Wall clock time and date at job start Tue Mar 31 2020 23:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45199 * 109.46708 * 2 1 4 4 C 1.34642 * 116.99625 * 179.97438 * 3 2 1 5 5 O 1.21504 * 120.00411 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00166 * 179.97438 * 4 3 2 7 7 C 1.38631 * 120.00190 * 180.02562 * 6 4 3 8 8 S 1.76202 * 126.04524 * 0.03208 * 7 6 4 9 9 C 1.76005 * 90.24305 * 179.97438 * 8 7 6 10 10 N 1.28477 * 110.09479 * 359.75533 * 9 8 7 11 11 C 1.33546 * 117.34005 * 0.45211 * 10 9 8 12 12 C 1.46619 * 122.79295 * 179.78847 * 11 10 9 13 13 O 1.21723 * 119.99687 * 179.71153 * 12 11 10 14 14 N 1.34777 * 120.00220 * 359.44025 * 12 11 10 15 15 C 1.46504 * 119.99854 * 180.27584 * 14 12 11 16 16 C 1.52996 * 109.46681 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46992 * 299.99452 * 16 15 14 18 18 C 1.52993 * 109.47598 * 59.99768 * 16 15 14 19 19 C 1.50708 * 109.46781 * 179.97438 * 16 15 14 20 20 H 1.08001 * 119.99800 * 0.02562 * 19 16 15 21 21 C 1.37876 * 119.99760 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00347 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99775 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46867 * 90.00546 * 23 21 19 25 25 H 1.48501 * 109.47216 * 210.00404 * 23 21 19 26 26 H 1.48499 * 109.47135 * 330.00745 * 23 21 19 27 27 H 1.09007 * 109.46789 * 59.99829 * 1 2 3 28 28 H 1.08999 * 109.46577 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47116 * 299.99773 * 1 2 3 30 30 H 1.09000 * 109.47116 * 240.00226 * 2 1 3 31 31 H 1.08994 * 109.47036 * 119.99971 * 2 1 3 32 32 H 0.97007 * 119.99986 * 0.02562 * 6 4 3 33 33 H 1.07994 * 124.95058 * 179.97438 * 9 8 7 34 34 H 0.97000 * 119.99736 * 0.26859 * 14 12 11 35 35 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 36 36 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 37 37 H 1.08998 * 109.47301 * 60.00473 * 17 16 15 38 38 H 1.09001 * 109.47119 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.47313 * 300.00024 * 17 16 15 40 40 H 1.09006 * 109.47169 * 59.99609 * 18 16 15 41 41 H 1.09001 * 109.47449 * 179.97438 * 18 16 15 42 42 H 1.08998 * 109.47377 * 299.99945 * 18 16 15 43 43 H 0.96996 * 120.00389 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0890 0.5819 0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2383 2.9724 0.0001 8 16 6.4529 1.6959 -0.0001 9 6 7.7331 2.9037 -0.0008 10 7 7.2262 4.0842 -0.0059 11 6 5.8942 4.1798 -0.0004 12 6 5.1904 5.4660 -0.0008 13 8 3.9735 5.4938 -0.0008 14 7 5.8908 6.6175 0.0045 15 6 5.1874 7.9026 0.0102 16 6 6.2079 9.0425 0.0160 17 6 7.0848 8.9355 1.2652 18 6 7.0861 8.9472 -1.2332 19 6 5.4844 10.3645 0.0212 20 1 4.4047 10.3891 0.0209 21 6 6.2009 11.5424 0.0275 22 7 7.5157 11.5124 0.0284 23 14 5.3041 13.1811 0.0333 24 1 5.0644 13.6092 1.4349 25 1 6.1311 14.2005 -0.6611 26 1 4.0038 13.0362 -0.6693 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2730 3.5601 -0.0003 33 1 8.7906 2.6844 -0.0007 34 1 6.8605 6.5953 0.0045 35 1 4.5623 7.9786 -0.8795 36 1 4.5621 7.9707 0.9003 37 1 7.6081 7.9794 1.2611 38 1 7.8116 9.7478 1.2696 39 1 6.4592 9.0034 2.1552 40 1 6.4614 9.0234 -2.1232 41 1 7.8129 9.7596 -1.2292 42 1 7.6094 7.9911 -1.2375 43 1 8.0198 12.3411 0.0325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496812875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:12 Heat of formation + Delta-G solvation = -76.407334 kcal Electronic energy + Delta-G solvation = -27188.743869 eV Core-core repulsion = 23168.129111 eV Total energy + Delta-G solvation = -4020.614758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27292 -40.16819 -38.32397 -37.56191 -36.38011 -35.44227 -33.25971 -32.15170 -30.92120 -29.61393 -26.42054 -25.67373 -25.36076 -24.54799 -23.76988 -22.26839 -22.22243 -20.36325 -19.23478 -18.80965 -18.38357 -17.29387 -17.16091 -16.65028 -16.07843 -15.64774 -15.48932 -14.96968 -14.78441 -14.64344 -14.38971 -14.00679 -13.92598 -13.42460 -13.22466 -12.88123 -12.71323 -12.59107 -12.17977 -12.10557 -12.01742 -11.70839 -11.35174 -11.32137 -11.16673 -11.02349 -10.84773 -10.68155 -10.35149 -10.20002 -9.85060 -9.70386 -9.59912 -9.28262 -9.25183 -8.75957 -8.63718 -8.38161 -8.22645 -5.99447 -4.09781 0.31963 0.76337 1.28671 1.77561 1.99722 2.34125 3.29699 3.36683 3.40087 3.57926 3.68058 3.69880 4.20264 4.42327 4.49926 4.51274 4.74621 4.82243 5.06666 5.17304 5.27076 5.33972 5.44652 5.56028 5.85812 5.93462 6.23690 6.32461 6.54639 6.66257 6.79499 6.90564 6.95764 7.03649 7.05946 7.36467 7.42077 7.59962 7.63999 7.72027 8.04632 8.05554 8.17347 8.40131 8.59270 8.90606 9.55776 11.01900 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002507 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.997930 B =11164.238174 C =12606.549144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.080 3.920 3 O -0.354 6.354 4 C 0.645 3.355 5 O -0.543 6.543 6 N -0.592 5.592 7 C 0.094 3.906 8 S 0.194 5.806 9 C 0.001 3.999 10 N -0.416 5.416 11 C -0.046 4.046 12 C 0.587 3.413 13 O -0.565 6.565 14 N -0.689 5.689 15 C 0.129 3.871 16 C 0.056 3.944 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.505 4.505 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.443 0.557 33 H 0.208 0.792 34 H 0.410 0.590 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.009 0.991 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.086 0.914 42 H 0.009 0.991 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -23.995 -0.058 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.006 3.994 3 O -0.267 6.267 4 C 0.399 3.601 5 O -0.432 6.432 6 N -0.247 5.247 7 C -0.129 4.129 8 S 0.443 5.557 9 C -0.301 4.301 10 N -0.129 5.129 11 C -0.182 4.182 12 C 0.371 3.629 13 O -0.446 6.446 14 N -0.337 5.337 15 C 0.007 3.993 16 C 0.055 3.945 17 C -0.190 4.190 18 C -0.190 4.190 19 C -0.544 4.544 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.290 0.710 33 H 0.225 0.775 34 H 0.247 0.753 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.008 -24.913 -0.070 25.412 hybrid contribution -0.623 1.905 0.016 2.005 sum -5.631 -23.008 -0.054 23.687 Atomic orbital electron populations 1.21860 0.92005 1.03337 1.04001 1.23145 0.95284 0.77722 1.03250 1.86305 1.20054 1.34180 1.86183 1.18008 0.82254 0.83487 0.76395 1.90961 1.59046 1.38882 1.54282 1.41445 1.03958 1.08482 1.70865 1.23655 0.87438 0.97568 1.04224 1.85836 0.94207 1.06159 1.69500 1.29196 1.04487 0.90173 1.06235 1.66489 1.09028 1.25258 1.12118 1.20491 0.88401 0.93243 1.16094 1.16890 0.86195 0.82567 0.77231 1.90626 1.13015 1.86850 1.54121 1.46127 1.11428 1.05670 1.70486 1.21839 0.96010 0.80728 1.00722 1.18364 0.91685 0.91426 0.93009 1.21837 1.00514 0.99191 0.97433 1.21835 1.00509 0.99202 0.97419 1.20968 0.92852 0.89672 1.50907 0.92440 1.24882 0.94858 0.98957 0.94840 1.69808 1.05048 1.26977 1.50494 0.86574 0.79703 0.83517 0.78071 1.20746 1.21288 1.19936 0.91165 0.89632 0.91160 0.90635 0.90633 0.71027 0.77514 0.75294 0.92364 0.92371 0.97227 0.89555 0.95490 0.95482 0.89557 0.97230 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.08 0.60 6.19 37.16 0.23 0.83 16 3 O -0.35 -3.82 10.27 -40.33 -0.41 -4.24 16 4 C 0.65 8.15 8.71 54.05 0.47 8.62 16 5 O -0.54 -7.26 13.72 -19.27 -0.26 -7.53 16 6 N -0.59 -8.05 5.33 -14.62 -0.08 -8.13 16 7 C 0.09 1.33 7.22 -14.78 -0.11 1.23 16 8 S 0.19 2.15 20.61 -107.50 -2.22 -0.07 16 9 C 0.00 0.01 12.44 51.36 0.64 0.65 16 10 N -0.42 -5.93 9.96 -10.79 -0.11 -6.04 16 11 C -0.05 -0.72 6.73 -84.04 -0.57 -1.29 16 12 C 0.59 10.79 7.77 -12.88 -0.10 10.69 16 13 O -0.56 -11.09 14.48 5.17 0.07 -11.01 16 14 N -0.69 -13.14 4.95 -61.63 -0.31 -13.45 16 15 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 16 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.13 -3.05 8.08 37.15 0.30 -2.75 16 19 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 22 N -0.88 -23.75 9.35 55.43 0.52 -23.23 16 23 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 27 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.44 6.26 6.38 -40.82 -0.26 6.00 16 33 H 0.21 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.41 7.60 5.65 -40.82 -0.23 7.37 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 38 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 43 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -29.83 368.49 -6.78 -36.60 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.60 Total: 8.85 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 1.09 Total: 6.91 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.03 Total: -50.84 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.60 Total: -22.77 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.22 Total: -0.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.83 -6.78 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496812875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.804 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds