Wall clock time and date at job start Tue Mar 31 2020 22:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 N 1.46502 * 109.46944 * 240.00067 * 2 1 3 5 5 C 1.34776 * 120.00080 * 82.13290 * 4 2 1 6 6 O 1.21586 * 120.00012 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00087 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00036 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47212 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99527 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99890 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00629 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99765 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47251 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47038 * 119.99939 * 13 11 9 16 16 H 1.48499 * 109.47221 * 239.99405 * 13 11 9 17 17 C 1.50698 * 109.47050 * 120.00054 * 2 1 3 18 18 C 1.38122 * 120.03688 * 92.37718 * 17 2 1 19 19 C 1.38268 * 120.07392 * 180.27356 * 18 17 2 20 20 C 1.38308 * 120.14942 * 359.74103 * 19 18 17 21 21 C 1.38082 * 120.07187 * 359.97438 * 20 19 18 22 22 C 1.38886 * 120.03738 * 272.11773 * 17 2 1 23 23 N 1.39672 * 120.07603 * 359.97438 * 22 17 2 24 24 S 1.65597 * 120.00211 * 213.87766 * 23 22 17 25 25 C 1.81399 * 104.44985 * 59.97149 * 24 23 22 26 26 O 1.42100 * 104.27736 * 176.04443 * 24 23 22 27 27 O 1.42102 * 104.27744 * 303.89723 * 24 23 22 28 28 H 1.09003 * 109.47441 * 60.00040 * 1 2 3 29 29 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47034 * 300.00189 * 1 2 3 31 31 H 0.97001 * 119.99671 * 262.13246 * 4 2 1 32 32 H 0.97001 * 119.99664 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47294 * 300.00343 * 8 7 5 34 34 H 1.09004 * 109.46995 * 60.00028 * 8 7 5 35 35 H 0.97002 * 120.00577 * 180.02562 * 12 11 9 36 36 H 1.08007 * 119.96887 * 0.02562 * 18 17 2 37 37 H 1.08002 * 119.92717 * 179.71953 * 19 18 17 38 38 H 1.07996 * 119.96358 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.03422 * 180.02562 * 21 20 19 40 40 H 0.97003 * 119.99784 * 33.87741 * 23 22 17 41 41 H 1.08993 * 109.47197 * 60.00098 * 25 24 23 42 42 H 1.09008 * 109.47103 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47123 * 299.99647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.0923 -0.0336 -2.3707 6 8 1.7542 1.1324 -2.4373 7 7 2.5420 -0.6688 -3.4710 8 6 2.6229 0.0455 -4.7475 9 6 3.1522 -0.8829 -5.8100 10 1 3.4035 -1.9029 -5.5594 11 6 3.3165 -0.4299 -7.1017 12 7 3.0109 0.8124 -7.4069 13 14 3.9732 -1.5805 -8.4186 14 1 4.2393 -2.9144 -7.8227 15 1 2.9691 -1.7144 -9.5045 16 1 5.2338 -1.0273 -8.9756 17 6 2.0323 -0.7104 1.2304 18 6 2.3095 -2.0627 1.1833 19 6 2.7650 -2.7164 2.3133 20 6 2.9498 -2.0182 3.4928 21 6 2.6802 -0.6649 3.5452 22 6 2.2221 -0.0050 2.4117 23 7 1.9485 1.3637 2.4613 24 16 2.8627 2.3567 3.4207 25 6 4.5514 2.1715 2.7846 26 8 2.3673 3.6604 3.1483 27 8 2.7534 1.7879 4.7183 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2884 -1.6207 -1.1429 32 1 2.8120 -1.5989 -3.4177 33 1 1.6304 0.3946 -5.0321 34 1 3.2926 0.8994 -4.6442 35 1 3.1262 1.1310 -8.3158 36 1 2.1665 -2.6110 0.2638 37 1 2.9767 -3.7748 2.2749 38 1 3.3053 -2.5319 4.3737 39 1 2.8250 -0.1202 4.4665 40 1 1.2229 1.7327 1.9337 41 1 4.5810 2.4763 1.7386 42 1 5.2290 2.7975 3.3652 43 1 4.8588 1.1291 2.8682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426437256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:45 Heat of formation + Delta-G solvation = -99.915184 kcal Electronic energy + Delta-G solvation = -27534.765155 eV Core-core repulsion = 23513.131020 eV Total energy + Delta-G solvation = -4021.634135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46012 -40.40261 -38.36342 -37.22359 -36.81149 -36.13175 -35.92802 -34.38284 -32.35358 -30.74643 -30.39713 -29.69943 -28.93237 -25.29065 -24.52117 -23.67978 -22.14313 -21.46319 -20.60404 -20.02575 -18.80816 -18.68853 -18.06571 -17.66230 -17.36231 -16.72236 -16.59622 -16.40974 -16.26752 -15.84409 -15.31756 -15.05963 -14.90066 -14.81547 -14.35850 -14.19151 -14.14651 -14.05406 -14.00906 -13.60838 -13.40847 -13.32753 -13.21101 -13.13422 -12.86017 -12.75680 -12.69342 -12.35282 -12.20060 -11.99989 -11.92315 -11.53498 -11.42313 -11.21368 -10.79961 -10.33061 -9.82157 -9.60059 -9.21626 -8.26893 -6.42929 -0.90834 0.33554 0.38743 1.44839 1.46034 1.46354 1.59161 1.86765 2.26822 2.40610 2.62471 2.76165 3.08483 3.10935 3.52583 3.53632 3.77400 3.94664 4.02078 4.09247 4.13949 4.29306 4.33288 4.52364 4.64678 4.67953 4.85038 4.87630 4.92788 5.10125 5.12590 5.22145 5.29922 5.32700 5.42361 5.51416 5.63790 5.65396 5.71927 5.77089 5.87358 6.07915 6.26980 6.69424 7.26459 7.32673 7.74627 8.85557 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.002528 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.390668 B =11075.303994 C =11868.285761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.200 3.800 3 H 0.076 0.924 4 N -0.726 5.726 5 C 0.693 3.307 6 O -0.644 6.644 7 N -0.723 5.723 8 C 0.286 3.714 9 C -0.552 4.552 10 H 0.084 0.916 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.985 3.015 14 H -0.252 1.252 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.116 4.116 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.183 4.183 22 C 0.157 3.843 23 N -1.058 6.058 24 S 2.618 3.382 25 C -0.655 4.655 26 O -0.990 6.990 27 O -0.972 6.972 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.409 0.591 32 H 0.405 0.595 33 H -0.015 1.015 34 H -0.015 1.015 35 H 0.268 0.732 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.429 0.571 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -8.906 25.480 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.095 3.905 3 H 0.094 0.906 4 N -0.385 5.385 5 C 0.393 3.607 6 O -0.527 6.527 7 N -0.376 5.376 8 C 0.163 3.837 9 C -0.590 4.590 10 H 0.102 0.898 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.175 1.175 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.144 4.144 20 C -0.105 4.105 21 C -0.204 4.204 22 C 0.060 3.940 23 N -0.806 5.806 24 S 2.715 3.285 25 C -0.808 4.808 26 O -0.981 6.981 27 O -0.962 6.962 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.247 0.753 32 H 0.240 0.760 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.266 0.734 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.113 -7.157 26.096 27.142 hybrid contribution 0.282 -0.560 -1.740 1.850 sum 2.395 -7.717 24.355 25.661 Atomic orbital electron populations 1.22173 0.94100 1.03214 1.02101 1.19466 0.94237 0.95904 0.80915 0.90585 1.45069 1.71289 1.15627 1.06521 1.16278 0.78514 0.84635 0.81323 1.90846 1.58192 1.17839 1.85798 1.45285 1.68444 1.15650 1.08243 1.18394 0.94186 0.91792 0.79360 1.21631 1.44755 0.98650 0.93954 0.89756 1.26049 0.95262 0.96964 1.01351 1.70148 1.48441 1.17578 1.20823 0.85113 0.77585 0.78816 0.77688 1.17525 1.20603 1.20574 1.19653 1.04472 0.95416 0.92574 1.21041 0.97884 0.92461 0.99924 1.21483 0.99296 1.01518 0.92117 1.21389 0.97106 0.92843 0.99162 1.22033 1.04069 0.96913 0.97402 1.17267 1.00667 0.82480 0.93620 1.53426 1.47117 1.15561 1.64525 1.04662 0.78014 0.71967 0.73871 1.30333 1.21697 1.14026 1.14764 1.93602 1.79562 1.39358 1.85529 1.93517 1.86475 1.77618 1.38556 0.93948 0.90843 0.90239 0.75269 0.76022 0.99718 0.99659 0.92306 0.84264 0.82890 0.82772 0.82266 0.73384 0.84337 0.82468 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.39 71.98 0.68 -2.98 16 2 C 0.20 4.83 2.17 44.24 0.10 4.93 16 3 H 0.08 2.12 6.79 -2.39 -0.02 2.11 16 4 N -0.73 -19.64 5.04 -461.41 -2.33 -21.97 16 5 C 0.69 27.70 8.49 179.05 1.52 29.22 16 6 O -0.64 -32.13 15.95 -3.99 -0.06 -32.19 16 7 N -0.72 -30.09 5.55 -482.30 -2.68 -32.77 16 8 C 0.29 15.59 5.43 85.63 0.46 16.06 16 9 C -0.55 -29.55 9.28 25.60 0.24 -29.31 16 10 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 11 C 0.00 0.18 5.46 84.65 0.46 0.64 16 12 N -0.93 -55.83 13.29 21.44 0.28 -55.54 16 13 Si 0.98 41.71 29.54 68.60 2.03 43.74 16 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 17 C -0.12 -2.12 5.06 -19.74 -0.10 -2.22 16 18 C -0.09 -1.32 9.18 22.25 0.20 -1.12 16 19 C -0.13 -1.34 10.04 22.29 0.22 -1.12 16 20 C -0.09 -0.98 10.04 22.25 0.22 -0.75 16 21 C -0.18 -2.78 9.24 22.40 0.21 -2.57 16 22 C 0.16 2.71 6.12 38.21 0.23 2.95 16 23 N -1.06 -18.47 5.14 -51.37 -0.26 -18.73 16 24 S 2.62 44.61 5.85 -56.49 -0.33 44.28 16 25 C -0.65 -6.82 10.71 113.37 1.21 -5.61 16 26 O -0.99 -24.92 18.08 -127.65 -2.31 -27.23 16 27 O -0.97 -20.03 15.05 -127.65 -1.92 -21.95 16 28 H 0.04 1.25 8.04 -2.39 -0.02 1.23 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.51 7.61 -2.39 -0.02 1.49 16 31 H 0.41 8.12 6.28 -92.71 -0.58 7.54 16 32 H 0.40 13.64 8.34 -92.71 -0.77 12.87 16 33 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 34 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 35 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.14 1.54 6.22 -2.91 -0.02 1.52 16 37 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.16 2.52 5.15 -2.91 -0.01 2.51 16 40 H 0.43 7.43 7.38 -96.74 -0.71 6.71 16 41 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -83.28 372.09 -2.91 -86.19 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.99 Total: 28.04 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.66 Total: 8.13 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -4.98 Total: -129.01 kcal Atomic # 8 Polarization: -77.07 SS G_CDS: -4.29 Total: -81.36 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 44.61 SS G_CDS: -0.33 Total: 44.28 kcal Total: -83.28 -2.91 -86.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426437256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.724 kcal (2) G-P(sol) polarization free energy of solvation -83.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds