Wall clock time and date at job start Tue Mar 31 2020 22:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 N 1.46502 * 109.46944 * 240.00067 * 2 1 3 5 5 C 1.34776 * 120.00080 * 82.13290 * 4 2 1 6 6 O 1.21586 * 120.00012 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00087 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00036 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47212 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99527 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99890 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00629 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99765 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47251 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47038 * 119.99939 * 13 11 9 16 16 H 1.48499 * 109.47221 * 239.99405 * 13 11 9 17 17 C 1.50698 * 109.47050 * 120.00054 * 2 1 3 18 18 C 1.38122 * 120.03688 * 92.37718 * 17 2 1 19 19 C 1.38268 * 120.07392 * 180.27356 * 18 17 2 20 20 C 1.38308 * 120.14942 * 359.74103 * 19 18 17 21 21 C 1.38082 * 120.07187 * 359.97438 * 20 19 18 22 22 C 1.38886 * 120.03738 * 272.11773 * 17 2 1 23 23 N 1.39672 * 120.07603 * 359.97438 * 22 17 2 24 24 S 1.65597 * 120.00211 * 213.87766 * 23 22 17 25 25 C 1.81399 * 104.44985 * 59.97149 * 24 23 22 26 26 O 1.42100 * 104.27736 * 176.04443 * 24 23 22 27 27 O 1.42102 * 104.27744 * 303.89723 * 24 23 22 28 28 H 1.09003 * 109.47441 * 60.00040 * 1 2 3 29 29 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47034 * 300.00189 * 1 2 3 31 31 H 0.97001 * 119.99671 * 262.13246 * 4 2 1 32 32 H 0.97001 * 119.99664 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47294 * 300.00343 * 8 7 5 34 34 H 1.09004 * 109.46995 * 60.00028 * 8 7 5 35 35 H 0.97002 * 120.00577 * 180.02562 * 12 11 9 36 36 H 1.08007 * 119.96887 * 0.02562 * 18 17 2 37 37 H 1.08002 * 119.92717 * 179.71953 * 19 18 17 38 38 H 1.07996 * 119.96358 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.03422 * 180.02562 * 21 20 19 40 40 H 0.97003 * 119.99784 * 33.87741 * 23 22 17 41 41 H 1.08993 * 109.47197 * 60.00098 * 25 24 23 42 42 H 1.09008 * 109.47103 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47123 * 299.99647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.0923 -0.0336 -2.3707 6 8 1.7542 1.1324 -2.4373 7 7 2.5420 -0.6688 -3.4710 8 6 2.6229 0.0455 -4.7475 9 6 3.1522 -0.8829 -5.8100 10 1 3.4035 -1.9029 -5.5594 11 6 3.3165 -0.4299 -7.1017 12 7 3.0109 0.8124 -7.4069 13 14 3.9732 -1.5805 -8.4186 14 1 4.2393 -2.9144 -7.8227 15 1 2.9691 -1.7144 -9.5045 16 1 5.2338 -1.0273 -8.9756 17 6 2.0323 -0.7104 1.2304 18 6 2.3095 -2.0627 1.1833 19 6 2.7650 -2.7164 2.3133 20 6 2.9498 -2.0182 3.4928 21 6 2.6802 -0.6649 3.5452 22 6 2.2221 -0.0050 2.4117 23 7 1.9485 1.3637 2.4613 24 16 2.8627 2.3567 3.4207 25 6 4.5514 2.1715 2.7846 26 8 2.3673 3.6604 3.1483 27 8 2.7534 1.7879 4.7183 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2884 -1.6207 -1.1429 32 1 2.8120 -1.5989 -3.4177 33 1 1.6304 0.3946 -5.0321 34 1 3.2926 0.8994 -4.6442 35 1 3.1262 1.1310 -8.3158 36 1 2.1665 -2.6110 0.2638 37 1 2.9767 -3.7748 2.2749 38 1 3.3053 -2.5319 4.3737 39 1 2.8250 -0.1202 4.4665 40 1 1.2229 1.7327 1.9337 41 1 4.5810 2.4763 1.7386 42 1 5.2290 2.7975 3.3652 43 1 4.8588 1.1291 2.8682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426437256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:45 Heat of formation + Delta-G solvation = -70.086850 kcal Electronic energy + Delta-G solvation = -27533.471701 eV Core-core repulsion = 23513.131020 eV Total energy + Delta-G solvation = -4020.340682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51499 -39.07409 -37.56071 -36.42825 -35.61231 -35.43612 -34.07713 -32.44583 -31.18764 -29.97108 -29.84375 -28.92565 -27.00598 -24.18096 -23.27693 -22.49985 -21.02809 -20.14313 -19.85920 -18.66250 -18.04632 -17.70777 -16.80796 -16.66755 -15.96096 -15.84795 -15.49461 -15.10793 -14.81752 -14.56490 -14.35402 -14.09719 -13.84413 -13.68825 -13.62796 -13.53798 -13.04778 -12.86464 -12.65530 -12.53438 -12.38390 -12.35885 -11.99317 -11.94001 -11.75960 -11.64331 -11.35140 -11.13823 -10.95663 -10.92769 -10.79849 -10.32583 -9.47372 -9.37628 -9.18130 -8.88950 -8.73751 -8.54285 -7.80794 -6.17539 -4.24154 -0.24875 0.99707 1.02054 2.13389 3.21102 3.22255 3.27674 3.30192 3.33153 3.42320 3.77222 3.88866 4.30698 4.30988 4.36052 4.52401 4.60684 4.65980 4.78702 4.98871 5.08003 5.18731 5.18978 5.28642 5.32233 5.35854 5.54657 5.60255 5.75400 5.87397 5.94472 6.19097 6.19651 6.25806 6.42601 6.71347 6.80579 7.06990 7.47670 7.52168 7.54510 7.86859 8.01132 8.73778 8.89891 9.29111 9.45132 10.92688 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.002528 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.390668 B =11075.303994 C =11868.285761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.202 3.798 3 H 0.094 0.906 4 N -0.752 5.752 5 C 0.694 3.306 6 O -0.599 6.599 7 N -0.728 5.728 8 C 0.267 3.733 9 C -0.542 4.542 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.104 4.104 18 C -0.090 4.090 19 C -0.129 4.129 20 C -0.092 4.092 21 C -0.174 4.174 22 C 0.162 3.838 23 N -1.054 6.054 24 S 2.608 3.392 25 C -0.667 4.667 26 O -0.948 6.948 27 O -0.950 6.950 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.390 0.610 32 H 0.386 0.614 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.162 0.838 40 H 0.429 0.571 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -5.499 24.479 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.096 3.904 3 H 0.111 0.889 4 N -0.411 5.411 5 C 0.393 3.607 6 O -0.478 6.478 7 N -0.380 5.380 8 C 0.146 3.854 9 C -0.580 4.580 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.149 4.149 20 C -0.111 4.111 21 C -0.195 4.195 22 C 0.065 3.935 23 N -0.804 5.804 24 S 2.702 3.298 25 C -0.818 4.818 26 O -0.938 6.938 27 O -0.940 6.940 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.218 0.782 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.179 0.821 40 H 0.267 0.733 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.645 -3.679 25.010 25.287 hybrid contribution 0.734 -1.610 -1.552 2.353 sum 1.378 -5.289 23.458 24.086 Atomic orbital electron populations 1.22223 0.94460 1.02585 1.02727 1.19398 0.93879 0.96408 0.80725 0.88856 1.45328 1.72794 1.15025 1.07963 1.16140 0.79085 0.85146 0.80306 1.90873 1.56475 1.15534 1.84908 1.45725 1.67791 1.15037 1.09474 1.18986 0.97439 0.92238 0.76747 1.21253 1.45133 0.97840 0.93775 0.91920 1.24944 0.95244 0.95317 0.98539 1.69985 1.47085 1.15140 1.20028 0.86363 0.78592 0.80587 0.81347 1.19674 1.20807 1.20827 1.19901 1.02528 0.94734 0.93737 1.20838 0.98204 0.93131 0.98773 1.21187 1.00498 1.00276 0.92898 1.21033 0.98525 0.93432 0.98123 1.21944 1.03626 0.96122 0.97843 1.17181 1.00360 0.82558 0.93444 1.53487 1.46793 1.15397 1.64690 1.05092 0.77169 0.73121 0.74390 1.30443 1.24432 1.12384 1.14571 1.93657 1.78012 1.37169 1.85012 1.93551 1.85685 1.77640 1.37136 0.90772 0.92180 0.92149 0.77416 0.78198 0.95714 0.95753 0.92500 0.85446 0.85550 0.85288 0.82056 0.73289 0.84530 0.84813 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.39 37.16 0.35 -1.52 16 2 C 0.20 2.47 2.17 -69.08 -0.15 2.32 16 3 H 0.09 1.26 6.79 -51.93 -0.35 0.91 16 4 N -0.75 -10.44 5.04 -59.81 -0.30 -10.74 16 5 C 0.69 13.61 8.49 -86.92 -0.74 12.87 16 6 O -0.60 -14.24 15.95 5.29 0.08 -14.15 16 7 N -0.73 -15.03 5.55 -66.42 -0.37 -15.40 16 8 C 0.27 7.01 5.43 -5.20 -0.03 6.98 16 9 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 10 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.88 -25.87 13.29 55.43 0.74 -25.14 16 13 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 C -0.10 -1.03 5.06 -104.43 -0.53 -1.56 16 18 C -0.09 -0.77 9.18 -39.61 -0.36 -1.13 16 19 C -0.13 -0.95 10.04 -39.54 -0.40 -1.34 16 20 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 21 C -0.17 -1.50 9.24 -39.38 -0.36 -1.87 16 22 C 0.16 1.50 6.12 -83.79 -0.51 0.99 16 23 N -1.05 -9.20 5.14 32.41 0.17 -9.03 16 24 S 2.61 22.22 5.85 -107.50 -0.63 21.59 16 25 C -0.67 -3.99 10.71 101.05 1.08 -2.91 16 26 O -0.95 -11.45 18.08 -57.54 -1.04 -12.49 16 27 O -0.95 -9.92 15.05 -57.54 -0.87 -10.78 16 28 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.58 7.61 -51.93 -0.40 0.18 16 31 H 0.39 4.29 6.28 -40.82 -0.26 4.04 16 32 H 0.39 6.75 8.34 -40.82 -0.34 6.41 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.13 0.93 6.22 -52.48 -0.33 0.60 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.16 1.40 5.15 -52.48 -0.27 1.13 16 40 H 0.43 3.54 7.38 -34.47 -0.25 3.28 16 41 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 43 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -37.02 372.09 -9.63 -46.65 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.53 Total: 9.73 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.47 Total: -1.43 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.23 Total: -60.31 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.82 Total: -37.42 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 22.22 SS G_CDS: -0.63 Total: 21.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.02 -9.63 -46.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426437256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.441 kcal (2) G-P(sol) polarization free energy of solvation -37.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds