Wall clock time and date at job start Tue Mar 31 2020 23:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47437 * 2 1 4 4 S 1.65599 * 120.00418 * 164.99857 * 3 2 1 5 5 O 1.42100 * 106.40241 * 311.46108 * 4 3 2 6 6 O 1.42096 * 106.40379 * 178.53729 * 4 3 2 7 7 C 1.76199 * 107.21658 * 65.00023 * 4 3 2 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 3 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00010 * 0.50740 * 9 8 7 11 11 C 1.50706 * 119.99834 * 179.72215 * 10 9 8 12 12 N 1.46493 * 109.47238 * 270.02292 * 11 10 9 13 13 C 1.34776 * 119.99928 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00396 * 359.97438 * 13 12 11 15 15 N 1.34786 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.46494 * 119.99938 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46927 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00054 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99942 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46945 * 120.00146 * 21 19 17 24 24 H 1.48494 * 109.47374 * 239.99985 * 21 19 17 25 25 C 1.38229 * 119.99860 * 359.74632 * 10 9 8 26 26 C 1.38234 * 120.00019 * 90.00010 * 7 4 3 27 27 H 1.08992 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46889 * 300.00282 * 1 2 3 29 29 H 1.09005 * 109.47067 * 59.99917 * 1 2 3 30 30 H 1.09005 * 109.47495 * 240.00319 * 2 1 3 31 31 H 1.08996 * 109.47189 * 119.99817 * 2 1 3 32 32 H 0.97001 * 119.99713 * 345.00063 * 3 2 1 33 33 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 34 34 H 1.08004 * 120.00393 * 180.23620 * 9 8 7 35 35 H 1.08991 * 109.47127 * 30.02677 * 11 10 9 36 36 H 1.09005 * 109.46919 * 150.02736 * 11 10 9 37 37 H 0.97001 * 119.99901 * 0.02562 * 12 11 10 38 38 H 0.97001 * 119.99700 * 359.97438 * 15 13 12 39 39 H 1.08994 * 109.47540 * 299.99881 * 16 15 13 40 40 H 1.09005 * 109.47160 * 60.00028 * 16 15 13 41 41 H 0.96992 * 119.99756 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99920 * 179.97438 * 25 10 9 43 43 H 1.07999 * 120.00005 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8849 0.9833 1.5647 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9737 -0.8932 8 6 5.0395 -0.3263 -0.7575 9 6 5.8114 -0.8978 -1.7517 10 6 6.1420 -0.1659 -2.8768 11 6 6.9887 -0.7870 -3.9578 12 7 8.4037 -0.5329 -3.6761 13 6 9.3515 -0.9974 -4.5142 14 8 9.0323 -1.6276 -5.5038 15 7 10.6535 -0.7641 -4.2549 16 6 11.6837 -1.2695 -5.1655 17 6 13.0448 -0.8753 -4.6525 18 1 13.1335 -0.3057 -3.7391 19 6 14.1769 -1.2427 -5.3485 20 7 14.0689 -1.9367 -6.4604 21 14 15.8640 -0.7535 -4.7129 22 1 15.7137 0.0181 -3.4531 23 1 16.6678 -1.9746 -4.4521 24 1 16.5516 0.0843 -5.7280 25 6 5.6963 1.1358 -3.0101 26 6 4.9200 1.7056 -2.0183 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4150 2.1089 -0.2174 33 1 4.7846 -0.8968 0.1234 34 1 6.1599 -1.9148 -1.6474 35 1 6.8111 -1.8619 -3.9858 36 1 6.7259 -0.3500 -4.9212 37 1 8.6585 -0.0305 -2.8865 38 1 10.9082 -0.2617 -3.4652 39 1 11.6172 -2.3559 -5.2225 40 1 11.5324 -0.8437 -6.1575 41 1 14.8653 -2.1949 -6.9502 42 1 5.9549 1.7078 -3.8889 43 1 4.5724 2.7228 -2.1221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426417110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:33 Heat of formation + Delta-G solvation = -86.267217 kcal Electronic energy + Delta-G solvation = -26112.619384 eV Core-core repulsion = 22091.577069 eV Total energy + Delta-G solvation = -4021.042315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01704 -38.98899 -37.66706 -36.41199 -36.23960 -35.03912 -34.05932 -32.43195 -31.54416 -31.48192 -30.27714 -27.60810 -26.00050 -23.56425 -23.18857 -22.76260 -21.92337 -20.26365 -20.02470 -18.55935 -18.23026 -17.75696 -16.79839 -16.47256 -16.01240 -15.79848 -15.45254 -15.30607 -15.05818 -14.71817 -14.67836 -14.56953 -13.95277 -13.73918 -13.68458 -13.32543 -13.03861 -12.91526 -12.52796 -12.51510 -12.42138 -12.26303 -12.23511 -11.98984 -11.97639 -11.81153 -11.54108 -11.16543 -10.93536 -10.91462 -10.31774 -10.08178 -9.86710 -9.44752 -9.38831 -9.35609 -8.88439 -8.71673 -7.80250 -6.16559 -4.23085 -0.06864 0.33391 0.89871 2.50979 2.94949 3.23719 3.30139 3.32328 3.34686 3.56148 3.87367 3.90257 4.30678 4.32910 4.33944 4.36764 4.48345 4.54741 4.72340 4.91193 4.91298 5.01343 5.07590 5.19747 5.26113 5.32166 5.33025 5.40307 5.57555 5.58786 5.64255 5.65919 5.73564 6.12285 6.40127 6.41037 6.70308 7.06067 7.47526 7.52767 7.54896 7.86957 8.01613 8.74372 8.89647 9.28336 9.45585 10.93708 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.001793 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.099051 B =15612.101279 C =16202.674366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -1.118 6.118 4 S 2.697 3.303 5 O -0.956 6.956 6 O -0.958 6.958 7 C -0.676 4.676 8 C -0.024 4.024 9 C -0.121 4.121 10 C -0.042 4.042 11 C 0.174 3.826 12 N -0.755 5.755 13 C 0.694 3.306 14 O -0.600 6.600 15 N -0.728 5.728 16 C 0.266 3.734 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.121 4.121 26 C -0.021 4.021 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.419 0.581 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.393 0.607 38 H 0.387 0.613 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.265 0.735 42 H 0.137 0.863 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.992 5.865 13.888 32.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.879 5.879 4 S 2.787 3.213 5 O -0.946 6.946 6 O -0.948 6.948 7 C -0.764 4.764 8 C -0.043 4.043 9 C -0.140 4.140 10 C -0.043 4.043 11 C 0.049 3.951 12 N -0.413 5.413 13 C 0.394 3.606 14 O -0.479 6.479 15 N -0.380 5.380 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.140 4.140 26 C -0.040 4.040 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.219 0.781 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.155 0.845 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -28.699 5.452 13.533 32.195 hybrid contribution 1.111 0.577 0.154 1.262 sum -27.588 6.029 13.687 31.382 Atomic orbital electron populations 1.21959 0.93876 1.03203 1.02840 1.21315 0.96667 0.81286 1.02388 1.55580 1.28698 1.14963 1.88687 1.01779 0.72372 0.73262 0.73899 1.93595 1.83802 1.74537 1.42647 1.93605 1.85180 1.29128 1.86929 1.30873 1.20921 1.06574 1.17996 1.20936 0.93139 0.92352 0.97914 1.21307 0.98547 1.00893 0.93276 1.20404 0.94862 0.94032 0.94993 1.20026 0.79272 1.00446 0.95338 1.45124 1.04694 1.62286 1.29186 1.16124 0.81385 0.80262 0.82872 1.90881 1.81510 1.46309 1.29196 1.45732 1.04046 1.58628 1.29547 1.19004 0.83163 0.94866 0.88440 1.21267 0.90487 1.36410 1.09879 0.91873 1.24950 0.99550 0.94788 0.94762 1.69988 1.29708 1.37021 1.15556 0.86349 0.83348 0.78306 0.78816 1.19667 1.20808 1.20802 1.21313 0.98120 0.94812 0.99798 1.20917 0.93444 0.98870 0.90762 0.90803 0.91704 0.91842 0.91520 0.90055 0.74673 0.84087 0.84486 0.90500 0.90514 0.77346 0.78080 0.95678 0.95686 0.92507 0.84501 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.42 10.05 37.16 0.37 -0.05 16 2 C 0.11 0.43 6.94 -4.04 -0.03 0.41 16 3 N -1.12 -5.52 6.00 -10.61 -0.06 -5.59 16 4 S 2.70 22.08 5.74 -107.50 -0.62 21.46 16 5 O -0.96 -10.44 16.75 -57.17 -0.96 -11.40 16 6 O -0.96 -10.46 17.28 -57.17 -0.99 -11.44 16 7 C -0.68 -5.62 5.95 -39.58 -0.24 -5.86 16 8 C -0.02 -0.20 9.52 -39.58 -0.38 -0.57 16 9 C -0.12 -1.04 9.70 -39.59 -0.38 -1.42 16 10 C -0.04 -0.40 5.25 -104.62 -0.55 -0.95 16 11 C 0.17 2.08 5.80 -5.19 -0.03 2.05 16 12 N -0.75 -10.83 5.55 -66.42 -0.37 -11.20 16 13 C 0.69 14.03 8.57 -86.91 -0.74 13.29 16 14 O -0.60 -14.71 16.34 5.29 0.09 -14.62 16 15 N -0.73 -15.47 5.55 -66.41 -0.37 -15.84 16 16 C 0.27 7.12 5.43 -5.19 -0.03 7.09 16 17 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.12 -1.06 9.70 -39.59 -0.38 -1.45 16 26 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.34 7.75 -51.93 -0.40 -0.07 16 32 H 0.42 1.32 8.65 -34.47 -0.30 1.02 16 33 H 0.14 0.91 7.61 -52.48 -0.40 0.51 16 34 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 37 H 0.39 4.71 8.48 -40.82 -0.35 4.36 16 38 H 0.39 7.06 8.34 -40.82 -0.34 6.72 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.14 0.96 7.62 -52.49 -0.40 0.56 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -37.57 384.02 -10.90 -48.47 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.94 Total: 5.31 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.18 Total: -1.46 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.06 Total: -58.01 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.86 Total: -37.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 22.08 SS G_CDS: -0.62 Total: 21.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.57 -10.90 -48.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.795 kcal (2) G-P(sol) polarization free energy of solvation -37.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds