Wall clock time and date at job start Tue Mar 31 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38257 * 120.00261 * 269.73039 * 6 3 2 8 8 C 1.38214 * 120.00282 * 179.80962 * 7 6 3 9 9 C 1.38258 * 119.99869 * 0.39284 * 8 7 6 10 10 C 1.38212 * 119.99864 * 359.86136 * 9 8 7 11 11 C 1.50699 * 120.00120 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47524 * 199.97481 * 11 10 9 13 13 C 1.53001 * 109.47142 * 79.97440 * 11 10 9 14 14 N 1.46503 * 109.46884 * 319.97649 * 11 10 9 15 15 C 1.34773 * 119.99677 * 205.00094 * 14 11 10 16 16 O 1.21589 * 120.00409 * 359.97438 * 15 14 11 17 17 N 1.34781 * 119.99709 * 180.02562 * 15 14 11 18 18 C 1.46500 * 119.99899 * 179.97438 * 17 15 14 19 19 C 1.50702 * 109.47254 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99562 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00401 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47135 * 90.00413 * 23 21 19 25 25 H 1.48507 * 109.46882 * 210.00095 * 23 21 19 26 26 H 1.48500 * 109.47018 * 329.99709 * 23 21 19 27 27 C 1.38213 * 120.00144 * 89.99671 * 6 3 2 28 28 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 29 29 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 30 30 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 31 31 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 32 32 H 1.08000 * 119.99786 * 359.97438 * 7 6 3 33 33 H 1.08000 * 120.00029 * 180.22925 * 8 7 6 34 34 H 1.08000 * 119.99955 * 179.83769 * 9 8 7 35 35 H 1.09005 * 109.47229 * 299.99957 * 13 11 10 36 36 H 1.08997 * 109.47243 * 60.00605 * 13 11 10 37 37 H 1.09005 * 109.46795 * 180.02562 * 13 11 10 38 38 H 0.97001 * 119.99981 * 25.00179 * 14 11 10 39 39 H 0.97000 * 120.00040 * 359.97438 * 17 15 14 40 40 H 1.08990 * 109.47098 * 299.99799 * 18 17 15 41 41 H 1.09009 * 109.47261 * 59.99901 * 18 17 15 42 42 H 0.97005 * 120.00388 * 179.97438 * 22 21 19 43 43 H 1.08005 * 119.99509 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8552 3.1091 1.6062 8 6 0.5693 3.7423 2.8010 9 6 1.3642 3.5181 3.9097 10 6 2.4432 2.6586 3.8240 11 6 3.3101 2.4146 5.0323 12 1 4.2752 2.0207 4.7136 13 6 2.6262 1.4037 5.9550 14 7 3.5106 3.6749 5.7519 15 6 4.5995 3.8416 6.5283 16 8 5.4153 2.9460 6.6319 17 7 4.7837 5.0009 7.1908 18 6 5.9671 5.1819 8.0352 19 6 5.9348 6.5539 8.6578 20 1 5.1146 7.2238 8.4460 21 6 6.9518 6.9535 9.4985 22 7 7.9503 6.1377 9.7568 23 14 6.9113 8.6540 10.2709 24 1 6.1970 8.5902 11.5712 25 1 8.3004 9.1304 10.4920 26 1 6.2046 9.5932 9.3632 27 6 2.7269 2.0221 2.6299 28 1 -0.3634 0.5181 0.8876 29 1 -0.3634 0.5095 -0.8924 30 1 -0.3634 -1.0276 0.0050 31 1 1.9500 -0.8401 0.0041 32 1 0.2364 3.2870 0.7391 33 1 -0.2736 4.4142 2.8678 34 1 1.1423 4.0149 4.8427 35 1 1.6611 1.7977 6.2738 36 1 2.4770 0.4661 5.4196 37 1 3.2530 1.2276 6.8292 38 1 2.8596 4.3893 5.6696 39 1 4.1327 5.7152 7.1084 40 1 5.9721 4.4262 8.8205 41 1 6.8662 5.0802 7.4273 42 1 8.6661 6.4189 10.3481 43 1 3.5699 1.3503 2.5629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:14 Heat of formation + Delta-G solvation = -80.446316 kcal Electronic energy + Delta-G solvation = -26816.581727 eV Core-core repulsion = 22795.791825 eV Total energy + Delta-G solvation = -4020.789902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23812 -38.97017 -37.59117 -36.20020 -35.66076 -35.44009 -34.06400 -32.47455 -31.70794 -31.40376 -29.38342 -26.98950 -26.48444 -24.32270 -23.75111 -22.63058 -21.38900 -20.19318 -19.73463 -18.53478 -18.05007 -17.79743 -16.73952 -16.43847 -16.18093 -16.02601 -15.33835 -15.00934 -14.81455 -14.68054 -14.47875 -14.29061 -14.00581 -13.69657 -13.51200 -13.32281 -13.05594 -12.76377 -12.67550 -12.46115 -12.41256 -12.26141 -12.06058 -11.97024 -11.92751 -11.71091 -11.15244 -11.06045 -10.95446 -10.88364 -10.30728 -10.12738 -9.77114 -9.47163 -9.37736 -9.26045 -8.85236 -8.71005 -7.79269 -6.15558 -4.22247 -0.01149 0.43590 0.86965 2.58154 3.05418 3.24358 3.26833 3.31444 3.34573 3.44945 3.89090 3.95537 4.30208 4.32475 4.43744 4.51801 4.59009 4.76059 4.91846 4.97783 5.04841 5.09783 5.20508 5.22195 5.25356 5.28747 5.38199 5.47630 5.59839 5.68664 5.79392 5.85666 6.08573 6.19416 6.41985 6.43268 6.79025 7.07871 7.49398 7.53334 7.56683 7.88351 8.02811 8.75234 8.91404 9.30705 9.46801 10.94633 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.002038 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.847197 B =13736.582260 C =13819.894370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.121 6.121 3 S 2.698 3.302 4 O -0.954 6.954 5 O -0.956 6.956 6 C -0.675 4.675 7 C -0.026 4.026 8 C -0.135 4.135 9 C -0.055 4.055 10 C -0.103 4.103 11 C 0.200 3.800 12 H 0.100 0.900 13 C -0.158 4.158 14 N -0.753 5.753 15 C 0.694 3.306 16 O -0.598 6.598 17 N -0.729 5.729 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.007 4.007 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.420 0.580 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.389 0.611 39 H 0.386 0.614 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.449 -11.762 -18.643 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.786 3.214 4 O -0.945 6.945 5 O -0.946 6.946 6 C -0.762 4.762 7 C -0.046 4.046 8 C -0.154 4.154 9 C -0.074 4.074 10 C -0.104 4.104 11 C 0.094 3.906 12 H 0.118 0.882 13 C -0.217 4.217 14 N -0.411 5.411 15 C 0.394 3.606 16 O -0.477 6.477 17 N -0.381 5.381 18 C 0.146 3.854 19 C -0.581 4.581 20 H 0.080 0.920 21 C -0.141 4.141 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.027 4.027 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.254 0.746 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.223 0.777 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.038 -12.119 -19.061 30.195 hybrid contribution -0.755 1.387 1.218 1.994 sum -20.793 -10.731 -17.843 29.426 Atomic orbital electron populations 1.21506 0.78418 1.04369 1.02060 1.55333 1.16239 1.24458 1.92046 1.01846 0.72920 0.72731 0.73901 1.93625 1.30509 1.83254 1.87066 1.93590 1.78919 1.68548 1.53556 1.30840 1.07645 1.16382 1.21326 1.20933 0.93490 0.91892 0.98241 1.21283 1.00570 1.00746 0.92803 1.21340 0.92668 0.94542 0.98836 1.20213 0.96816 0.98101 0.95278 1.19539 0.98204 0.84896 0.87952 0.88219 1.22206 1.00800 0.98209 1.00455 1.45305 1.26036 1.17464 1.52326 1.16123 0.81367 0.83962 0.79127 1.90877 1.45617 1.42526 1.68632 1.45731 1.28293 1.14143 1.49887 1.18988 0.81331 0.96501 0.88579 1.21216 1.08221 0.99555 1.29076 0.91986 1.24945 0.95038 0.97879 0.96189 1.69974 1.10437 1.35879 1.35928 0.86410 0.77430 0.83503 0.79503 1.20498 1.20999 1.19804 1.20790 0.96034 0.95643 0.90222 0.92109 0.91271 0.89811 0.74584 0.84230 0.84748 0.85021 0.92560 0.91872 0.90896 0.77673 0.78213 0.95708 0.95702 0.92446 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.13 59.85 0.67 0.95 16 2 N -1.12 -5.90 6.19 -16.63 -0.10 -6.00 16 3 S 2.70 24.13 5.74 -107.50 -0.62 23.52 16 4 O -0.95 -11.66 17.28 -57.17 -0.99 -12.65 16 5 O -0.96 -10.86 17.02 -57.17 -0.97 -11.84 16 6 C -0.67 -6.10 5.94 -39.58 -0.24 -6.34 16 7 C -0.03 -0.21 9.52 -39.58 -0.38 -0.58 16 8 C -0.14 -1.00 10.05 -39.58 -0.40 -1.40 16 9 C -0.06 -0.47 9.05 -39.58 -0.36 -0.83 16 10 C -0.10 -1.06 4.95 -104.62 -0.52 -1.58 16 11 C 0.20 2.54 2.78 -69.08 -0.19 2.35 16 12 H 0.10 1.47 7.44 -51.93 -0.39 1.08 16 13 C -0.16 -1.80 9.46 37.16 0.35 -1.44 16 14 N -0.75 -10.92 5.03 -59.81 -0.30 -11.22 16 15 C 0.69 14.10 8.53 -86.92 -0.74 13.36 16 16 O -0.60 -14.67 16.01 5.29 0.08 -14.58 16 17 N -0.73 -15.49 5.55 -66.41 -0.37 -15.86 16 18 C 0.27 7.15 5.43 -5.19 -0.03 7.12 16 19 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.76 5.46 -17.83 -0.10 1.66 16 22 N -0.88 -26.18 13.29 55.43 0.74 -25.45 16 23 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 C -0.01 -0.07 9.15 -39.58 -0.36 -0.43 16 28 H 0.06 0.17 8.14 -51.92 -0.42 -0.26 16 29 H 0.07 0.24 8.11 -51.93 -0.42 -0.18 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.42 1.47 8.96 -34.47 -0.31 1.16 16 32 H 0.14 0.85 7.61 -52.49 -0.40 0.45 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.91 6.92 -52.49 -0.36 0.54 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.39 4.47 6.89 -40.82 -0.28 4.19 16 39 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.14 1.36 7.60 -52.48 -0.40 0.96 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -38.06 380.51 -10.24 -48.30 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.81 Total: 6.41 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.61 Total: -2.24 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.04 Total: -58.53 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.88 Total: -39.07 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 24.13 SS G_CDS: -0.62 Total: 23.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.06 -10.24 -48.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -38.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds