Wall clock time and date at job start Tue Mar 31 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46733 * 2 1 4 4 S 1.81401 * 109.46982 * 180.02562 * 3 2 1 5 5 O 1.42100 * 110.54240 * 73.33290 * 4 3 2 6 6 O 1.42097 * 110.54586 * 296.58222 * 4 3 2 7 7 N 1.65598 * 104.44971 * 184.95630 * 4 3 2 8 8 C 1.39925 * 120.00232 * 298.74265 * 7 4 3 9 9 C 1.38881 * 120.00463 * 133.81868 * 8 7 4 10 10 C 1.38072 * 119.99205 * 180.30290 * 9 8 7 11 11 C 1.38837 * 120.00449 * 359.44710 * 10 9 8 12 12 N 1.40199 * 119.99598 * 180.27791 * 11 10 9 13 13 C 1.34772 * 120.00367 * 213.56054 * 12 11 10 14 14 O 1.21594 * 119.99832 * 5.15895 * 13 12 11 15 15 N 1.34770 * 120.00576 * 185.15120 * 13 12 11 16 16 C 1.46499 * 120.00578 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47468 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99828 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99906 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00090 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46819 * 90.00581 * 21 19 17 23 23 H 1.48501 * 109.47346 * 210.00305 * 21 19 17 24 24 H 1.48495 * 109.47267 * 330.00658 * 21 19 17 25 25 C 1.38838 * 120.01127 * 0.55184 * 11 10 9 26 26 C 1.38075 * 120.00410 * 359.73058 * 25 11 10 27 27 H 1.08999 * 109.47412 * 59.99854 * 1 2 3 28 28 H 1.09000 * 109.46746 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46686 * 299.99537 * 1 2 3 30 30 H 1.09000 * 109.46686 * 240.00463 * 2 1 3 31 31 H 1.08991 * 109.47356 * 119.99777 * 2 1 3 32 32 H 1.08995 * 109.47547 * 60.00162 * 3 2 1 33 33 H 1.09005 * 109.47040 * 299.99898 * 3 2 1 34 34 H 0.96995 * 120.00010 * 118.74692 * 7 4 3 35 35 H 1.07998 * 120.00124 * 0.02961 * 9 8 7 36 36 H 1.07996 * 119.99312 * 179.72411 * 10 9 8 37 37 H 0.97003 * 119.99976 * 33.56571 * 12 11 10 38 38 H 0.97007 * 119.99890 * 0.02562 * 15 13 12 39 39 H 1.08999 * 109.47454 * 300.00657 * 16 15 13 40 40 H 1.08997 * 109.46737 * 60.00269 * 16 15 13 41 41 H 0.97002 * 119.99785 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.99966 * 179.69602 * 25 11 10 43 43 H 1.08003 * 120.00289 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 -0.0008 5 8 4.3521 1.0612 -1.2758 6 8 4.3532 0.8470 1.1889 7 7 4.2672 3.0402 0.1378 8 6 3.8770 3.9520 -0.8492 9 6 3.3208 5.1719 -0.4870 10 6 2.9301 6.0688 -1.4614 11 6 3.1039 5.7560 -2.8028 12 7 2.7126 6.6694 -3.7919 13 6 2.2344 6.2229 -4.9702 14 8 2.0541 5.0327 -5.1415 15 7 1.9559 7.0957 -5.9587 16 6 1.4357 6.6104 -7.2394 17 6 1.2102 7.7782 -8.1649 18 1 1.4326 8.7814 -7.8326 19 6 0.7200 7.5658 -9.4359 20 7 0.5237 8.5848 -10.2438 21 14 0.3359 5.8305 -10.0110 22 1 -1.0738 5.5002 -9.6806 23 1 0.5342 5.7405 -11.4799 24 1 1.2417 4.8713 -9.3295 25 6 3.6600 4.5366 -3.1652 26 6 4.0455 3.6369 -2.1913 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5137 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 4.7797 3.3439 0.9033 35 1 3.1897 5.4170 0.5566 36 1 2.4935 7.0156 -1.1798 37 1 2.7860 7.6226 -3.6282 38 1 2.1000 8.0452 -5.8222 39 1 2.1552 5.9254 -7.6878 40 1 0.4924 6.0897 -7.0744 41 1 0.1784 8.4354 -11.1379 42 1 3.7906 4.2914 -4.2089 43 1 4.4777 2.6881 -2.4732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488475194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:33 Heat of formation + Delta-G solvation = -76.189842 kcal Electronic energy + Delta-G solvation = -26824.419535 eV Core-core repulsion = 22803.814208 eV Total energy + Delta-G solvation = -4020.605327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.45606 -38.97261 -37.44918 -36.35756 -35.88386 -35.29956 -34.37143 -33.53018 -32.34596 -31.06254 -28.74689 -28.12365 -27.23839 -23.33959 -22.99280 -22.38932 -21.72374 -20.45611 -19.74628 -18.60244 -18.03754 -17.92449 -17.47219 -16.80595 -16.43394 -16.20751 -15.42565 -15.19560 -14.92091 -14.70445 -14.26198 -14.15979 -13.98085 -13.63394 -13.48719 -13.21739 -13.09993 -12.99829 -12.83556 -12.55202 -12.46688 -12.42245 -12.28377 -12.13420 -11.88229 -11.70784 -11.37406 -11.05526 -10.97676 -10.83091 -10.62056 -10.02131 -9.93103 -9.73632 -9.53483 -9.05748 -8.83481 -8.33391 -7.81304 -6.25847 -4.28746 -0.19179 1.15118 1.27743 2.24850 2.96302 3.24429 3.32019 3.32231 3.37564 3.39983 3.78636 3.83988 4.07245 4.29662 4.33950 4.63456 4.68115 4.75122 4.80531 4.86450 4.93178 5.09655 5.17320 5.18023 5.26026 5.40547 5.50950 5.53472 5.60680 5.76167 5.93767 6.05115 6.23931 6.28435 6.52203 6.64184 6.67563 7.01016 7.02984 7.09800 7.23782 7.40867 8.18042 8.50485 8.71930 8.96269 9.33770 10.85933 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002337 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.488729 B =11979.562769 C =12910.430557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.624 4.624 4 S 2.605 3.395 5 O -0.945 6.945 6 O -0.957 6.957 7 N -1.056 6.056 8 C 0.103 3.897 9 C -0.108 4.108 10 C -0.140 4.140 11 C 0.179 3.821 12 N -0.694 5.694 13 C 0.692 3.308 14 O -0.584 6.584 15 N -0.714 5.714 16 C 0.237 3.763 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.101 4.101 26 C -0.128 4.128 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.423 0.577 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.406 0.594 38 H 0.395 0.605 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.146 0.854 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -9.856 25.451 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.754 4.754 4 S 2.700 3.300 5 O -0.935 6.935 6 O -0.948 6.948 7 N -0.807 5.807 8 C 0.008 3.992 9 C -0.130 4.130 10 C -0.161 4.161 11 C 0.081 3.919 12 N -0.342 5.342 13 C 0.392 3.608 14 O -0.462 6.462 15 N -0.366 5.366 16 C 0.115 3.885 17 C -0.583 4.583 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.122 4.122 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.259 0.741 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.241 0.759 38 H 0.228 0.772 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.164 0.836 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.541 -11.674 24.773 27.760 hybrid contribution -0.627 0.898 0.101 1.099 sum 3.915 -10.776 24.875 27.390 Atomic orbital electron populations 1.21721 0.93616 1.02426 1.02668 1.21269 0.98995 0.91637 1.03634 1.30569 1.26162 1.06331 1.12366 1.05339 0.77849 0.72328 0.74513 1.93590 1.77035 1.80624 1.42265 1.93605 1.78253 1.74458 1.48443 1.53242 1.67752 1.27207 1.32484 1.17337 1.02340 0.92052 0.87508 1.20823 0.99298 0.93488 0.99424 1.20736 1.03574 1.01115 0.90719 1.17669 0.95569 0.91110 0.87507 1.42866 1.67643 1.09212 1.14481 1.16131 0.78652 0.86037 0.79995 1.90900 1.59544 1.14535 1.81191 1.45462 1.67738 1.09147 1.14226 1.19439 0.93995 0.96178 0.78918 1.21056 1.45807 0.93589 0.97863 0.90232 1.24777 0.94311 0.97376 0.96102 1.69876 1.44380 1.30577 1.08005 0.86814 0.79744 0.84873 0.78250 1.19831 1.20867 1.18386 1.21243 0.96918 0.92830 1.01181 1.21812 1.00369 1.02073 0.90707 0.91891 0.91845 0.92252 0.90227 0.90276 0.84762 0.84333 0.74069 0.85296 0.85210 0.75891 0.77156 0.95578 0.96104 0.92187 0.83602 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.80 5.94 -26.73 -0.16 -0.96 16 3 C -0.62 -4.29 5.93 37.16 0.22 -4.07 16 4 S 2.60 23.64 5.36 -107.50 -0.58 23.06 16 5 O -0.95 -11.83 15.17 -57.54 -0.87 -12.70 16 6 O -0.96 -10.80 18.08 -57.54 -1.04 -11.84 16 7 N -1.06 -8.31 5.68 32.45 0.18 -8.13 16 8 C 0.10 1.02 6.03 -83.69 -0.50 0.51 16 9 C -0.11 -0.92 9.96 -39.40 -0.39 -1.31 16 10 C -0.14 -1.35 9.96 -39.42 -0.39 -1.75 16 11 C 0.18 2.30 6.29 -83.59 -0.53 1.78 16 12 N -0.69 -9.29 5.36 -14.18 -0.08 -9.36 16 13 C 0.69 12.66 8.30 -86.93 -0.72 11.94 16 14 O -0.58 -12.76 14.02 5.28 0.07 -12.69 16 15 N -0.71 -13.71 5.55 -66.42 -0.37 -14.08 16 16 C 0.24 5.63 4.50 -5.19 -0.02 5.61 16 17 C -0.55 -14.52 9.83 -34.44 -0.34 -14.86 16 18 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 19 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 21 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 25 C -0.10 -1.44 8.65 -39.42 -0.34 -1.78 16 26 C -0.13 -1.60 9.23 -39.40 -0.36 -1.96 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.14 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.42 2.35 8.92 -34.47 -0.31 2.05 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.41 3.99 8.84 -40.82 -0.36 3.63 16 38 H 0.39 6.51 8.34 -40.82 -0.34 6.17 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 40 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.15 2.43 6.40 -52.48 -0.34 2.09 16 43 H 0.16 2.05 5.63 -52.48 -0.30 1.76 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -35.97 373.55 -10.00 -45.97 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.79 Total: 8.32 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.27 Total: -5.33 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.51 Total: -56.77 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.84 Total: -37.23 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 23.64 SS G_CDS: -0.58 Total: 23.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.97 -10.00 -45.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488475194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.218 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds