4.115 26 Cl -0.014 7.014 27 C -0.044 4.044 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.208 0.792 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.030 0.970 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.008 0.992 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.482 19.098 -8.179 24.237 hybrid contribution 1.004 -0.159 0.496 1.131 sum -11.478 18.939 -7.683 23.441 Atomic orbital electron populations 1.22255 0.93672 1.05028 1.04967 1.22258 0.91630 0.87236 0.70698 1.90555 1.72125 1.34175 1.37176 1.20286 0.94392 0.94319 1.12372 1.21276 0.93008 0.98268 0.90504 1.21268 1.01127 0.91118 1.10063 1.19173 0.90394 0.86150 0.90996 1.86273 1.20691 1.26197 1.85832 1.23929 0.77619 1.01509 1.02210 1.21970 0.93398 0.88963 0.89972 0.86587 1.86766 1.78725 1.53385 1.14352 1.22560 0.94027 0.93242 1.00187 1.62014 1.11962 1.13513 1.37934 1.22204 0.88562 1.02307 0.97748 1.19817 0.96615 0.94128 0.82839 1.21123 1.41562 0.93255 0.98419 0.91834 1.24992 0.95421 0.98953 0.95329 1.69950 1.45138 1.35873 1.02940 0.86488 0.78079 0.84737 0.78072 1.20811 1.21237 1.19716 1.20104 0.89432 0.89128 1.12868 1.98409 1.75604 1.30308 1.97052 1.21201 1.00466 0.89090 0.93637 0.88259 0.89275 0.89460 0.84092 0.83813 0.91281 0.90631 0.79203 0.91701 0.94697 0.96995 0.90578 0.93772 0.99248 0.94968 0.92925 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.97 9.75 36.01 0.35 -0.62 16 2 C 0.40 3.42 7.22 -30.82 -0.22 3.20 16 3 O -0.46 -5.46 17.08 5.55 0.09 -5.36 16 4 C -0.21 -1.87 5.87 -105.06 -0.62 -2.49 16 5 C -0.01 -0.11 9.59 -39.14 -0.38 -0.49 16 6 C -0.22 -2.06 9.01 -39.51 -0.36 -2.41 16 7 C 0.18 2.10 6.69 -38.94 -0.26 1.84 16 8 O -0.28 -3.74 9.54 -23.60 -0.23 -3.97 16 9 C 0.02 0.27 4.37 37.16 0.16 0.43 16 10 C 0.12 1.81 3.27 -26.73 -0.09 1.72 16 11 H 0.12 2.20 6.55 -51.93 -0.34 1.86 16 12 O -0.53 -8.71 13.20 -40.08 -0.53 -9.24 16 13 C 0.03 0.46 4.63 -3.82 -0.02 0.45 16 14 N -0.53 -10.95 4.60 -244.36 -1.12 -12.08 16 15 C 0.04 0.74 9.32 60.07 0.56 1.30 16 16 C 0.19 4.87 4.57 -4.97 -0.02 4.85 16 17 C -0.50 -14.18 8.54 -34.44 -0.29 -14.47 16 18 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 21 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.09 -0.96 6.32 -39.43 -0.25 -1.21 16 26 Cl -0.04 -0.51 28.49 -51.86 -1.48 -1.98 16 27 C -0.03 -0.21 9.13 -39.10 -0.36 -0.57 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.27 6.45 -51.93 -0.33 -0.07 16 31 H 0.14 1.17 7.64 -52.49 -0.40 0.77 16 32 H 0.14 1.10 6.27 -52.48 -0.33 0.77 16 33 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 34 H 0.08 0.77 7.65 -51.93 -0.40 0.37 16 35 H 0.36 4.31 9.05 45.56 0.41 4.72 16 36 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.03 0.55 8.05 -51.92 -0.42 0.13 16 38 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 39 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 40 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 41 H -0.01 -0.28 8.11 -51.93 -0.42 -0.70 16 42 H 0.03 0.88 6.38 -51.93 -0.33 0.55 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.15 0.81 6.34 -52.49 -0.33 0.48 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -34.07 383.50 -8.90 -42.96 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.25 Total: 0.11 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.88 Total: -7.02 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.39 Total: -38.05 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.66 Total: -18.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.07 -8.90 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414126384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.745 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds