Wall clock time and date at job start Tue Mar 31 2020 22:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47438 * 2 1 4 4 C 1.50705 * 109.47100 * 240.00584 * 2 1 3 5 5 C 1.38262 * 119.99862 * 295.42929 * 4 2 1 6 6 C 1.38214 * 119.99559 * 179.97438 * 5 4 2 7 7 C 1.38246 * 120.00583 * 359.97438 * 6 5 4 8 8 C 1.38222 * 120.00146 * 359.81099 * 7 6 5 9 9 S 1.76196 * 120.00450 * 180.23431 * 8 7 6 10 10 N 1.65597 * 107.21679 * 270.19269 * 9 8 7 11 11 O 1.42102 * 106.40016 * 23.73123 * 9 8 7 12 12 O 1.42098 * 106.40052 * 156.65018 * 9 8 7 13 13 C 1.38211 * 119.99990 * 115.45098 * 4 2 1 14 14 N 1.46500 * 109.47394 * 120.00807 * 2 1 3 15 15 C 1.46500 * 119.99984 * 53.81919 * 14 2 1 16 16 C 1.34776 * 119.99950 * 233.82909 * 14 2 1 17 17 O 1.21584 * 120.00147 * 359.97438 * 16 14 2 18 18 N 1.34775 * 120.00001 * 179.97438 * 16 14 2 19 19 C 1.46499 * 120.00193 * 179.97438 * 18 16 14 20 20 C 1.50697 * 109.47086 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00401 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99565 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00465 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99814 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46670 * 60.00136 * 24 22 20 26 26 H 1.48498 * 109.47333 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47088 * 300.00578 * 24 22 20 28 28 H 1.09002 * 109.46642 * 299.99768 * 1 2 3 29 29 H 1.09007 * 109.46889 * 59.99558 * 1 2 3 30 30 H 1.08996 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99908 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.99241 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.00283 * 180.02562 * 7 6 5 34 34 H 0.97002 * 119.99615 * 150.00294 * 10 9 8 35 35 H 0.97001 * 119.99994 * 329.99655 * 10 9 8 36 36 H 1.07996 * 120.00378 * 359.97438 * 13 4 2 37 37 H 1.08999 * 109.46904 * 89.07810 * 15 14 2 38 38 H 1.08998 * 109.47030 * 209.07561 * 15 14 2 39 39 H 1.08993 * 109.47218 * 329.08075 * 15 14 2 40 40 H 0.96999 * 120.00046 * 0.02562 * 18 16 14 41 41 H 1.09005 * 109.47285 * 300.00297 * 19 18 16 42 42 H 1.09000 * 109.47201 * 59.99951 * 19 18 16 43 43 H 0.96997 * 120.00537 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.7780 -2.0584 -1.4029 6 6 2.2383 -2.7096 -2.5317 7 6 2.9525 -2.0131 -3.4888 8 6 3.2029 -0.6645 -3.3188 9 16 4.1079 0.2247 -4.5415 10 7 5.7102 0.1225 -4.1362 11 8 3.9546 -0.4956 -5.7568 12 8 3.7435 1.5904 -4.3962 13 6 2.7476 -0.0143 -2.1867 14 7 2.0184 -0.6908 1.1960 15 6 1.5565 -2.0478 1.4981 16 6 2.8925 -0.0777 2.0186 17 8 3.2761 1.0484 1.7677 18 7 3.3414 -0.7130 3.1192 19 6 4.2920 -0.0469 4.0130 20 6 4.6326 -0.9650 5.1584 21 1 4.1854 -1.9464 5.2152 22 6 5.5144 -0.5517 6.1344 23 7 6.0579 0.6439 6.0661 24 14 5.9361 -1.6895 7.5547 25 1 6.5449 -2.9365 7.0258 26 1 6.8998 -1.0144 8.4606 27 1 4.6994 -2.0226 8.3061 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.2197 -2.6024 -0.6554 32 1 2.0392 -3.7625 -2.6665 33 1 3.3118 -2.5220 -4.3711 34 1 6.3880 0.1403 -4.8300 35 1 5.9710 0.0449 -3.2052 36 1 2.9463 1.0387 -2.0521 37 1 2.2145 -2.7712 1.0166 38 1 1.5711 -2.2049 2.5766 39 1 0.5403 -2.1770 1.1259 40 1 3.0357 -1.6116 3.3191 41 1 5.1998 0.1973 3.4611 42 1 3.8455 0.8686 4.4011 43 1 6.6779 0.9349 6.7530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426452525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:38 Heat of formation + Delta-G solvation = -70.704126 kcal Electronic energy + Delta-G solvation = -27521.247586 eV Core-core repulsion = 23500.880137 eV Total energy + Delta-G solvation = -4020.367449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40026 -39.05098 -37.37741 -36.09765 -36.01793 -34.29436 -33.43651 -32.84286 -31.80000 -31.56797 -29.58793 -27.30402 -26.86251 -24.03256 -23.49660 -22.69192 -21.31120 -19.78389 -19.32491 -18.28176 -17.98956 -17.60560 -17.00308 -16.44280 -16.11226 -15.86967 -15.67045 -15.39693 -14.94473 -14.67976 -14.54437 -13.95299 -13.71212 -13.58928 -13.26629 -13.00891 -12.70608 -12.46322 -12.42154 -12.36163 -12.29102 -12.17235 -12.10750 -11.88157 -11.83407 -11.65109 -11.07565 -11.06308 -10.97584 -10.90123 -10.67835 -10.32237 -9.67448 -9.47236 -9.42038 -9.14335 -8.76683 -8.54805 -7.81513 -6.18441 -4.25453 0.14501 0.53311 0.98068 2.82927 2.99526 3.22771 3.25843 3.28508 3.30578 3.52604 3.79759 4.15308 4.28220 4.47490 4.58347 4.65273 4.73282 4.85682 4.99939 5.03492 5.12737 5.17527 5.19454 5.35492 5.43623 5.52162 5.61356 5.65842 5.72516 5.75346 5.81654 5.92666 6.01965 6.18255 6.53142 6.64935 6.76655 7.04856 7.45282 7.47643 7.53065 7.79378 7.97871 8.70363 8.84153 9.25084 9.43020 10.91702 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.002635 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.989539 B =10623.116846 C =11385.197802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.191 3.809 3 H 0.114 0.886 4 C -0.107 4.107 5 C -0.053 4.053 6 C -0.142 4.142 7 C -0.020 4.020 8 C -0.677 4.677 9 S 2.704 3.296 10 N -1.248 6.248 11 O -0.967 6.967 12 O -0.960 6.960 13 C -0.006 4.006 14 N -0.634 5.634 15 C 0.073 3.927 16 C 0.696 3.304 17 O -0.596 6.596 18 N -0.727 5.727 19 C 0.267 3.733 20 C -0.543 4.543 21 H 0.061 0.939 22 C 0.065 3.935 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.420 0.580 35 H 0.420 0.580 36 H 0.145 0.855 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.387 0.613 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -7.995 -19.196 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 H 0.132 0.868 4 C -0.110 4.110 5 C -0.072 4.072 6 C -0.161 4.161 7 C -0.039 4.039 8 C -0.765 4.765 9 S 2.792 3.208 10 N -0.923 5.923 11 O -0.957 6.957 12 O -0.949 6.949 13 C -0.026 4.026 14 N -0.373 5.373 15 C -0.071 4.071 16 C 0.397 3.603 17 O -0.475 6.475 18 N -0.380 5.380 19 C 0.146 3.854 20 C -0.582 4.582 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.522 5.522 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.250 0.750 35 H 0.248 0.752 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.221 0.779 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.431 -6.552 -19.990 22.663 hybrid contribution 0.463 -1.673 1.723 2.446 sum -7.968 -8.225 -18.267 21.560 Atomic orbital electron populations 1.22169 0.94052 1.02382 1.03037 1.19728 0.93790 0.97461 0.80418 0.86777 1.20450 0.99134 0.94724 0.96673 1.21625 0.95212 0.94055 0.96288 1.21283 0.99761 1.00489 0.94547 1.20916 0.93412 0.91669 0.97948 1.30608 1.21235 1.07570 1.17049 1.01451 0.72467 0.73924 0.72929 1.53104 1.26392 1.94496 1.18269 1.93585 1.85518 1.73882 1.42728 1.93627 1.82321 1.33026 1.85911 1.20943 0.91316 1.00129 0.90235 1.47084 1.48455 1.16409 1.25340 1.21824 0.99589 0.83862 1.01801 1.16085 0.79218 0.84531 0.80477 1.90863 1.62622 1.18438 1.75572 1.45872 1.48558 1.19178 1.24350 1.18989 0.86662 0.93001 0.86789 1.21163 1.27586 1.01458 1.07981 0.92100 1.24937 0.95525 0.95332 0.98144 1.69959 1.29493 1.18009 1.34728 0.86478 0.78315 0.80490 0.81616 1.20098 1.21043 1.20086 0.91271 0.91177 0.92220 0.84706 0.84923 0.84219 0.75000 0.75234 0.83750 0.92980 0.90882 0.91058 0.77940 0.95753 0.95702 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.89 37.16 0.33 -1.20 16 2 C 0.19 2.43 2.95 -69.08 -0.20 2.22 16 3 H 0.11 1.71 6.66 -51.93 -0.35 1.36 16 4 C -0.11 -1.24 4.96 -104.62 -0.52 -1.76 16 5 C -0.05 -0.51 8.14 -39.58 -0.32 -0.83 16 6 C -0.14 -1.21 10.05 -39.59 -0.40 -1.61 16 7 C -0.02 -0.18 9.52 -39.58 -0.38 -0.56 16 8 C -0.68 -7.00 5.97 -39.58 -0.24 -7.23 16 9 S 2.70 26.92 6.28 -107.50 -0.68 26.25 16 10 N -1.25 -8.58 9.52 60.35 0.57 -8.01 16 11 O -0.97 -11.66 17.29 -57.17 -0.99 -12.65 16 12 O -0.96 -12.89 17.29 -57.17 -0.99 -13.88 16 13 C -0.01 -0.07 9.15 -39.58 -0.36 -0.44 16 14 N -0.63 -9.19 2.75 -181.01 -0.50 -9.69 16 15 C 0.07 0.76 8.11 59.85 0.49 1.24 16 16 C 0.70 14.01 8.28 -86.92 -0.72 13.29 16 17 O -0.60 -14.41 15.68 5.29 0.08 -14.33 16 18 N -0.73 -15.25 5.41 -66.42 -0.36 -15.61 16 19 C 0.27 7.02 5.43 -5.20 -0.03 6.99 16 20 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 21 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.88 -25.81 13.29 55.43 0.74 -25.07 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.47 6.03 -51.93 -0.31 0.16 16 31 H 0.14 1.01 4.97 -52.49 -0.26 0.74 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.05 7.62 -52.48 -0.40 0.65 16 34 H 0.42 2.07 8.96 -34.46 -0.31 1.76 16 35 H 0.42 2.46 8.96 -34.47 -0.31 2.15 16 36 H 0.14 1.68 7.51 -52.49 -0.39 1.28 16 37 H 0.05 0.49 7.10 -51.93 -0.37 0.12 16 38 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 39 H 0.07 0.54 5.44 -51.93 -0.28 0.26 16 40 H 0.39 6.95 6.03 -40.82 -0.25 6.70 16 41 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -37.77 366.71 -9.58 -47.35 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.21 Total: 7.67 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.77 Total: -3.07 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.45 Total: -58.37 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.89 Total: -40.86 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 26.92 SS G_CDS: -0.68 Total: 26.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.77 -9.58 -47.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.355 kcal (2) G-P(sol) polarization free energy of solvation -37.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds