Wall clock time and date at job start Tue Mar 31 2020 23:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35533 * 125.67987 * 2 1 4 4 C 1.35458 * 108.86877 * 180.30345 * 3 2 1 5 5 S 1.76194 * 126.06654 * 179.76755 * 4 3 2 6 6 O 1.42105 * 106.40276 * 23.52784 * 5 4 3 7 7 O 1.42103 * 106.40397 * 156.44338 * 5 4 3 8 8 N 1.65599 * 107.21961 * 269.98639 * 5 4 3 9 9 C 1.46924 * 120.62883 * 269.71908 * 8 5 4 10 10 C 1.53625 * 108.54233 * 126.37092 * 9 8 5 11 11 C 1.53035 * 109.24254 * 54.85703 * 10 9 8 12 12 C 1.50704 * 109.44812 * 178.50249 * 11 10 9 13 13 H 1.07995 * 120.00332 * 120.06138 * 12 11 10 14 14 C 1.37885 * 119.99454 * 300.05465 * 12 11 10 15 15 N 1.31511 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99650 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46897 * 90.00275 * 16 14 12 18 18 H 1.48501 * 109.47182 * 210.00234 * 16 14 12 19 19 H 1.48497 * 109.47169 * 330.00185 * 16 14 12 20 20 C 1.53044 * 109.53753 * 298.50668 * 11 10 9 21 21 C 1.46928 * 120.62888 * 90.00260 * 8 5 4 22 22 C 1.39832 * 107.86370 * 359.73510 * 4 3 2 23 23 C 1.37654 * 125.67273 * 179.84932 * 2 1 3 24 24 C 1.46670 * 126.23716 * 359.96404 * 23 2 1 25 25 N 1.34773 * 120.00413 * 183.96754 * 24 23 2 26 26 O 1.21697 * 120.00062 * 3.96417 * 24 23 2 27 27 H 1.08997 * 109.47048 * 264.35475 * 1 2 3 28 28 H 1.09002 * 109.46996 * 24.35510 * 1 2 3 29 29 H 1.09001 * 109.47027 * 144.35443 * 1 2 3 30 30 H 1.07994 * 125.56580 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.58843 * 246.20135 * 9 8 5 32 32 H 1.08995 * 109.58738 * 6.62386 * 9 8 5 33 33 H 1.09001 * 109.63246 * 294.86431 * 10 9 8 34 34 H 1.09004 * 109.45756 * 174.74385 * 10 9 8 35 35 H 1.08997 * 109.46484 * 58.52920 * 11 10 9 36 36 H 0.96995 * 119.99804 * 180.02562 * 15 14 12 37 37 H 1.08993 * 109.49884 * 301.42104 * 20 11 10 38 38 H 1.08993 * 109.52579 * 181.33315 * 20 11 10 39 39 H 1.08995 * 109.59203 * 353.36916 * 21 8 5 40 40 H 1.09000 * 109.58678 * 113.66079 * 21 8 5 41 41 H 1.08000 * 126.45648 * 180.02562 * 22 4 3 42 42 H 0.97008 * 119.99510 * 354.81239 * 25 24 23 43 43 H 0.97004 * 120.00581 * 174.53303 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0068 5 16 4.9571 1.7725 -0.0153 6 8 4.5257 3.0117 0.5302 7 8 6.0342 1.0188 0.5242 8 7 5.3395 2.0669 -1.5994 9 6 6.2801 1.1954 -2.3168 10 6 5.6057 0.7064 -3.6076 11 6 5.1277 1.9147 -4.4158 12 6 4.4980 1.4416 -5.7007 13 1 3.4661 1.6771 -5.9152 14 6 5.2397 0.7082 -6.6026 15 7 6.4962 0.4212 -6.3412 16 14 4.4595 0.1224 -8.1955 17 1 4.6546 1.1502 -9.2495 18 1 5.0972 -1.1496 -8.6205 19 1 3.0066 -0.0992 -7.9830 20 6 4.0964 2.6995 -3.6017 21 6 4.7494 3.2080 -2.3124 22 6 3.5779 -0.6889 -0.0051 23 6 2.2678 -1.1182 0.0029 24 6 1.8123 -2.5124 0.0073 25 7 2.7099 -3.5144 0.0906 26 8 0.6239 -2.7646 -0.0641 27 1 -0.3633 -0.1011 1.0227 28 1 -0.3633 0.9362 -0.4238 29 1 -0.3633 -0.8351 -0.5989 30 1 1.9083 2.1235 0.0004 31 1 7.1825 1.7554 -2.5623 32 1 6.5369 0.3410 -1.6906 33 1 4.7530 0.0747 -3.3586 34 1 6.3222 0.1345 -4.1973 35 1 5.9771 2.5587 -4.6432 36 1 7.0179 -0.0945 -6.9759 37 1 3.2580 2.0491 -3.3528 38 1 3.7385 3.5466 -4.1867 39 1 3.9958 3.6818 -1.6835 40 1 5.5291 3.9299 -2.5554 41 1 4.4582 -1.3146 -0.0088 42 1 3.6596 -3.3175 0.0718 43 1 2.4063 -4.4320 0.1735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515013845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:21 Heat of formation + Delta-G solvation = -69.099531 kcal Electronic energy + Delta-G solvation = -28769.753436 eV Core-core repulsion = 24749.455568 eV Total energy + Delta-G solvation = -4020.297868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64700 -38.99611 -37.67785 -36.92671 -35.52630 -34.29555 -33.41001 -32.93727 -30.84454 -30.03882 -29.61927 -26.95644 -25.73287 -23.49962 -22.52305 -22.29422 -21.61412 -20.02162 -19.38561 -18.67883 -18.06921 -17.16816 -16.93654 -16.29037 -16.15533 -15.87328 -15.59634 -15.32170 -14.58115 -14.52265 -14.30566 -13.98866 -13.62759 -13.42291 -13.14218 -12.91044 -12.81220 -12.73918 -12.62250 -12.60252 -12.06050 -11.88304 -11.78418 -11.32733 -11.12151 -10.96987 -10.81462 -10.63705 -10.37992 -10.35811 -10.05867 -9.99218 -9.58916 -9.40400 -9.15557 -8.97366 -8.62055 -8.39682 -8.22615 -6.02155 -4.08212 0.77686 1.22048 1.92931 2.40720 3.10090 3.27007 3.34403 3.36924 3.37258 3.47065 4.12583 4.37517 4.40464 4.62300 4.65577 4.78810 4.98647 5.13686 5.22772 5.27841 5.29741 5.37837 5.67795 5.77961 5.92270 6.11195 6.18755 6.24541 6.36791 6.45861 6.47102 6.52669 6.55074 6.74414 6.83210 6.93707 7.05766 7.09471 7.21750 7.43392 7.70788 7.96090 7.96273 8.08070 8.41854 8.95337 9.56638 11.03087 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.004570 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.286639 B = 6125.707470 C = 7662.268882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.401 5.401 3 C 0.142 3.858 4 C -0.746 4.746 5 S 2.717 3.283 6 O -0.972 6.972 7 O -0.965 6.965 8 N -0.989 5.989 9 C 0.120 3.880 10 C -0.122 4.122 11 C 0.051 3.949 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.123 4.123 21 C 0.123 3.877 22 C -0.042 4.042 23 C -0.065 4.065 24 C 0.600 3.400 25 N -0.841 5.841 26 O -0.554 6.554 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.187 0.813 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.102 0.898 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.159 0.841 42 H 0.407 0.593 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -2.081 13.768 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.072 5.072 3 C -0.001 4.001 4 C -0.838 4.838 5 S 2.806 3.194 6 O -0.963 6.963 7 O -0.956 6.956 8 N -0.828 5.828 9 C -0.005 4.005 10 C -0.162 4.162 11 C 0.032 3.968 12 C -0.550 4.550 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.162 4.162 21 C -0.002 4.002 22 C -0.068 4.068 23 C -0.177 4.177 24 C 0.386 3.614 25 N -0.405 5.405 26 O -0.433 6.433 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.204 0.796 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.176 0.824 42 H 0.237 0.763 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.265 -1.934 14.363 16.212 hybrid contribution -0.676 -1.107 -1.338 1.863 sum -7.941 -3.040 13.025 15.555 Atomic orbital electron populations 1.22397 0.75380 1.05574 1.04527 1.44134 1.07295 1.05048 1.50678 1.21841 0.88615 0.92136 0.97541 1.31254 1.15524 1.09564 1.27467 1.01069 0.73017 0.72880 0.72462 1.93524 1.83571 1.42224 1.76956 1.93530 1.51847 1.73244 1.76938 1.57581 1.56651 1.38266 1.30350 1.21788 0.91254 0.92296 0.95131 1.22072 1.00420 1.00569 0.93111 1.18579 0.93551 0.92416 0.92219 1.21207 0.97617 1.33535 1.02604 0.92914 1.24942 0.94841 0.96101 0.98008 1.69837 1.07485 1.39701 1.35869 0.86670 0.79416 0.78209 0.84118 1.20741 1.21291 1.20143 1.22002 0.99603 0.99947 0.94671 1.21505 0.97327 0.86745 0.94605 1.20954 0.95068 0.92707 0.98066 1.20060 0.90355 0.87735 1.19564 1.16856 0.85455 0.83833 0.75228 1.43438 1.10399 1.09444 1.77182 1.90827 1.16295 1.85006 1.51189 0.90133 0.89128 0.87724 0.79565 0.91586 0.90924 0.94322 0.88024 0.95398 0.93005 0.93114 0.92357 0.90835 0.91455 0.82389 0.76348 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 10.47 59.85 0.63 1.20 16 2 N -0.40 -4.93 3.16 -120.23 -0.38 -5.31 16 3 C 0.14 1.76 11.11 -16.91 -0.19 1.58 16 4 C -0.75 -10.50 6.17 -39.98 -0.25 -10.74 16 5 S 2.72 42.41 5.84 -107.50 -0.63 41.78 16 6 O -0.97 -16.33 16.56 -57.17 -0.95 -17.28 16 7 O -0.97 -16.89 16.58 -57.17 -0.95 -17.84 16 8 N -0.99 -16.30 3.28 -113.27 -0.37 -16.67 16 9 C 0.12 2.14 6.41 -3.49 -0.02 2.11 16 10 C -0.12 -2.62 5.17 -26.39 -0.14 -2.75 16 11 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 12 C -0.51 -13.27 8.56 -34.44 -0.29 -13.57 16 13 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.11 11.30 55.43 0.63 -23.48 16 16 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.12 -2.31 5.30 -26.60 -0.14 -2.45 16 21 C 0.12 1.98 6.38 -3.70 -0.02 1.96 16 22 C -0.04 -0.56 10.15 -39.12 -0.40 -0.95 16 23 C -0.07 -0.86 6.89 -81.98 -0.56 -1.43 16 24 C 0.60 7.56 8.05 -12.86 -0.10 7.45 16 25 N -0.84 -7.17 8.86 30.26 0.27 -6.91 16 26 O -0.55 -8.35 15.62 5.19 0.08 -8.27 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.10 1.12 6.57 -51.93 -0.34 0.78 16 30 H 0.19 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.18 7.12 -51.93 -0.37 0.81 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 2.45 6.03 -51.93 -0.31 2.14 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.16 1.72 7.45 -52.49 -0.39 1.33 16 42 H 0.41 2.65 7.73 -40.82 -0.32 2.33 16 43 H 0.41 2.72 8.93 -40.82 -0.36 2.35 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -34.15 364.24 -9.42 -43.57 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.81 Total: 4.35 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.78 Total: -15.07 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.14 Total: -52.37 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.81 Total: -43.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 42.41 SS G_CDS: -0.63 Total: 41.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.15 -9.42 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515013845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.530 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds