Wall clock time and date at job start Tue Mar 31 2020 23:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99677 * 2 1 4 4 N 1.34775 * 120.00253 * 179.97438 * 2 1 3 5 5 C 1.39402 * 120.00100 * 185.09108 * 4 2 1 6 6 C 1.39042 * 119.69714 * 174.92210 * 5 4 2 7 7 C 1.38364 * 119.10360 * 180.02562 * 6 5 4 8 8 C 1.38843 * 118.49158 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.34212 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46908 * 89.99885 * 9 8 7 11 11 S 1.65602 * 119.99793 * 165.00016 * 10 9 8 12 12 O 1.42097 * 104.27626 * 181.07190 * 11 10 9 13 13 O 1.42095 * 104.27791 * 308.92788 * 11 10 9 14 14 C 1.81400 * 104.45007 * 65.00130 * 11 10 9 15 15 C 1.52997 * 109.47231 * 180.02562 * 14 11 10 16 16 C 1.53003 * 109.47480 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47416 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00108 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99917 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46890 * 90.00626 * 21 19 17 23 23 H 1.48499 * 109.46704 * 210.00096 * 21 19 17 24 24 H 1.48494 * 109.47188 * 330.00476 * 21 19 17 25 25 C 1.38070 * 119.30967 * 0.02562 * 8 7 6 26 26 N 1.31931 * 120.85326 * 0.02562 * 25 8 7 27 27 H 1.08995 * 109.47384 * 270.00038 * 1 2 3 28 28 H 1.08999 * 109.47212 * 30.00949 * 1 2 3 29 29 H 1.09004 * 109.46694 * 150.00320 * 1 2 3 30 30 H 0.97005 * 119.99943 * 5.09547 * 4 2 1 31 31 H 1.07998 * 120.44768 * 0.26770 * 6 5 4 32 32 H 1.07993 * 120.75492 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47217 * 210.00095 * 9 8 7 34 34 H 1.08997 * 109.46998 * 329.99957 * 9 8 7 35 35 H 0.96995 * 120.00346 * 344.99866 * 10 9 8 36 36 H 1.09000 * 109.46789 * 299.99826 * 14 11 10 37 37 H 1.08995 * 109.47431 * 59.99910 * 14 11 10 38 38 H 1.09000 * 109.47178 * 300.00175 * 15 14 11 39 39 H 1.09011 * 109.47286 * 59.99989 * 15 14 11 40 40 H 1.09000 * 109.47496 * 300.00517 * 16 15 14 41 41 H 1.09002 * 109.46201 * 60.00074 * 16 15 14 42 42 H 0.96993 * 119.99609 * 179.97438 * 20 19 17 43 43 H 1.08004 * 119.57058 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5708 -1.1694 0.1077 6 6 4.2515 -2.3772 0.2142 7 6 5.6310 -2.3651 0.3205 8 6 6.2849 -1.1403 0.3159 9 6 7.7864 -1.0786 0.4287 10 7 8.3788 -1.1204 -0.9105 11 16 9.9657 -0.6993 -1.1273 12 8 10.1757 -0.8332 -2.5263 13 8 10.0840 0.5633 -0.4863 14 6 10.8976 -1.9638 -0.2200 15 6 12.3960 -1.6811 -0.3453 16 6 13.1820 -2.7472 0.4205 17 6 14.6579 -2.4691 0.2965 18 1 15.0010 -1.6169 -0.2713 19 6 15.5702 -3.3026 0.9081 20 7 15.1525 -4.3406 1.5992 21 14 17.3997 -2.9574 0.7549 22 1 17.8321 -2.0762 1.8692 23 1 18.1514 -4.2366 0.8153 24 1 17.6698 -2.2851 -0.5413 25 6 5.5452 0.0204 0.2068 26 7 4.2303 -0.0220 0.1080 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6988 -2.0056 -0.0737 31 1 3.7110 -3.3122 0.2102 32 1 6.1865 -3.2874 0.4042 33 1 8.0757 -0.1524 0.9253 34 1 8.1423 -1.9291 1.0101 35 1 7.8417 -1.3946 -1.6701 36 1 10.6108 -1.9418 0.8314 37 1 10.6768 -2.9466 -0.6363 38 1 12.6831 -1.7026 -1.3966 39 1 12.6165 -0.6982 0.0715 40 1 12.8948 -2.7253 1.4718 41 1 12.9616 -3.7301 0.0041 42 1 15.7943 -4.9272 2.0290 43 1 6.0496 0.9754 0.2024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433350483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:14 Heat of formation + Delta-G solvation = -74.538933 kcal Electronic energy + Delta-G solvation = -26027.959965 eV Core-core repulsion = 22007.426227 eV Total energy + Delta-G solvation = -4020.533738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21095 -39.50020 -36.93100 -36.23185 -35.73632 -34.82893 -34.67762 -32.67266 -32.19402 -31.35975 -29.67068 -27.81869 -25.85387 -24.42240 -23.73419 -22.48409 -21.01255 -20.68400 -19.23930 -18.65516 -17.68757 -17.49163 -16.86107 -16.46900 -16.18734 -15.94602 -15.70259 -15.34220 -15.03909 -14.79306 -14.49574 -14.28764 -14.16515 -13.97980 -13.67968 -13.39459 -13.13810 -12.78399 -12.60831 -12.47511 -12.28002 -11.94522 -11.83240 -11.77528 -11.69580 -11.24477 -11.09200 -10.92676 -10.85594 -10.64103 -10.43998 -10.19612 -9.95935 -9.81232 -9.43646 -9.31084 -9.09469 -8.66018 -8.41444 -6.06630 -4.09524 0.37146 0.70272 0.94694 2.20884 2.38659 2.87544 3.30238 3.36389 3.40597 3.54231 3.92241 3.95173 4.25539 4.37766 4.41376 4.42167 4.53451 4.57147 4.63988 4.71212 4.83740 5.02969 5.05140 5.17495 5.22527 5.27882 5.30115 5.44020 5.52327 5.64623 5.76724 5.88214 5.93526 6.26241 6.34494 6.44131 6.68376 6.84477 6.87668 7.54844 7.55829 7.65743 7.86182 7.91480 8.32086 8.96728 9.55299 11.04552 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.001785 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.127319 B =15678.887247 C =16183.734823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.498 3.502 3 O -0.474 6.474 4 N -0.664 5.664 5 C 0.359 3.641 6 C -0.209 4.209 7 C -0.030 4.030 8 C -0.179 4.179 9 C 0.163 3.837 10 N -1.122 6.122 11 S 2.601 3.399 12 O -0.962 6.962 13 O -0.960 6.960 14 C -0.608 4.608 15 C -0.106 4.106 16 C 0.030 3.970 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.153 3.847 26 N -0.478 5.478 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.417 0.583 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.259 1.053 -1.510 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.284 3.716 3 O -0.343 6.343 4 N -0.312 5.312 5 C 0.128 3.872 6 C -0.232 4.232 7 C -0.057 4.057 8 C -0.184 4.184 9 C 0.037 3.963 10 N -0.880 5.880 11 S 2.697 3.303 12 O -0.953 6.953 13 O -0.950 6.950 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.006 4.006 26 N -0.192 5.192 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.254 0.746 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -30.962 3.345 -1.812 31.195 hybrid contribution 0.885 -2.058 0.149 2.245 sum -30.077 1.287 -1.663 30.150 Atomic orbital electron populations 1.21908 0.90667 1.05281 1.05140 1.21134 0.90731 0.83367 0.76362 1.90869 1.69978 1.30356 1.43072 1.43780 1.04078 1.10890 1.72459 1.18579 0.84723 0.90039 0.93893 1.21462 0.95304 0.97378 1.09059 1.21363 0.93334 0.98142 0.92875 1.20759 0.96496 0.94404 1.06765 1.20067 0.88830 1.03534 0.83876 1.55832 1.30257 1.87060 1.14884 1.05314 0.73333 0.76560 0.75096 1.93582 1.84308 1.87517 1.29865 1.93570 1.85137 1.38420 1.77909 1.30543 1.11439 1.17617 1.14435 1.21504 0.87736 1.02785 1.02555 1.19065 0.93985 0.92674 0.95077 1.21262 0.91299 1.11487 1.32424 0.92355 1.25018 0.99209 0.95011 0.95125 1.69955 1.34420 1.15294 1.33773 0.86551 0.84968 0.77644 0.78628 1.20567 1.21192 1.19743 1.22735 0.88027 0.98485 0.91305 1.67729 1.09441 1.26754 1.15281 0.88477 0.88412 0.90005 0.74581 0.84485 0.83889 0.88921 0.90436 0.75136 0.85481 0.85287 0.91569 0.91514 0.96110 0.96134 0.92920 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.31 36.00 0.37 -0.14 16 2 C 0.50 3.99 7.90 -10.99 -0.09 3.90 16 3 O -0.47 -6.38 15.36 5.56 0.09 -6.29 16 4 N -0.66 -4.15 5.39 -11.43 -0.06 -4.21 16 5 C 0.36 3.27 7.42 -154.71 -1.15 2.12 16 6 C -0.21 -1.37 9.94 -39.24 -0.39 -1.76 16 7 C -0.03 -0.21 9.85 -39.31 -0.39 -0.60 16 8 C -0.18 -1.54 5.29 -104.46 -0.55 -2.09 16 9 C 0.16 1.40 6.28 -5.19 -0.03 1.37 16 10 N -1.12 -11.18 5.88 -11.66 -0.07 -11.25 16 11 S 2.60 36.18 5.46 -107.50 -0.59 35.59 16 12 O -0.96 -16.53 18.08 -57.54 -1.04 -17.57 16 13 O -0.96 -16.22 17.50 -57.54 -1.01 -17.22 16 14 C -0.61 -8.79 6.07 37.16 0.23 -8.56 16 15 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 16 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.15 1.61 10.85 -17.57 -0.19 1.41 16 26 N -0.48 -5.78 7.89 -12.37 -0.10 -5.87 16 27 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.42 0.76 8.70 -40.82 -0.36 0.40 16 31 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.09 0.81 7.64 -51.93 -0.40 0.42 16 34 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.42 3.63 8.61 -34.47 -0.30 3.33 16 36 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 37 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -40.69 384.85 -10.22 -50.92 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.08 Total: -1.29 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.88 Total: -19.47 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.51 Total: -46.94 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.96 Total: -41.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 36.18 SS G_CDS: -0.59 Total: 35.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -40.69 -10.22 -50.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433350483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.623 kcal (2) G-P(sol) polarization free energy of solvation -40.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds