Wall clock time and date at job start Tue Mar 31 2020 22:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65597 * 119.99791 * 2 1 4 4 O 1.42099 * 106.40164 * 178.54201 * 3 2 1 5 5 O 1.42095 * 106.40491 * 311.46656 * 3 2 1 6 6 C 1.76204 * 107.21524 * 65.00361 * 3 2 1 7 7 C 1.38235 * 120.00135 * 269.72322 * 6 3 2 8 8 C 1.38235 * 120.00113 * 179.76609 * 7 6 3 9 9 C 1.38229 * 119.99960 * 0.51321 * 8 7 6 10 10 C 1.50700 * 120.00351 * 179.72666 * 9 8 7 11 11 H 1.09002 * 109.47629 * 160.01849 * 10 9 8 12 12 C 1.53007 * 109.46750 * 280.01834 * 10 9 8 13 13 N 1.46500 * 109.47260 * 40.01546 * 10 9 8 14 14 C 1.34773 * 120.00010 * 155.00742 * 13 10 9 15 15 O 1.21582 * 119.99982 * 359.97438 * 14 13 10 16 16 N 1.34777 * 119.99916 * 180.02562 * 14 13 10 17 17 C 1.46502 * 120.00125 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46929 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00280 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99626 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99733 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47240 * 60.00637 * 22 20 18 24 24 H 1.48500 * 109.46949 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47342 * 300.00014 * 22 20 18 26 26 C 1.38236 * 119.99960 * 359.74094 * 9 8 7 27 27 C 1.38228 * 120.00063 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47073 * 299.99532 * 1 2 3 30 30 H 1.09000 * 109.47212 * 59.99615 * 1 2 3 31 31 H 0.96999 * 120.00080 * 180.02562 * 2 1 3 32 32 H 1.08002 * 119.99466 * 359.97438 * 7 6 3 33 33 H 1.08004 * 120.00136 * 180.22728 * 8 7 6 34 34 H 1.09007 * 109.47008 * 299.99419 * 12 10 9 35 35 H 1.09002 * 109.47042 * 59.99656 * 12 10 9 36 36 H 1.08994 * 109.47008 * 180.02562 * 12 10 9 37 37 H 0.97003 * 119.99729 * 334.99815 * 13 10 9 38 38 H 0.97003 * 119.99823 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.46532 * 299.99730 * 17 16 14 40 40 H 1.08998 * 109.47016 * 59.99514 * 17 16 14 41 41 H 0.97011 * 119.99809 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.00327 * 179.97438 * 26 9 8 43 43 H 1.08006 * 120.00067 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7119 2.2330 -1.0214 6 6 1.9378 2.2414 1.5255 7 6 0.8622 3.1049 1.6164 8 6 0.5806 3.7345 2.8145 9 6 1.3810 3.5087 3.9187 10 6 1.0777 4.1997 5.2231 11 1 1.5567 3.6601 6.0402 12 6 1.6110 5.6331 5.1768 13 7 -0.3713 4.2245 5.4374 14 6 -0.8662 4.3117 6.6879 15 8 -0.1101 4.3693 7.6383 16 7 -2.1993 4.3339 6.8850 17 6 -2.7373 4.4281 8.2444 18 6 -4.2432 4.4354 8.1892 19 1 -4.7490 4.3754 7.2369 20 6 -4.9754 4.5176 9.3547 21 7 -4.3594 4.5901 10.5144 22 14 -6.8421 4.5273 9.2862 23 1 -7.3206 3.2739 8.6497 24 1 -7.3874 4.6227 10.6642 25 1 -7.3022 5.6937 8.4905 26 6 2.4597 2.6492 3.8263 27 6 2.7384 2.0159 2.6296 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.9501 -0.8400 -0.0004 32 1 0.2398 3.2851 0.7523 33 1 -0.2619 4.4063 2.8865 34 1 2.6892 5.6147 5.0175 35 1 1.1321 6.1727 4.3598 36 1 1.3921 6.1328 6.1204 37 1 -0.9745 4.1783 4.6791 38 1 -2.8025 4.2876 6.1268 39 1 -2.3989 3.5727 8.8291 40 1 -2.3866 5.3487 8.7110 41 1 -4.8746 4.6483 11.3344 42 1 3.0853 2.4731 4.6889 43 1 3.5815 1.3447 2.5573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426414171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:11 Heat of formation + Delta-G solvation = -81.413582 kcal Electronic energy + Delta-G solvation = -26711.287011 eV Core-core repulsion = 22690.455165 eV Total energy + Delta-G solvation = -4020.831846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25842 -39.00095 -37.62182 -36.23944 -35.71792 -35.42734 -34.10454 -32.51907 -31.69221 -31.31610 -29.51431 -27.02099 -26.45993 -24.56286 -23.41876 -22.72686 -21.22055 -20.18567 -19.90635 -18.61992 -18.27166 -17.86948 -16.84624 -16.51245 -16.07160 -15.66079 -15.25269 -15.00350 -14.80128 -14.72742 -14.55355 -14.23442 -13.95663 -13.79477 -13.68468 -13.31685 -13.21984 -12.91770 -12.76185 -12.47522 -12.39821 -12.09102 -12.06483 -11.98563 -11.84621 -11.70171 -11.34215 -11.03889 -10.97894 -10.89746 -10.33379 -10.11179 -9.65535 -9.46369 -9.42035 -9.40848 -8.90968 -8.73625 -7.83188 -6.18202 -4.25073 -0.02603 0.40550 0.91991 2.57064 3.02028 3.23386 3.25287 3.29038 3.32390 3.41425 3.85491 3.93908 4.26558 4.30052 4.39715 4.49320 4.55552 4.90191 4.94814 4.98139 5.01428 5.17773 5.19329 5.21625 5.27997 5.28826 5.34719 5.52330 5.57900 5.67039 5.74968 5.81873 6.09020 6.19319 6.42234 6.43238 6.73986 7.03888 7.45360 7.49817 7.53070 7.84908 7.99676 8.71765 8.87637 9.26646 9.43591 10.91927 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002132 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.570931 B =13131.558494 C =14196.754278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.699 3.301 4 O -0.960 6.960 5 O -0.957 6.957 6 C -0.683 4.683 7 C -0.018 4.018 8 C -0.134 4.134 9 C -0.024 4.024 10 C 0.194 3.806 11 H 0.101 0.899 12 C -0.159 4.159 13 N -0.753 5.753 14 C 0.695 3.305 15 O -0.598 6.598 16 N -0.728 5.728 17 C 0.268 3.732 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.129 4.129 27 C -0.015 4.015 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.419 0.581 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.391 0.609 38 H 0.386 0.614 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.266 0.734 42 H 0.137 0.863 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -7.862 -22.405 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.950 6.950 5 O -0.947 6.947 6 C -0.770 4.770 7 C -0.037 4.037 8 C -0.153 4.153 9 C -0.025 4.025 10 C 0.088 3.912 11 H 0.119 0.881 12 C -0.218 4.218 13 N -0.411 5.411 14 C 0.394 3.606 15 O -0.477 6.477 16 N -0.380 5.380 17 C 0.146 3.854 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.148 4.148 27 C -0.034 4.034 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.253 0.747 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.155 0.845 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.115 -7.313 -21.904 26.557 hybrid contribution -1.773 -0.285 0.142 1.801 sum 11.343 -7.598 -21.763 25.690 Atomic orbital electron populations 1.21532 0.78208 1.04508 1.02220 1.55305 1.16354 1.24353 1.92056 1.01744 0.72823 0.72698 0.73926 1.93597 1.30786 1.83415 1.87226 1.93591 1.78707 1.68418 1.53939 1.30815 1.07928 1.16627 1.21671 1.20910 0.93313 0.91503 0.97996 1.21115 1.00632 1.01159 0.92437 1.20473 0.93651 0.93158 0.95263 1.19658 0.81797 0.96269 0.93456 0.88089 1.22203 1.00815 0.95397 1.03341 1.45298 1.06140 1.82196 1.07509 1.16114 0.83607 0.78287 0.82542 1.90874 1.57936 1.58520 1.40399 1.45735 1.03350 1.76768 1.12146 1.18985 0.92761 0.97522 0.76082 1.21178 0.90613 1.53085 0.93296 0.92018 1.24944 0.99224 0.94742 0.95100 1.69968 1.36036 1.48532 0.97702 0.86467 0.84462 0.78644 0.77259 1.20099 1.21064 1.20088 1.21196 0.97991 0.97215 0.98429 1.20890 0.95990 0.95547 0.91008 0.89745 0.91940 0.91191 0.74690 0.84072 0.84809 0.91731 0.92350 0.90764 0.77514 0.78179 0.95735 0.95707 0.92376 0.84477 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.14 59.85 0.67 1.01 16 2 N -1.12 -6.00 6.19 -16.63 -0.10 -6.10 16 3 S 2.70 22.64 5.74 -107.50 -0.62 22.02 16 4 O -0.96 -10.48 17.28 -57.17 -0.99 -11.47 16 5 O -0.96 -10.57 17.00 -57.17 -0.97 -11.55 16 6 C -0.68 -5.88 5.95 -39.58 -0.24 -6.12 16 7 C -0.02 -0.15 9.52 -39.58 -0.38 -0.53 16 8 C -0.13 -1.19 9.05 -39.59 -0.36 -1.55 16 9 C -0.02 -0.24 4.95 -104.63 -0.52 -0.76 16 10 C 0.19 2.36 2.78 -69.08 -0.19 2.17 16 11 H 0.10 1.39 7.44 -51.93 -0.39 1.00 16 12 C -0.16 -1.81 9.46 37.16 0.35 -1.46 16 13 N -0.75 -10.47 5.03 -59.81 -0.30 -10.77 16 14 C 0.69 13.67 8.53 -86.92 -0.74 12.93 16 15 O -0.60 -14.30 16.01 5.29 0.08 -14.22 16 16 N -0.73 -15.06 5.55 -66.42 -0.37 -15.43 16 17 C 0.27 7.03 5.43 -5.19 -0.03 7.00 16 18 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 19 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 22 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.13 -1.18 9.67 -39.59 -0.38 -1.56 16 27 C -0.02 -0.13 9.52 -39.59 -0.38 -0.51 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.42 1.44 8.96 -34.47 -0.31 1.13 16 32 H 0.14 0.95 7.61 -52.49 -0.40 0.55 16 33 H 0.13 0.97 6.92 -52.48 -0.36 0.61 16 34 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.39 4.30 6.89 -40.82 -0.28 4.02 16 38 H 0.39 6.76 8.34 -40.82 -0.34 6.42 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 43 H 0.14 0.98 7.62 -52.48 -0.40 0.58 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -37.11 380.49 -10.24 -47.35 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.81 Total: 6.57 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.61 Total: -2.59 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.04 Total: -57.41 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.88 Total: -37.23 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 22.64 SS G_CDS: -0.62 Total: 22.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.11 -10.24 -47.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.067 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds