Wall clock time and date at job start Tue Mar 31 2020 23:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46825 * 2 1 4 4 C 1.34780 * 119.99828 * 274.28325 * 3 2 1 5 5 C 1.50696 * 120.00176 * 5.00035 * 4 3 2 6 6 O 1.21289 * 119.99828 * 184.99610 * 4 3 2 7 7 C 1.39000 * 120.00161 * 94.28206 * 3 2 1 8 8 N 1.29625 * 124.94333 * 179.97438 * 7 3 2 9 9 C 1.31988 * 116.91283 * 180.02562 * 8 7 3 10 10 C 1.50705 * 122.71161 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47299 * 275.02408 * 10 9 8 12 12 C 1.36933 * 120.00581 * 270.00283 * 11 10 9 13 13 H 1.08004 * 119.99725 * 19.28593 * 12 11 10 14 14 C 1.38811 * 120.00279 * 199.29497 * 12 11 10 15 15 N 1.31620 * 120.00197 * 15.45429 * 14 12 11 16 16 Si 1.86800 * 119.99840 * 195.45717 * 14 12 11 17 17 H 1.48506 * 109.47073 * 59.99772 * 16 14 12 18 18 H 1.48502 * 109.47028 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47444 * 299.99751 * 16 14 12 20 20 C 1.46504 * 119.99736 * 90.00146 * 11 10 9 21 21 C 1.50697 * 109.47162 * 84.16620 * 20 11 10 22 22 O 1.20829 * 120.00147 * 359.97438 * 21 20 11 23 23 O 1.34226 * 120.00220 * 179.97438 * 21 20 11 24 24 C 1.45199 * 117.00595 * 180.02562 * 23 21 20 25 25 C 1.33438 * 114.57311 * 0.25182 * 9 8 7 26 26 S 1.70966 * 124.94350 * 0.02895 * 7 3 2 27 27 H 1.09008 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47357 * 299.99400 * 1 2 3 29 29 H 1.08993 * 109.47323 * 60.00304 * 1 2 3 30 30 H 1.09003 * 109.47238 * 240.00331 * 2 1 3 31 31 H 1.09001 * 109.47599 * 119.99672 * 2 1 3 32 32 H 1.09007 * 109.47269 * 84.62486 * 5 4 3 33 33 H 1.09002 * 109.47463 * 204.63083 * 5 4 3 34 34 H 1.09001 * 109.47288 * 324.63316 * 5 4 3 35 35 H 1.09004 * 109.47061 * 155.02432 * 10 9 8 36 36 H 1.09004 * 109.46977 * 35.02970 * 10 9 8 37 37 H 0.96999 * 119.99805 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.47361 * 204.16435 * 20 11 10 39 39 H 1.09005 * 109.47293 * 324.16630 * 20 11 10 40 40 H 1.09000 * 109.46986 * 59.99666 * 24 23 21 41 41 H 1.08998 * 109.47935 * 180.02562 * 24 23 21 42 42 H 1.09009 * 109.46768 * 300.00701 * 24 23 21 43 43 H 1.08004 * 125.97008 * 179.73130 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1607 2.0457 -1.1640 5 6 1.7123 1.4096 -2.4544 6 8 2.6496 3.1556 -1.1728 7 6 2.3347 2.0066 1.2004 8 7 2.7734 3.2213 1.3117 9 6 3.0245 3.6563 2.5323 10 6 3.5389 5.0449 2.8123 11 7 4.9979 5.0608 2.6817 12 6 5.7857 4.7972 3.7702 13 1 5.3713 4.2833 4.6250 14 6 7.1169 5.1906 3.7752 15 7 7.5472 6.0678 2.8933 16 14 8.2976 4.4751 5.0334 17 1 8.3599 3.0002 4.8711 18 1 9.6501 5.0528 4.8278 19 1 7.8217 4.8028 6.4014 20 6 5.6141 5.3588 1.3864 21 6 5.7083 6.8520 1.2065 22 8 5.3019 7.5915 2.0713 23 8 6.2437 7.3606 0.0856 24 6 6.3026 8.8076 -0.0193 25 6 2.7918 2.7651 3.4978 26 16 2.2030 1.2852 2.7448 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.6464 1.5884 -2.5966 33 1 2.2677 1.8437 -3.2858 34 1 1.8983 0.3363 -2.4143 35 1 3.2615 5.3378 3.8249 36 1 3.1025 5.7445 2.0993 37 1 8.4775 6.3424 2.8965 38 1 6.6134 4.9249 1.3510 39 1 5.0052 4.9343 0.5881 40 1 6.9019 9.2070 0.7989 41 1 6.7557 9.0848 -0.9710 42 1 5.2939 9.2172 0.0357 43 1 2.9376 2.9238 4.5561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531383517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:02 Heat of formation + Delta-G solvation = -24.087398 kcal Electronic energy + Delta-G solvation = -28368.304380 eV Core-core repulsion = 24349.958384 eV Total energy + Delta-G solvation = -4018.345996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52081 -38.95959 -38.62512 -36.38315 -35.70019 -34.39149 -31.99460 -30.97718 -30.28752 -29.07338 -27.81521 -26.25280 -25.84347 -24.28262 -23.93593 -22.09734 -20.21962 -19.45686 -18.91115 -17.92846 -16.87416 -16.65210 -16.12491 -16.06286 -15.77525 -15.33939 -15.01462 -14.71517 -14.40286 -14.14535 -14.07444 -13.75040 -13.55963 -13.29408 -13.00010 -12.89055 -12.69048 -12.40971 -12.23200 -12.07940 -12.06706 -11.66455 -11.41623 -11.19143 -10.98741 -10.85116 -10.63719 -10.32839 -10.18665 -10.10994 -10.01058 -9.94202 -9.49729 -9.08117 -8.94876 -8.83817 -8.50578 -7.79268 -6.97808 -5.85015 -3.23635 1.16152 1.35744 2.05080 2.61081 2.64442 3.38332 3.41366 3.44405 3.48707 4.02405 4.18219 4.26384 4.44618 4.51772 4.70559 4.80509 4.93401 5.09435 5.18535 5.28951 5.36957 5.42314 5.55901 5.57421 5.79374 5.81467 5.90328 5.95925 5.97296 6.16753 6.19478 6.49342 6.54473 6.58307 6.74803 6.94730 7.07593 7.21592 7.70651 7.88487 8.03348 8.25001 8.40312 9.07613 9.50076 9.75777 10.19985 11.25303 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004099 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.305254 B = 6829.499001 C = 8397.218699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.529 5.529 4 C 0.500 3.500 5 C -0.168 4.168 6 O -0.468 6.468 7 C 0.263 3.737 8 N -0.458 5.458 9 C 0.095 3.905 10 C 0.216 3.784 11 N -0.554 5.554 12 C -0.255 4.255 13 H 0.078 0.922 14 C 0.004 3.996 15 N -0.906 5.906 16 Si 0.914 3.086 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.192 3.808 21 C 0.472 3.528 22 O -0.512 6.512 23 O -0.381 6.381 24 C 0.043 3.957 25 C -0.257 4.257 26 S 0.070 5.930 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.258 0.742 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.546 -13.843 -8.268 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.261 5.261 4 C 0.285 3.715 5 C -0.228 4.228 6 O -0.335 6.335 7 C -0.105 4.105 8 N -0.179 5.179 9 C -0.038 4.038 10 C 0.085 3.915 11 N -0.272 5.272 12 C -0.384 4.384 13 H 0.096 0.904 14 C -0.194 4.194 15 N -0.550 5.550 16 Si 0.744 3.256 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.063 3.937 21 C 0.313 3.687 22 O -0.397 6.397 23 O -0.299 6.299 24 C -0.052 4.052 25 C -0.397 4.397 26 S 0.319 5.681 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.442 -13.540 -8.215 20.773 hybrid contribution 1.152 0.684 0.996 1.669 sum -12.290 -12.856 -7.219 19.195 Atomic orbital electron populations 1.22252 0.94578 1.03053 1.03386 1.21881 0.95536 0.80360 1.04561 1.45337 1.63678 1.14200 1.02917 1.21110 0.79202 0.86456 0.84682 1.22015 1.03957 1.02195 0.94642 1.90900 1.38525 1.18508 1.85593 1.23701 1.02732 0.93054 0.91013 1.66417 1.15981 1.10411 1.25062 1.21637 0.96106 1.01184 0.84873 1.19390 0.85074 0.86690 1.00336 1.43719 0.99054 1.77853 1.06543 1.19210 0.91741 1.31022 0.96439 0.90450 1.24895 0.98410 0.97257 0.98814 1.69764 1.15788 1.31340 1.38158 0.86187 0.80089 0.78611 0.80748 1.21038 1.21620 1.20904 1.20246 1.00663 0.86011 0.86781 1.25397 0.71708 0.94135 0.77464 1.90440 1.46639 1.61272 1.41372 1.86547 1.76652 1.22788 1.43887 1.22840 1.00833 0.80293 1.01238 1.26616 1.14258 0.94098 1.04727 1.83412 1.66096 1.19456 0.99125 0.90564 0.91685 0.91770 0.88496 0.89460 0.88685 0.88495 0.89776 0.90912 0.92309 0.93162 0.87087 0.92207 0.92950 0.90208 0.93660 0.80743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.16 37.16 0.38 -0.64 16 2 C 0.10 0.74 5.61 -4.04 -0.02 0.72 16 3 N -0.53 -6.86 2.68 -117.39 -0.31 -7.17 16 4 C 0.50 6.96 7.71 -10.99 -0.08 6.87 16 5 C -0.17 -1.29 9.17 36.00 0.33 -0.96 16 6 O -0.47 -9.21 15.75 5.55 0.09 -9.12 16 7 C 0.26 4.36 7.67 -87.35 -0.67 3.69 16 8 N -0.46 -9.39 8.65 -11.28 -0.10 -9.49 16 9 C 0.10 1.93 6.32 -84.20 -0.53 1.40 16 10 C 0.22 4.88 6.08 -5.19 -0.03 4.84 16 11 N -0.55 -14.38 2.01 -175.98 -0.35 -14.73 16 12 C -0.26 -6.96 9.68 -15.06 -0.15 -7.11 16 13 H 0.08 2.02 7.88 -52.48 -0.41 1.60 16 14 C 0.00 0.12 5.01 -17.43 -0.09 0.03 16 15 N -0.91 -26.49 8.97 55.49 0.50 -25.99 16 16 Si 0.91 22.00 29.58 -169.99 -5.03 16.97 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.19 5.04 5.48 -5.19 -0.03 5.01 16 21 C 0.47 12.63 6.09 36.00 0.22 12.85 16 22 O -0.51 -14.91 15.84 -18.75 -0.30 -15.21 16 23 O -0.38 -9.19 10.56 -39.25 -0.41 -9.60 16 24 C 0.04 0.84 10.56 101.05 1.07 1.91 16 25 C -0.26 -4.43 11.09 29.05 0.32 -4.11 16 26 S 0.07 0.98 21.62 -107.50 -2.32 -1.35 16 27 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.35 7.21 -51.93 -0.37 -0.02 16 30 H 0.10 0.46 6.14 -51.93 -0.32 0.14 16 31 H 0.09 0.64 6.89 -51.93 -0.36 0.28 16 32 H 0.09 0.56 7.72 -51.92 -0.40 0.16 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.40 6.08 -51.93 -0.32 0.08 16 35 H 0.07 1.56 8.00 -51.93 -0.42 1.15 16 36 H 0.06 1.37 8.07 -51.93 -0.42 0.96 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.11 3.10 6.38 -51.93 -0.33 2.77 16 39 H 0.06 1.53 8.12 -51.93 -0.42 1.11 16 40 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.04 0.84 8.13 -51.92 -0.42 0.42 16 43 H 0.18 2.72 8.06 -52.48 -0.42 2.30 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -37.43 375.31 -7.74 -45.17 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.86 Total: 0.37 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 0.71 Total: 24.50 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.27 Total: -57.38 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.62 Total: -33.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.32 Total: -1.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.43 -7.74 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531383517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.078 kcal (2) G-P(sol) polarization free energy of solvation -37.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds