Wall clock time and date at job start Tue Mar 31 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38257 * 120.00261 * 269.73039 * 6 3 2 8 8 C 1.38216 * 120.00298 * 179.74025 * 7 6 3 9 9 C 1.38251 * 119.99681 * 0.55467 * 8 7 6 10 10 C 1.38221 * 120.00336 * 359.69652 * 9 8 7 11 11 C 1.50696 * 120.00241 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47032 * 160.02479 * 11 10 9 13 13 C 1.53003 * 109.46850 * 280.02173 * 11 10 9 14 14 N 1.46496 * 109.47364 * 40.02196 * 11 10 9 15 15 C 1.34774 * 120.00261 * 155.00341 * 14 11 10 16 16 O 1.21591 * 119.99604 * 359.97438 * 15 14 11 17 17 N 1.34777 * 120.00207 * 180.02562 * 15 14 11 18 18 C 1.46500 * 119.99793 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.46869 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99745 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47097 * 89.99873 * 23 21 19 25 25 H 1.48498 * 109.47096 * 209.99597 * 23 21 19 26 26 H 1.48497 * 109.47235 * 330.00216 * 23 21 19 27 27 C 1.38213 * 120.00144 * 89.99671 * 6 3 2 28 28 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 29 29 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 30 30 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 31 31 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 32 32 H 1.08000 * 119.99786 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.00153 * 180.27199 * 8 7 6 34 34 H 1.07997 * 120.00225 * 179.72231 * 9 8 7 35 35 H 1.08998 * 109.46860 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.46819 * 299.99824 * 13 11 10 37 37 H 1.09000 * 109.47544 * 59.99731 * 13 11 10 38 38 H 0.96998 * 120.00024 * 334.99681 * 14 11 10 39 39 H 0.96998 * 119.99526 * 359.97438 * 17 15 14 40 40 H 1.08994 * 109.47045 * 300.00014 * 18 17 15 41 41 H 1.08998 * 109.47034 * 59.99978 * 18 17 15 42 42 H 0.97003 * 120.00039 * 179.97438 * 22 21 19 43 43 H 1.08007 * 119.99465 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8552 3.1091 1.6062 8 6 0.5684 3.7412 2.8014 9 6 1.3645 3.5185 3.9095 10 6 2.4435 2.6589 3.8239 11 6 3.3109 2.4157 5.0320 12 1 3.8635 1.4853 4.9011 13 6 4.2957 3.5753 5.1944 14 7 2.4685 2.3195 6.2267 15 6 2.9006 1.6320 7.3024 16 8 3.9894 1.0912 7.2810 17 7 2.1253 1.5431 8.4013 18 6 2.5949 0.7953 9.5703 19 6 1.5495 0.8499 10.6545 20 1 0.6275 1.3874 10.4891 21 6 1.7703 0.2135 11.8576 22 7 2.8928 -0.4414 12.0588 23 14 0.4749 0.2818 13.2017 24 1 -0.4568 -0.8646 13.0499 25 1 1.1354 0.2103 14.5298 26 1 -0.2838 1.5538 13.0939 27 6 2.7269 2.0221 2.6299 28 1 -0.3634 0.5095 -0.8924 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3634 0.5181 0.8876 31 1 1.9500 -0.8401 0.0041 32 1 0.2364 3.2870 0.7391 33 1 -0.2748 4.4126 2.8684 34 1 1.1431 4.0158 4.8423 35 1 4.9234 3.3991 6.0679 36 1 4.9225 3.6468 4.3055 37 1 3.7432 4.5057 5.3252 38 1 1.5998 2.7506 6.2436 39 1 1.2566 1.9742 8.4180 40 1 2.7741 -0.2426 9.2897 41 1 3.5212 1.2378 9.9366 42 1 3.0483 -0.8888 12.9053 43 1 3.5704 1.3509 2.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:16 Heat of formation + Delta-G solvation = -80.919699 kcal Electronic energy + Delta-G solvation = -26865.211798 eV Core-core repulsion = 22844.401369 eV Total energy + Delta-G solvation = -4020.810429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24155 -38.98278 -37.59280 -36.20643 -35.66313 -35.40531 -34.08327 -32.49203 -31.70908 -31.41046 -29.37238 -27.00555 -26.44174 -24.31899 -23.75228 -22.64491 -21.39202 -20.20260 -19.71934 -18.54468 -18.05655 -17.79788 -16.72054 -16.43670 -16.17939 -16.03494 -15.34973 -15.00330 -14.82004 -14.69437 -14.48648 -14.22491 -14.01356 -13.71597 -13.54359 -13.26888 -13.06520 -12.74948 -12.68468 -12.46245 -12.41542 -12.24606 -12.03677 -11.99002 -11.91214 -11.71325 -11.16647 -11.06152 -10.96296 -10.90715 -10.32694 -10.09057 -9.76994 -9.48510 -9.39840 -9.26563 -8.86311 -8.72890 -7.81338 -6.17673 -4.24385 -0.00140 0.43630 0.87111 2.59355 3.02716 3.22540 3.26986 3.30133 3.34941 3.42614 3.87559 3.95468 4.30523 4.30718 4.43739 4.56373 4.58946 4.76207 4.95975 4.99115 5.04248 5.09779 5.18470 5.27529 5.28823 5.30425 5.39525 5.48143 5.60955 5.71434 5.80592 5.86082 6.08773 6.22030 6.42405 6.46240 6.77956 7.06041 7.47298 7.51336 7.54464 7.86440 8.00791 8.73163 8.89463 9.28795 9.44776 10.92557 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002129 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.594483 B =13149.393426 C =13387.479147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.120 6.120 3 S 2.698 3.302 4 O -0.956 6.956 5 O -0.957 6.957 6 C -0.675 4.675 7 C -0.026 4.026 8 C -0.135 4.135 9 C -0.055 4.055 10 C -0.102 4.102 11 C 0.201 3.799 12 H 0.100 0.900 13 C -0.160 4.160 14 N -0.753 5.753 15 C 0.694 3.306 16 O -0.598 6.598 17 N -0.729 5.729 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.007 4.007 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.420 0.580 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.389 0.611 39 H 0.386 0.614 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 6.333 -24.984 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.880 5.880 3 S 2.787 3.213 4 O -0.946 6.946 5 O -0.947 6.947 6 C -0.762 4.762 7 C -0.046 4.046 8 C -0.154 4.154 9 C -0.074 4.074 10 C -0.104 4.104 11 C 0.095 3.905 12 H 0.117 0.883 13 C -0.218 4.218 14 N -0.411 5.411 15 C 0.394 3.606 16 O -0.476 6.476 17 N -0.381 5.381 18 C 0.146 3.854 19 C -0.581 4.581 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.027 4.027 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.255 0.745 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.223 0.777 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.998 6.149 -25.457 26.867 hybrid contribution -1.688 0.169 1.648 2.365 sum -7.686 6.318 -23.809 25.804 Atomic orbital electron populations 1.21516 0.78337 1.04508 1.02033 1.55304 1.16305 1.24428 1.91984 1.01802 0.72906 0.72727 0.73884 1.93615 1.30608 1.83289 1.87110 1.93588 1.78931 1.68608 1.53577 1.30844 1.07677 1.16318 1.21387 1.20933 0.93433 0.91917 0.98279 1.21280 1.00483 1.00841 0.92790 1.21339 0.92861 0.94421 0.98776 1.20214 0.96958 0.97755 0.95464 1.19532 0.89769 1.00559 0.80661 0.88253 1.22217 0.99203 0.97423 1.02989 1.45310 1.21859 1.59270 1.14681 1.16127 0.84645 0.79573 0.80259 1.90880 1.21705 1.52370 1.82693 1.45730 1.20315 1.57028 1.14989 1.18986 0.95389 0.91136 0.79879 1.21214 1.03260 1.34690 0.98919 0.91996 1.24945 0.95810 0.94862 0.98424 1.69974 1.24052 1.33034 1.25162 0.86410 0.81118 0.78458 0.80863 1.20486 1.20993 1.19807 1.20791 0.96220 0.95186 0.90498 0.91267 0.89723 0.92066 0.74523 0.84230 0.84749 0.85024 0.90885 0.91708 0.92536 0.77695 0.78228 0.95732 0.95704 0.92435 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.13 59.85 0.67 1.03 16 2 N -1.12 -6.74 6.19 -16.63 -0.10 -6.84 16 3 S 2.70 24.21 5.74 -107.50 -0.62 23.59 16 4 O -0.96 -11.39 17.28 -57.17 -0.99 -12.38 16 5 O -0.96 -10.69 17.02 -57.17 -0.97 -11.67 16 6 C -0.68 -6.12 5.94 -39.58 -0.24 -6.35 16 7 C -0.03 -0.21 9.52 -39.58 -0.38 -0.58 16 8 C -0.14 -1.00 10.05 -39.58 -0.40 -1.40 16 9 C -0.06 -0.47 9.06 -39.58 -0.36 -0.83 16 10 C -0.10 -1.06 4.95 -104.62 -0.52 -1.58 16 11 C 0.20 2.55 2.78 -69.08 -0.19 2.36 16 12 H 0.10 1.44 7.44 -51.93 -0.39 1.05 16 13 C -0.16 -1.91 9.46 37.16 0.35 -1.56 16 14 N -0.75 -10.67 5.03 -59.82 -0.30 -10.97 16 15 C 0.69 13.84 8.53 -86.92 -0.74 13.10 16 16 O -0.60 -14.48 16.01 5.29 0.08 -14.40 16 17 N -0.73 -15.20 5.55 -66.41 -0.37 -15.57 16 18 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16 19 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 20 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -25.95 13.29 55.43 0.74 -25.21 16 23 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.01 -0.07 9.15 -39.58 -0.36 -0.43 16 28 H 0.07 0.29 8.11 -51.93 -0.42 -0.13 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.92 -0.42 -0.19 16 31 H 0.42 1.86 8.96 -34.47 -0.31 1.55 16 32 H 0.14 0.85 7.61 -52.49 -0.40 0.45 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.91 6.92 -52.49 -0.36 0.54 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.39 4.33 6.89 -40.82 -0.28 4.05 16 39 H 0.39 6.81 8.34 -40.82 -0.34 6.47 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 1.36 7.60 -52.48 -0.40 0.97 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -37.35 380.50 -10.24 -47.59 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.81 Total: 6.96 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.61 Total: -2.47 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.04 Total: -58.59 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.88 Total: -38.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 24.21 SS G_CDS: -0.62 Total: 23.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.35 -10.24 -47.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.329 kcal (2) G-P(sol) polarization free energy of solvation -37.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds