Wall clock time and date at job start Tue Mar 31 2020 22:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34876 * 116.99943 * 2 1 4 4 O 1.21610 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.46502 * 119.99919 * 180.02562 * 3 2 1 6 6 C 1.36756 * 126.18008 * 0.02562 * 5 3 2 7 7 N 1.30908 * 113.93462 * 179.76885 * 6 5 3 8 8 C 1.29400 * 117.46617 * 0.44017 * 7 6 5 9 9 C 1.50701 * 124.70568 * 179.83525 * 8 7 6 10 10 H 1.09004 * 109.47150 * 164.70012 * 9 8 7 11 11 C 1.52997 * 109.47247 * 284.69727 * 9 8 7 12 12 N 1.46498 * 109.47114 * 44.69693 * 9 8 7 13 13 C 1.34777 * 119.99828 * 154.72036 * 12 9 8 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 9 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 9 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47321 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47554 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00505 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47135 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47080 * 119.99899 * 23 21 19 26 26 H 1.48497 * 109.47104 * 240.00206 * 23 21 19 27 27 S 1.70919 * 110.58637 * 359.57279 * 8 7 6 28 28 H 1.08994 * 109.47312 * 59.99395 * 1 2 3 29 29 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46693 * 299.99663 * 1 2 3 31 31 H 1.08002 * 123.03057 * 359.97438 * 6 5 3 32 32 H 1.08997 * 109.47293 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.47189 * 300.00333 * 11 9 8 34 34 H 1.09009 * 109.47238 * 60.00212 * 11 9 8 35 35 H 0.97001 * 120.00384 * 335.00482 * 12 9 8 36 36 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 37 37 H 1.09000 * 109.47602 * 299.99940 * 16 15 13 38 38 H 1.09006 * 109.46868 * 59.99976 * 16 15 13 39 39 H 1.09000 * 109.47211 * 300.00689 * 17 16 15 40 40 H 1.09007 * 109.46376 * 60.00147 * 17 16 15 41 41 H 1.09000 * 109.47686 * 300.00577 * 18 17 16 42 42 H 1.08998 * 109.47284 * 60.00513 * 18 17 16 43 43 H 0.97010 * 119.99934 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2217 0.0005 5 6 3.5273 1.2784 -0.0006 6 6 4.3913 0.2183 -0.0016 7 7 5.6543 0.5626 -0.0068 8 6 5.9283 1.8272 -0.0013 9 6 7.3207 2.4035 -0.0023 10 1 7.2766 3.4597 -0.2682 11 6 7.9358 2.2536 1.3905 12 7 8.1447 1.6879 -0.9796 13 6 9.2131 2.2948 -1.5333 14 8 9.4961 3.4345 -1.2179 15 7 9.9679 1.6384 -2.4366 16 6 11.1297 2.2979 -3.0380 17 6 11.8069 1.3411 -4.0214 18 6 13.0197 2.0300 -4.6500 19 6 13.6864 1.0880 -5.6190 20 1 13.2849 0.0970 -5.7716 21 6 14.8089 1.4910 -6.3107 22 7 15.2981 2.6974 -6.1245 23 14 15.6348 0.3234 -7.5124 24 1 14.8945 -0.9637 -7.5402 25 1 15.6307 0.9256 -8.8699 26 1 17.0354 0.0802 -7.0830 27 16 4.4917 2.7533 -0.0001 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.0613 -0.8100 -0.0017 32 1 8.9427 2.6708 1.3899 33 1 7.3227 2.7860 2.1177 34 1 7.9799 1.1974 1.6565 35 1 7.9189 0.7787 -1.2313 36 1 9.7424 0.7291 -2.6879 37 1 10.8053 3.1938 -3.5673 38 1 11.8363 2.5740 -2.2553 39 1 12.1313 0.4453 -3.4918 40 1 11.1004 1.0646 -4.8041 41 1 12.6949 2.9256 -5.1796 42 1 13.7263 2.3069 -3.8676 43 1 16.0876 2.9811 -6.6115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425452520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:44 Heat of formation + Delta-G solvation = -80.266979 kcal Electronic energy + Delta-G solvation = -25512.807350 eV Core-core repulsion = 21492.025225 eV Total energy + Delta-G solvation = -4020.782125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03462 -40.42862 -39.66143 -36.98931 -36.25902 -35.08306 -33.36383 -32.06800 -31.13350 -30.18840 -28.08705 -26.73435 -26.49948 -23.79455 -23.18016 -22.48473 -21.02911 -20.56296 -20.07381 -19.09969 -18.21098 -17.82058 -17.05468 -16.98737 -16.49943 -16.00681 -15.63774 -15.33353 -15.06550 -14.74789 -14.43850 -14.36240 -14.14421 -14.07278 -13.79781 -13.64190 -13.06925 -12.80496 -12.46616 -12.28640 -12.11566 -11.85850 -11.80286 -11.65652 -11.45694 -11.39614 -10.92033 -10.72896 -10.56721 -10.33701 -10.20126 -10.11106 -9.86155 -9.60877 -9.44337 -9.33730 -9.10842 -8.66987 -8.37132 -6.01638 -4.04560 -0.52542 0.37043 0.99129 1.63949 2.23774 2.36650 2.76338 3.22309 3.30186 3.37765 3.39475 3.41262 4.16930 4.20779 4.32554 4.45525 4.56038 4.57418 4.64867 4.78113 4.83482 4.98907 5.26055 5.34353 5.43265 5.52017 5.67334 5.70227 5.81068 5.90178 6.17303 6.26061 6.50515 6.62244 6.77380 6.94281 7.01363 7.03473 7.08558 7.64461 7.76954 7.97404 8.07976 8.38395 8.66579 9.02365 9.59694 11.09638 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.001611 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.376397 B =17375.403816 C =18142.741543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.349 6.349 3 C 0.550 3.450 4 O -0.503 6.503 5 C -0.311 4.311 6 C 0.134 3.866 7 N -0.472 5.472 8 C 0.043 3.957 9 C 0.240 3.760 10 H 0.112 0.888 11 C -0.158 4.158 12 N -0.740 5.740 13 C 0.704 3.296 14 O -0.591 6.591 15 N -0.738 5.738 16 C 0.135 3.865 17 C -0.121 4.121 18 C 0.023 3.977 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 S 0.274 5.726 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.194 0.806 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.404 0.596 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.517 -5.503 16.880 34.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.393 3.607 4 O -0.392 6.392 5 C -0.434 4.434 6 C -0.027 4.027 7 N -0.186 5.186 8 C -0.231 4.231 9 C 0.131 3.869 10 H 0.130 0.870 11 C -0.218 4.218 12 N -0.398 5.398 13 C 0.403 3.597 14 O -0.469 6.469 15 N -0.392 5.392 16 C 0.012 3.988 17 C -0.159 4.159 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 S 0.534 5.466 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.211 0.789 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.239 0.761 36 H 0.228 0.772 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.059 -3.226 17.080 33.861 hybrid contribution -0.285 -2.441 -0.953 2.637 sum -29.344 -5.667 16.126 33.960 Atomic orbital electron populations 1.23372 0.75039 1.04206 1.02963 1.86560 1.24112 1.31510 1.84325 1.19315 0.86490 0.82009 0.72896 1.90933 1.66425 1.35717 1.46091 1.25063 0.96039 0.98682 1.23615 1.22729 0.85476 1.00665 0.93798 1.66079 1.20105 1.15862 1.16597 1.27902 1.01881 0.92796 1.00502 1.19267 0.80564 0.96416 0.90698 0.87031 1.22226 1.02456 1.03389 0.93753 1.45040 1.29797 1.18452 1.46523 1.15946 0.79656 0.84637 0.79436 1.90928 1.72636 1.17198 1.66178 1.45381 1.31055 1.18129 1.44647 1.21542 0.84865 0.96319 0.96082 1.21897 0.99318 0.98016 0.96655 1.19033 0.90956 0.95915 0.95522 1.21245 1.11205 1.00038 1.23541 0.92598 1.25026 0.97153 0.95189 0.97095 1.69977 1.23148 1.17884 1.42218 0.86532 0.79357 0.81081 0.80980 1.19781 1.21022 1.21005 1.84258 0.94793 1.05660 1.61896 0.91493 0.87496 0.91538 0.78921 0.90027 0.91378 0.91304 0.76118 0.77151 0.91860 0.91824 0.92709 0.92760 0.96228 0.96204 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.57 101.05 1.07 1.23 16 2 O -0.35 -2.47 10.37 -40.97 -0.42 -2.90 16 3 C 0.55 4.94 7.92 34.06 0.27 5.21 16 4 O -0.50 -5.71 16.76 -19.35 -0.32 -6.04 16 5 C -0.31 -2.55 6.51 -36.79 -0.24 -2.79 16 6 C 0.13 0.97 11.20 -18.48 -0.21 0.77 16 7 N -0.47 -3.97 10.10 -11.26 -0.11 -4.08 16 8 C 0.04 0.35 6.21 -13.30 -0.08 0.27 16 9 C 0.24 2.24 3.07 -69.08 -0.21 2.02 16 10 H 0.11 1.10 7.57 -51.93 -0.39 0.70 16 11 C -0.16 -1.33 9.47 37.16 0.35 -0.98 16 12 N -0.74 -7.89 5.07 -59.81 -0.30 -8.19 16 13 C 0.70 10.18 8.53 -86.92 -0.74 9.43 16 14 O -0.59 -10.74 16.00 5.28 0.08 -10.66 16 15 N -0.74 -10.39 5.56 -65.22 -0.36 -10.75 16 16 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 17 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 18 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 19 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 23 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 S 0.27 2.12 23.00 -107.50 -2.47 -0.36 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.40 3.67 8.29 -40.82 -0.34 3.34 16 36 H 0.40 4.49 8.49 -40.82 -0.35 4.15 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -34.57 391.12 -8.93 -43.50 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.11 Total: 0.98 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.51 Total: 2.16 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.04 Total: -48.99 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.66 Total: -19.60 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.57 -8.93 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425452520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.765 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds