Wall clock time and date at job start Tue Mar 31 2020 23:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 S 1.81404 * 109.47057 * 2 1 4 4 O 1.42091 * 110.54323 * 68.37521 * 3 2 1 5 5 O 1.42107 * 110.53964 * 291.62425 * 3 2 1 6 6 N 1.65601 * 104.45120 * 180.02562 * 3 2 1 7 7 C 1.46509 * 119.99882 * 64.99673 * 6 3 2 8 8 C 1.53001 * 109.46865 * 165.00332 * 7 6 3 9 9 N 1.46496 * 109.47021 * 180.02562 * 8 7 6 10 10 C 1.34776 * 120.00374 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99689 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00612 * 180.02562 * 10 9 8 13 13 C 1.39956 * 120.00280 * 184.30999 * 12 10 9 14 14 C 1.39290 * 119.94904 * 144.78318 * 13 12 10 15 15 C 1.38478 * 120.43066 * 179.97438 * 14 13 12 16 16 C 1.37681 * 120.32260 * 0.29488 * 15 14 13 17 17 C 1.40749 * 119.88209 * 359.48141 * 16 15 14 18 18 C 1.41405 * 120.20939 * 180.26422 * 17 16 15 19 19 H 1.08001 * 119.99912 * 214.94508 * 18 17 16 20 20 C 1.39935 * 119.99933 * 34.95249 * 18 17 16 21 21 N 1.30823 * 120.00024 * 355.53789 * 20 18 17 22 22 Si 1.86806 * 119.99782 * 175.54311 * 20 18 17 23 23 H 1.48501 * 109.46967 * 89.99555 * 22 20 18 24 24 H 1.48501 * 109.47036 * 209.99772 * 22 20 18 25 25 H 1.48501 * 109.46921 * 329.99791 * 22 20 18 26 26 C 1.38234 * 119.94572 * 324.80404 * 13 12 10 27 27 H 1.09001 * 109.47009 * 299.99561 * 1 2 3 28 28 H 1.09001 * 109.47692 * 60.00187 * 1 2 3 29 29 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47052 * 239.99885 * 2 1 3 31 31 H 1.09001 * 109.47692 * 119.99813 * 2 1 3 32 32 H 0.96999 * 120.00506 * 245.00224 * 6 3 2 33 33 H 1.08997 * 109.46887 * 45.00155 * 7 6 3 34 34 H 1.09000 * 109.47177 * 284.99844 * 7 6 3 35 35 H 1.08996 * 109.47104 * 59.99855 * 8 7 6 36 36 H 1.09000 * 109.46825 * 299.99728 * 8 7 6 37 37 H 0.97003 * 119.99946 * 0.02562 * 9 8 7 38 38 H 0.97003 * 119.99566 * 4.30506 * 12 10 9 39 39 H 1.08004 * 119.78019 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.83928 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.06101 * 179.72110 * 16 15 14 42 42 H 0.97006 * 119.99757 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.16050 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2369 5 8 1.8384 2.3438 -1.2371 6 7 3.7842 1.5654 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9617 1.2837 -1.0782 9 7 6.6439 0.6862 -2.2287 10 6 7.9752 0.8361 -2.3753 11 8 8.6100 1.4677 -1.5529 12 7 8.6028 0.2868 -3.4340 13 6 9.9962 0.3650 -3.5395 14 6 10.7118 -0.6924 -4.0964 15 6 12.0906 -0.6254 -4.2061 16 6 12.7702 0.4858 -3.7599 17 6 12.0601 1.5639 -3.1993 18 6 12.7506 2.7108 -2.7440 19 1 12.3960 3.2450 -1.8749 20 6 13.8932 3.1537 -3.4196 21 7 14.3732 2.4585 -4.4185 22 14 14.7334 4.7375 -2.8949 23 1 15.7613 4.4354 -1.8666 24 1 15.3817 5.3677 -4.0729 25 1 13.7248 5.6685 -2.3279 26 6 10.6601 1.4912 -3.0905 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2988 1.8765 0.7604 33 1 4.0527 1.3772 -2.0723 34 1 4.3228 -0.1131 -1.1372 35 1 6.3754 0.8739 -0.1569 36 1 6.1054 2.3641 -1.0920 37 1 6.1372 0.1832 -2.8854 38 1 8.0886 -0.1628 -4.1228 39 1 10.1877 -1.5698 -4.4456 40 1 12.6359 -1.4506 -4.6399 41 1 13.8460 0.5316 -3.8435 42 1 15.1655 2.7654 -4.8865 43 1 10.1061 2.3116 -2.6586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455911188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:22 Heat of formation + Delta-G solvation = -78.840056 kcal Electronic energy + Delta-G solvation = -26175.506211 eV Core-core repulsion = 22154.785962 eV Total energy + Delta-G solvation = -4020.720249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01139 -37.67730 -37.47058 -36.55041 -36.34291 -34.40210 -33.98109 -33.71879 -32.90871 -29.75397 -29.11045 -27.36790 -25.23607 -24.63473 -23.30168 -21.66868 -20.84271 -20.16690 -19.74962 -18.29873 -18.15372 -17.58229 -16.89014 -16.69944 -15.95834 -15.80699 -15.49898 -15.20896 -14.68902 -14.65979 -14.56699 -14.30848 -14.01486 -13.78998 -13.13180 -13.05280 -12.86916 -12.72246 -12.56277 -12.47221 -12.35325 -12.16234 -12.11462 -11.90421 -11.61965 -11.15974 -11.14115 -11.07341 -10.92192 -10.39067 -10.24502 -10.02202 -9.70106 -9.42145 -9.22725 -9.03320 -8.87345 -7.33424 -6.86280 -6.52382 -4.32556 -0.24524 2.13525 2.75257 2.88829 3.02901 3.14563 3.17575 3.26220 3.30555 3.66221 3.68082 4.01173 4.04556 4.20653 4.26847 4.52640 4.58444 4.65005 4.76728 4.87635 4.97967 5.07876 5.11497 5.35525 5.55952 5.66435 5.72676 6.24197 6.36477 6.40013 6.47141 6.74160 6.78904 7.07555 7.16661 7.28029 7.39302 7.72773 7.82012 8.02175 8.18571 8.30242 8.41732 8.74533 8.91714 9.03497 9.05056 10.36899 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.001875 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.030621 B =14932.030827 C =16028.355232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.632 4.632 3 S 2.615 3.385 4 O -0.955 6.955 5 O -0.952 6.952 6 N -1.117 6.117 7 C 0.103 3.897 8 C 0.134 3.866 9 N -0.751 5.751 10 C 0.699 3.301 11 O -0.563 6.563 12 N -0.679 5.679 13 C 0.156 3.844 14 C -0.250 4.250 15 C -0.100 4.100 16 C -0.160 4.160 17 C 0.112 3.888 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.814 5.814 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.197 4.197 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.422 0.578 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.276 0.724 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.662 -7.704 4.912 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.706 3.294 4 O -0.945 6.945 5 O -0.942 6.942 6 N -0.877 5.877 7 C -0.024 4.024 8 C 0.008 3.992 9 N -0.410 5.410 10 C 0.399 3.601 11 O -0.438 6.438 12 N -0.325 5.325 13 C 0.063 3.937 14 C -0.272 4.272 15 C -0.119 4.119 16 C -0.180 4.180 17 C 0.110 3.890 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.144 4.144 21 N -0.442 5.442 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.219 4.219 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.257 0.743 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.146 0.854 42 H 0.087 0.913 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.485 -6.351 5.383 24.917 hybrid contribution 0.275 -0.520 -0.287 0.654 sum -23.210 -6.871 5.096 24.736 Atomic orbital electron populations 1.21514 0.90349 1.05217 1.03615 1.30501 1.07435 1.26418 1.11803 1.04963 0.72873 0.77184 0.74387 1.93624 1.82886 1.72898 1.45099 1.93622 1.83155 1.71884 1.45562 1.55462 1.26134 1.78187 1.27927 1.21443 0.93843 0.97963 0.89133 1.21175 0.88947 0.99679 0.89396 1.44900 1.06978 1.60463 1.28661 1.15915 0.81125 0.80567 0.82482 1.90987 1.64417 1.44177 1.44236 1.42512 1.06989 1.59688 1.23329 1.17256 0.79043 0.95079 1.02279 1.20092 0.94311 0.97775 1.15015 1.20524 0.93029 0.97845 1.00496 1.21629 1.00605 0.92174 1.03594 1.17580 0.90066 0.91970 0.89433 1.19519 1.07828 1.09629 1.12122 0.90602 1.25854 0.95997 0.98599 0.93999 1.69762 1.20000 1.36935 1.17482 0.86215 0.79546 0.81573 0.78735 1.19560 1.20375 1.18730 1.21304 0.94471 0.97111 1.09001 0.90857 0.90816 0.89904 0.84998 0.84772 0.74279 0.89343 0.91089 0.90749 0.90524 0.77252 0.77214 0.89321 0.88986 0.85377 0.91284 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.92 37.15 0.37 -0.19 16 2 C -0.63 -2.21 6.79 37.15 0.25 -1.96 16 3 S 2.61 18.10 5.46 -107.50 -0.59 17.52 16 4 O -0.95 -9.91 18.08 -57.54 -1.04 -10.95 16 5 O -0.95 -10.02 17.49 -57.54 -1.01 -11.02 16 6 N -1.12 -6.65 5.89 -10.61 -0.06 -6.71 16 7 C 0.10 0.60 6.25 -4.04 -0.03 0.58 16 8 C 0.13 1.27 5.82 -4.04 -0.02 1.25 16 9 N -0.75 -8.24 5.56 -65.23 -0.36 -8.60 16 10 C 0.70 11.97 8.40 -86.92 -0.73 11.24 16 11 O -0.56 -12.48 13.78 5.29 0.07 -12.40 16 12 N -0.68 -11.59 5.34 -14.27 -0.08 -11.67 16 13 C 0.16 3.47 6.29 -83.76 -0.53 2.94 16 14 C -0.25 -5.39 9.97 -39.10 -0.39 -5.78 16 15 C -0.10 -2.31 10.01 -39.70 -0.40 -2.71 16 16 C -0.16 -4.21 8.67 -38.84 -0.34 -4.55 16 17 C 0.11 3.11 5.55 -106.85 -0.59 2.52 16 18 C -0.46 -12.81 9.04 -37.74 -0.34 -13.15 16 19 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 20 C 0.07 1.83 5.42 -17.35 -0.09 1.73 16 21 N -0.81 -21.58 10.61 55.55 0.59 -20.99 16 22 Si 0.91 19.68 29.56 -169.99 -5.03 14.66 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.20 -5.13 8.43 -38.69 -0.33 -5.45 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.42 2.23 8.62 -34.48 -0.30 1.94 16 33 H 0.09 0.51 7.69 -51.93 -0.40 0.11 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 2.81 8.49 -40.82 -0.35 2.46 16 38 H 0.39 5.01 8.84 -40.82 -0.36 4.65 16 39 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.13 3.49 6.15 -52.49 -0.32 3.17 16 42 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 43 H 0.11 3.09 6.22 -52.49 -0.33 2.76 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -37.80 377.07 -10.81 -48.60 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.83 Total: 9.42 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.16 Total: -13.53 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.09 Total: -47.97 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.97 Total: -34.37 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.66 kcal Atomic # 16 Polarization: 18.10 SS G_CDS: -0.59 Total: 17.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.80 -10.81 -48.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455911188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.236 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds