Wall clock time and date at job start Tue Mar 31 2020 23:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47437 * 2 1 4 4 S 1.65599 * 120.00418 * 164.99857 * 3 2 1 5 5 O 1.42100 * 106.40241 * 311.46108 * 4 3 2 6 6 O 1.42096 * 106.40379 * 178.53729 * 4 3 2 7 7 C 1.76199 * 107.21658 * 65.00023 * 4 3 2 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 3 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00010 * 0.50740 * 9 8 7 11 11 C 1.50706 * 119.99834 * 179.72215 * 10 9 8 12 12 N 1.46493 * 109.47238 * 270.02292 * 11 10 9 13 13 C 1.34776 * 119.99928 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00396 * 359.97438 * 13 12 11 15 15 N 1.34786 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.46494 * 119.99938 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46927 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00054 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99942 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46945 * 120.00146 * 21 19 17 24 24 H 1.48494 * 109.47374 * 239.99985 * 21 19 17 25 25 C 1.38229 * 119.99860 * 359.74632 * 10 9 8 26 26 C 1.38234 * 120.00019 * 90.00010 * 7 4 3 27 27 H 1.08992 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46889 * 300.00282 * 1 2 3 29 29 H 1.09005 * 109.47067 * 59.99917 * 1 2 3 30 30 H 1.09005 * 109.47495 * 240.00319 * 2 1 3 31 31 H 1.08996 * 109.47189 * 119.99817 * 2 1 3 32 32 H 0.97001 * 119.99713 * 345.00063 * 3 2 1 33 33 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 34 34 H 1.08004 * 120.00393 * 180.23620 * 9 8 7 35 35 H 1.08991 * 109.47127 * 30.02677 * 11 10 9 36 36 H 1.09005 * 109.46919 * 150.02736 * 11 10 9 37 37 H 0.97001 * 119.99901 * 0.02562 * 12 11 10 38 38 H 0.97001 * 119.99700 * 359.97438 * 15 13 12 39 39 H 1.08994 * 109.47540 * 299.99881 * 16 15 13 40 40 H 1.09005 * 109.47160 * 60.00028 * 16 15 13 41 41 H 0.96992 * 119.99756 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99920 * 179.97438 * 25 10 9 43 43 H 1.07999 * 120.00005 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8849 0.9833 1.5647 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9737 -0.8932 8 6 5.0395 -0.3263 -0.7575 9 6 5.8114 -0.8978 -1.7517 10 6 6.1420 -0.1659 -2.8768 11 6 6.9887 -0.7870 -3.9578 12 7 8.4037 -0.5329 -3.6761 13 6 9.3515 -0.9974 -4.5142 14 8 9.0323 -1.6276 -5.5038 15 7 10.6535 -0.7641 -4.2549 16 6 11.6837 -1.2695 -5.1655 17 6 13.0448 -0.8753 -4.6525 18 1 13.1335 -0.3057 -3.7391 19 6 14.1769 -1.2427 -5.3485 20 7 14.0689 -1.9367 -6.4604 21 14 15.8640 -0.7535 -4.7129 22 1 15.7137 0.0181 -3.4531 23 1 16.6678 -1.9746 -4.4521 24 1 16.5516 0.0843 -5.7280 25 6 5.6963 1.1358 -3.0101 26 6 4.9200 1.7056 -2.0183 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4150 2.1089 -0.2174 33 1 4.7846 -0.8968 0.1234 34 1 6.1599 -1.9148 -1.6474 35 1 6.8111 -1.8619 -3.9858 36 1 6.7259 -0.3500 -4.9212 37 1 8.6585 -0.0305 -2.8865 38 1 10.9082 -0.2617 -3.4652 39 1 11.6172 -2.3559 -5.2225 40 1 11.5324 -0.8437 -6.1575 41 1 14.8653 -2.1949 -6.9502 42 1 5.9549 1.7078 -3.8889 43 1 4.5724 2.7228 -2.1221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426417110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:32 Heat of formation + Delta-G solvation = -116.925906 kcal Electronic energy + Delta-G solvation = -26113.948844 eV Core-core repulsion = 22091.577069 eV Total energy + Delta-G solvation = -4022.371775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11327 -40.24376 -38.41330 -37.02307 -36.78054 -36.44434 -35.83719 -34.37430 -32.62421 -32.13723 -30.59425 -29.39698 -27.26843 -24.61349 -24.05022 -23.65595 -22.88698 -21.91358 -20.63798 -19.90993 -19.15189 -18.45838 -18.11739 -17.50285 -17.39389 -16.80109 -16.52906 -16.30797 -16.21531 -15.73994 -15.54177 -15.46677 -15.05273 -14.88790 -14.64002 -14.32656 -14.19155 -14.04098 -13.93180 -13.53999 -13.28834 -13.20744 -13.10800 -12.86673 -12.75003 -12.74032 -12.56924 -12.42683 -12.25810 -12.22222 -11.85006 -11.44963 -11.36076 -10.81753 -10.49519 -10.38768 -10.33409 -10.09511 -9.61937 -8.28635 -6.44695 -0.71291 -0.37975 0.24273 1.43774 1.44884 1.58033 1.77331 2.03739 2.21603 2.37543 2.48140 2.74932 3.06546 3.25314 3.46072 3.57063 3.69755 3.87749 4.05586 4.18171 4.26809 4.30594 4.47707 4.55031 4.55801 4.67053 4.68609 4.91786 5.00378 5.01664 5.08605 5.11542 5.16791 5.27680 5.37564 5.39441 5.41571 5.48950 5.65638 5.74284 5.85147 6.08154 6.21270 6.67209 7.23694 7.27655 7.68829 8.83813 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.001793 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.099051 B =15612.101279 C =16202.674366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -1.107 6.107 4 S 2.716 3.284 5 O -0.984 6.984 6 O -0.987 6.987 7 C -0.674 4.674 8 C -0.027 4.027 9 C -0.121 4.121 10 C -0.048 4.048 11 C 0.174 3.826 12 N -0.730 5.730 13 C 0.694 3.306 14 O -0.646 6.646 15 N -0.723 5.723 16 C 0.285 3.715 17 C -0.555 4.555 18 H 0.083 0.917 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.255 1.255 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.123 4.123 26 C -0.026 4.026 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.428 0.572 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.404 0.596 39 H -0.013 1.013 40 H -0.013 1.013 41 H 0.269 0.731 42 H 0.147 0.853 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.543 6.804 15.686 34.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.871 5.871 4 S 2.807 3.193 5 O -0.974 6.974 6 O -0.977 6.977 7 C -0.762 4.762 8 C -0.046 4.046 9 C -0.140 4.140 10 C -0.049 4.049 11 C 0.051 3.949 12 N -0.388 5.388 13 C 0.393 3.607 14 O -0.528 6.528 15 N -0.377 5.377 16 C 0.161 3.839 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.809 3.191 22 H -0.178 1.178 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.142 4.142 26 C -0.045 4.045 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.265 0.735 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.239 0.761 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.078 0.922 42 H 0.164 0.836 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -29.310 6.442 15.406 33.733 hybrid contribution 1.115 0.266 -0.400 1.214 sum -28.195 6.707 15.006 32.636 Atomic orbital electron populations 1.21970 0.92725 1.03960 1.03113 1.21535 0.97676 0.80468 1.02867 1.55305 1.27403 1.15976 1.88402 1.01002 0.72803 0.72171 0.73358 1.93559 1.84629 1.74909 1.44299 1.93562 1.85949 1.30927 1.87280 1.30921 1.20784 1.06698 1.17807 1.21153 0.92765 0.92403 0.98317 1.21452 0.98295 1.01387 0.92886 1.20149 0.95471 0.94508 0.94740 1.20113 0.77800 1.00662 0.96362 1.44895 1.04814 1.60774 1.28282 1.16248 0.81619 0.79881 0.82905 1.90850 1.82203 1.48338 1.31458 1.45320 1.03847 1.59032 1.29469 1.18427 0.85072 0.92401 0.87961 1.21636 0.90577 1.36518 1.10558 0.89935 1.26045 1.04326 0.94416 0.94758 1.70143 1.31212 1.38306 1.17163 0.85101 0.77282 0.78051 0.78686 1.17831 1.20432 1.20438 1.21445 0.97910 0.94567 1.00263 1.21116 0.93289 0.99575 0.90563 0.89810 0.91790 0.91241 0.90480 0.90260 0.73480 0.82509 0.83378 0.90717 0.90840 0.75491 0.76051 0.99464 0.99490 0.92234 0.83556 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 10.05 71.98 0.72 0.19 16 2 C 0.10 0.61 6.94 86.38 0.60 1.21 16 3 N -1.11 -9.15 6.00 -187.49 -1.12 -10.27 16 4 S 2.72 41.05 5.74 -56.49 -0.32 40.73 16 5 O -0.98 -20.47 16.75 -128.00 -2.14 -22.61 16 6 O -0.99 -20.56 17.28 -128.00 -2.21 -22.77 16 7 C -0.67 -10.02 5.95 22.27 0.13 -9.88 16 8 C -0.03 -0.39 9.52 22.27 0.21 -0.17 16 9 C -0.12 -1.84 9.70 22.27 0.22 -1.63 16 10 C -0.05 -0.83 5.25 -19.87 -0.10 -0.93 16 11 C 0.17 4.00 5.80 85.64 0.50 4.50 16 12 N -0.73 -20.23 5.55 -482.30 -2.68 -22.91 16 13 C 0.69 28.25 8.57 179.05 1.53 29.78 16 14 O -0.65 -32.61 16.34 -3.99 -0.07 -32.67 16 15 N -0.72 -30.95 5.55 -482.29 -2.68 -33.63 16 16 C 0.28 15.74 5.43 85.64 0.46 16.20 16 17 C -0.55 -30.28 9.28 25.60 0.24 -30.04 16 18 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 19 C 0.00 0.23 5.46 84.65 0.46 0.69 16 20 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 21 Si 0.99 42.41 29.54 68.60 2.03 44.44 16 22 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 C -0.12 -1.93 9.70 22.27 0.22 -1.71 16 26 C -0.03 -0.39 9.52 22.27 0.21 -0.18 16 27 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.08 0.54 7.75 -2.39 -0.02 0.52 16 32 H 0.43 1.99 8.65 -96.74 -0.84 1.15 16 33 H 0.16 1.69 7.61 -2.91 -0.02 1.67 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.07 1.77 8.09 -2.38 -0.02 1.75 16 37 H 0.41 9.00 8.48 -92.71 -0.79 8.22 16 38 H 0.40 14.32 8.34 -92.71 -0.77 13.55 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.15 1.83 7.62 -2.91 -0.02 1.81 16 Total: -1.00 -82.39 384.02 -4.84 -87.23 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -1.33 Total: 20.17 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.40 Total: 8.03 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -6.20 Total: -122.54 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: -4.42 Total: -78.05 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 41.05 SS G_CDS: -0.32 Total: 40.73 kcal Total: -82.39 -4.84 -87.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.696 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds