Wall clock time and date at job start Tue Mar 31 2020 22:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47773 * 2 1 4 4 C 1.50704 * 109.47196 * 119.99431 * 2 1 3 5 5 C 1.38260 * 119.99705 * 88.11834 * 4 2 1 6 6 C 1.38223 * 119.99708 * 179.76662 * 5 4 2 7 7 C 1.38256 * 119.99832 * 0.48758 * 6 5 4 8 8 C 1.38217 * 119.99944 * 359.79355 * 7 6 5 9 9 S 1.76205 * 119.99715 * 179.97438 * 8 7 6 10 10 N 1.65602 * 107.21661 * 269.97247 * 9 8 7 11 11 O 1.42099 * 106.40293 * 23.51495 * 9 8 7 12 12 O 1.42096 * 106.40032 * 156.43501 * 9 8 7 13 13 C 1.38206 * 120.00290 * 268.39745 * 4 2 1 14 14 N 1.46500 * 109.47412 * 239.99239 * 2 1 3 15 15 C 1.46491 * 119.99943 * 318.17348 * 14 2 1 16 16 C 1.34781 * 120.00076 * 138.16656 * 14 2 1 17 17 O 1.21584 * 119.99880 * 0.02562 * 16 14 2 18 18 N 1.34767 * 120.00082 * 180.02562 * 16 14 2 19 19 C 1.46497 * 120.00141 * 180.02562 * 18 16 14 20 20 C 1.50704 * 109.47543 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99463 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00444 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99804 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00205 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47176 * 60.00057 * 24 22 20 26 26 H 1.48502 * 109.47462 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47348 * 300.00320 * 24 22 20 28 28 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46939 * 300.00229 * 1 2 3 30 30 H 1.08999 * 109.47004 * 60.00471 * 1 2 3 31 31 H 1.07993 * 120.00467 * 0.02562 * 5 4 2 32 32 H 1.07991 * 119.99991 * 180.25437 * 6 5 4 33 33 H 1.07997 * 119.99654 * 179.76825 * 7 6 5 34 34 H 0.97001 * 119.99632 * 0.02562 * 10 9 8 35 35 H 0.96998 * 119.99776 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.99936 * 359.97438 * 13 4 2 37 37 H 1.08995 * 109.47634 * 96.17953 * 15 14 2 38 38 H 1.09005 * 109.47523 * 216.17969 * 15 14 2 39 39 H 1.09000 * 109.47711 * 336.17435 * 15 14 2 40 40 H 0.97005 * 120.00346 * 359.97438 * 18 16 14 41 41 H 1.09004 * 109.47415 * 299.99621 * 19 18 16 42 42 H 1.08998 * 109.47715 * 59.99893 * 19 18 16 43 43 H 0.97001 * 119.99894 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.2257 -2.0791 1.2081 6 6 2.6910 -2.7299 2.3352 7 6 2.9535 -2.0135 3.4882 8 6 2.7547 -0.6459 3.5124 9 16 3.0886 0.2670 4.9820 10 7 1.6905 0.2963 5.8691 11 8 4.0216 -0.5019 5.7287 12 8 3.3339 1.6062 4.5754 13 6 2.2942 0.0057 2.3833 14 7 2.0183 -0.6908 -1.1961 15 6 1.3713 -1.9264 -1.6438 16 6 3.0630 -0.1894 -1.8845 17 8 3.6002 0.8360 -1.5127 18 7 3.5119 -0.8245 -2.9851 19 6 4.6477 -0.2798 -3.7331 20 6 4.9474 -1.1709 -4.9109 21 1 4.3516 -2.0549 -5.0846 22 6 5.9820 -0.8578 -5.7667 23 7 6.7078 0.2183 -5.5549 24 14 6.3539 -1.9627 -7.2262 25 1 5.1638 -2.0302 -8.1118 26 1 7.5051 -1.4105 -7.9845 27 1 6.6887 -3.3262 -6.7423 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0171 -2.6393 0.3086 32 1 2.8460 -3.7985 2.3164 33 1 3.3135 -2.5226 4.3700 34 1 0.8948 -0.1464 5.5349 35 1 1.6674 0.7563 6.7228 36 1 2.1393 1.0744 2.4021 37 1 0.6392 -1.6936 -2.4171 38 1 2.1230 -2.6046 -2.0477 39 1 0.8701 -2.4006 -0.8000 40 1 3.0835 -1.6428 -3.2816 41 1 4.4024 0.7210 -4.0884 42 1 5.5211 -0.2306 -3.0829 43 1 7.4359 0.4384 -6.1567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426452524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:35 Heat of formation + Delta-G solvation = -66.858549 kcal Electronic energy + Delta-G solvation = -27482.174545 eV Core-core repulsion = 23461.973853 eV Total energy + Delta-G solvation = -4020.200692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40714 -39.00171 -37.35059 -36.10168 -36.00841 -34.26020 -33.52009 -32.83339 -31.83742 -31.46930 -29.59836 -27.30786 -26.86576 -23.92993 -23.58193 -22.64586 -21.27193 -19.82170 -19.33570 -18.36060 -17.97048 -17.60988 -17.03812 -16.33699 -16.08513 -15.93778 -15.61275 -15.48777 -14.92360 -14.57357 -14.45733 -13.99374 -13.65182 -13.53239 -13.21520 -13.14399 -12.73828 -12.54233 -12.40079 -12.38629 -12.28337 -12.14242 -12.01919 -11.82776 -11.81407 -11.68664 -11.12648 -10.97880 -10.93074 -10.86113 -10.82809 -10.30255 -9.64856 -9.42176 -9.38736 -9.08855 -8.74007 -8.54539 -7.79283 -6.15578 -4.22663 0.12276 0.55346 1.01880 2.80967 3.02940 3.20219 3.24787 3.30023 3.31564 3.50760 3.81934 4.19811 4.30442 4.50839 4.63274 4.72280 4.72598 4.89965 4.97209 5.05488 5.09636 5.20105 5.20335 5.35036 5.38849 5.52428 5.62594 5.63271 5.65509 5.75315 5.80068 5.93653 6.01821 6.20125 6.56120 6.65399 6.66073 7.06900 7.48152 7.50227 7.56323 7.81756 8.00615 8.73022 8.86910 9.28109 9.45768 10.94607 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002471 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.904894 B =11329.299662 C =11773.847912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.193 3.807 3 H 0.112 0.888 4 C -0.105 4.105 5 C -0.056 4.056 6 C -0.139 4.139 7 C -0.025 4.025 8 C -0.674 4.674 9 S 2.701 3.299 10 N -1.251 6.251 11 O -0.965 6.965 12 O -0.960 6.960 13 C -0.009 4.009 14 N -0.637 5.637 15 C 0.072 3.928 16 C 0.695 3.305 17 O -0.593 6.593 18 N -0.726 5.726 19 C 0.266 3.734 20 C -0.543 4.543 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.416 0.584 35 H 0.419 0.581 36 H 0.144 0.856 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.386 0.614 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.722 -6.389 20.438 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.088 3.912 3 H 0.130 0.870 4 C -0.108 4.108 5 C -0.074 4.074 6 C -0.158 4.158 7 C -0.044 4.044 8 C -0.762 4.762 9 S 2.791 3.209 10 N -0.925 5.925 11 O -0.954 6.954 12 O -0.949 6.949 13 C -0.029 4.029 14 N -0.376 5.376 15 C -0.071 4.071 16 C 0.396 3.604 17 O -0.472 6.472 18 N -0.379 5.379 19 C 0.145 3.855 20 C -0.581 4.581 21 H 0.079 0.921 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.243 0.757 35 H 0.249 0.751 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.220 0.780 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.111 -5.104 20.695 26.719 hybrid contribution -0.618 -1.521 -1.316 2.104 sum -16.729 -6.625 19.379 26.444 Atomic orbital electron populations 1.22135 0.93505 1.02610 1.03010 1.19698 0.93698 0.97289 0.80524 0.87009 1.20547 1.00102 0.94368 0.95749 1.21736 0.93080 0.94329 0.98244 1.21311 1.00763 1.00575 0.93156 1.20932 0.92750 0.91708 0.99044 1.30426 1.19360 1.07148 1.19236 1.01539 0.72435 0.73805 0.73147 1.53090 1.30598 1.72647 1.36213 1.93599 1.59632 1.71955 1.70262 1.93626 1.83313 1.35559 1.82412 1.20795 0.91241 1.00070 0.90801 1.47096 1.34790 1.27113 1.28643 1.21831 0.98322 0.86889 1.00084 1.16091 0.79813 0.83641 0.80855 1.90881 1.60115 1.25430 1.70750 1.45836 1.36781 1.28348 1.26918 1.18993 0.82166 0.94593 0.89726 1.21158 1.16490 1.10073 1.10421 0.92101 1.24941 0.95610 0.95395 0.98047 1.69967 1.19597 1.24767 1.37823 0.86472 0.77940 0.80472 0.81965 1.20094 1.21053 1.20118 0.92064 0.91199 0.91224 0.84389 0.84905 0.84183 0.75728 0.75080 0.83859 0.92531 0.91262 0.90786 0.77999 0.95695 0.95747 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 37.15 0.33 -1.01 16 2 C 0.19 2.44 2.80 -69.08 -0.19 2.25 16 3 H 0.11 1.69 7.04 -51.93 -0.37 1.32 16 4 C -0.11 -1.26 5.01 -104.62 -0.52 -1.78 16 5 C -0.06 -0.60 8.98 -39.58 -0.36 -0.95 16 6 C -0.14 -1.33 10.05 -39.58 -0.40 -1.72 16 7 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 8 C -0.67 -7.00 5.94 -39.58 -0.24 -7.23 16 9 S 2.70 26.38 6.28 -107.50 -0.68 25.71 16 10 N -1.25 -6.16 9.55 60.35 0.58 -5.59 16 11 O -0.97 -12.27 17.28 -57.17 -0.99 -13.26 16 12 O -0.96 -13.01 17.28 -57.17 -0.99 -14.00 16 13 C -0.01 -0.11 9.17 -39.59 -0.36 -0.47 16 14 N -0.64 -9.30 2.49 -181.02 -0.45 -9.75 16 15 C 0.07 0.74 7.62 59.84 0.46 1.19 16 16 C 0.69 14.35 8.28 -86.92 -0.72 13.63 16 17 O -0.59 -14.92 15.76 5.29 0.08 -14.83 16 18 N -0.73 -15.55 5.41 -66.42 -0.36 -15.90 16 19 C 0.27 7.17 5.43 -5.19 -0.03 7.14 16 20 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 21 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.88 -26.26 13.29 55.43 0.74 -25.52 16 24 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.06 0.44 6.76 -51.93 -0.35 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.14 1.29 4.45 -52.49 -0.23 1.06 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.11 7.62 -52.49 -0.40 0.71 16 34 H 0.42 1.02 8.92 -34.47 -0.31 0.71 16 35 H 0.42 1.38 8.96 -34.47 -0.31 1.07 16 36 H 0.14 1.52 7.62 -52.48 -0.40 1.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.71 6.71 -51.93 -0.35 0.37 16 39 H 0.07 0.54 5.00 -51.93 -0.26 0.28 16 40 H 0.39 7.03 6.19 -40.82 -0.25 6.78 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -39.58 368.53 -9.66 -49.23 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.30 Total: 5.51 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.83 Total: -2.98 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.50 Total: -56.76 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.89 Total: -42.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 26.38 SS G_CDS: -0.68 Total: 25.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.58 -9.66 -49.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.626 kcal (2) G-P(sol) polarization free energy of solvation -39.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds