Wall clock time and date at job start Tue Mar 31 2020 23:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47293 * 2 1 4 4 C 1.46502 * 120.00009 * 275.00237 * 3 2 1 5 5 C 1.53001 * 109.46841 * 275.00083 * 4 3 2 6 6 S 1.65592 * 120.00174 * 95.00002 * 3 2 1 7 7 O 1.42103 * 104.27691 * 333.93038 * 6 3 2 8 8 O 1.42094 * 104.28025 * 206.07598 * 6 3 2 9 9 C 1.81402 * 104.45187 * 89.99900 * 6 3 2 10 10 C 1.50692 * 109.47245 * 180.02562 * 9 6 3 11 11 O 1.21276 * 120.00154 * 0.02562 * 10 9 6 12 12 N 1.34775 * 119.99819 * 180.02562 * 10 9 6 13 13 C 1.39475 * 119.99848 * 185.07801 * 12 10 9 14 14 C 1.38601 * 119.57903 * 185.36092 * 13 12 10 15 15 C 1.40804 * 118.79476 * 179.70082 * 14 13 12 16 16 C 1.41544 * 120.99563 * 180.25643 * 15 14 13 17 17 H 1.07997 * 120.00059 * 153.76040 * 16 15 14 18 18 C 1.40038 * 120.00047 * 333.75311 * 16 15 14 19 19 N 1.30743 * 119.99889 * 350.16358 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 170.15590 * 18 16 15 21 21 H 1.48496 * 109.46948 * 90.00321 * 20 18 16 22 22 H 1.48499 * 109.47008 * 210.00542 * 20 18 16 23 23 H 1.48502 * 109.46960 * 330.00361 * 20 18 16 24 24 C 1.41178 * 118.00892 * 0.28298 * 15 14 13 25 25 C 1.37585 * 119.01231 * 359.97438 * 24 15 14 26 26 N 1.32077 * 121.11109 * 0.02562 * 25 24 15 27 27 H 1.09001 * 109.47133 * 299.99779 * 1 2 3 28 28 H 1.09006 * 109.47324 * 60.00027 * 1 2 3 29 29 H 1.08998 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47064 * 239.99675 * 2 1 3 31 31 H 1.08996 * 109.47064 * 120.00439 * 2 1 3 32 32 H 1.09006 * 109.46866 * 34.99440 * 4 3 2 33 33 H 1.08992 * 109.47362 * 154.99842 * 4 3 2 34 34 H 1.08997 * 109.47584 * 60.00154 * 5 4 3 35 35 H 1.09005 * 109.47275 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47326 * 299.99858 * 5 4 3 37 37 H 1.09000 * 109.46633 * 59.99597 * 9 6 3 38 38 H 1.09002 * 109.47131 * 300.00783 * 9 6 3 39 39 H 0.97002 * 120.00068 * 5.07889 * 12 10 9 40 40 H 1.08002 * 120.59791 * 359.97438 * 14 13 12 41 41 H 0.96997 * 119.99660 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.49233 * 179.97438 * 24 15 14 43 43 H 1.08005 * 119.44490 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.5151 1.7838 -1.8918 6 16 2.4122 2.1202 1.4286 7 8 1.6208 1.4496 2.3999 8 8 2.2333 3.5055 1.1676 9 6 4.1697 1.7388 1.6661 10 6 4.6505 2.3644 2.9499 11 8 3.8830 3.0041 3.6374 12 7 5.9334 2.2130 3.3343 13 6 6.3528 2.7005 4.5719 14 6 7.6951 2.6405 4.9117 15 6 8.1012 3.1432 6.1626 16 6 9.4608 3.1103 6.5549 17 1 9.8354 3.8320 7.2657 18 6 10.3202 2.1418 6.0215 19 7 9.8345 1.1545 5.3154 20 14 12.1606 2.2607 6.3188 21 1 12.5095 1.5275 7.5622 22 1 12.8872 1.6618 5.1705 23 1 12.5481 3.6873 6.4601 24 6 7.1117 3.6806 7.0142 25 6 5.8023 3.6921 6.5916 26 7 5.4624 3.2104 5.4098 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3617 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 3.5812 0.7123 -2.0801 35 1 3.6191 2.3248 -2.8324 36 1 4.3117 2.0828 -1.2104 37 1 4.7441 2.1373 0.8298 38 1 4.3035 0.6582 1.7164 39 1 6.5650 1.7649 2.7501 40 1 8.4171 2.2198 4.2274 41 1 10.4298 0.4835 4.9462 42 1 7.3785 4.0768 7.9828 43 1 5.0397 4.1019 7.2373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:52 Heat of formation + Delta-G solvation = -66.461342 kcal Electronic energy + Delta-G solvation = -27593.719558 eV Core-core repulsion = 23573.536090 eV Total energy + Delta-G solvation = -4020.183468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82493 -37.95789 -37.46333 -37.17472 -35.86286 -34.52024 -33.88865 -32.26822 -30.91427 -30.44606 -29.08666 -28.23666 -26.07514 -24.03637 -22.61103 -22.16345 -21.84547 -20.00637 -18.84616 -18.04122 -17.82688 -17.13999 -16.73997 -16.36810 -15.70350 -15.59195 -15.23656 -14.72272 -14.41989 -14.27044 -14.13923 -14.06284 -13.72709 -13.69412 -13.19952 -13.04373 -12.91098 -12.65775 -12.42279 -12.23012 -12.08589 -12.03289 -11.99486 -11.91773 -11.51004 -11.28503 -11.23293 -11.18506 -10.98566 -10.94826 -10.41572 -10.24719 -9.96563 -9.81886 -9.47846 -9.40626 -8.07462 -7.85433 -7.17015 -6.83239 -4.70017 0.07456 2.30927 2.52908 2.73102 2.96888 3.01289 3.04805 3.24713 3.27534 3.80062 3.85253 4.05933 4.30483 4.57609 4.60336 4.70090 4.77147 4.82591 4.97943 5.03546 5.05054 5.13386 5.24720 5.42672 5.54997 5.59026 5.61938 5.81171 5.86985 5.90461 6.03047 6.32551 6.45566 6.50506 6.71966 6.85398 7.04562 7.26493 7.35263 7.56456 7.82362 8.07565 8.27239 8.52190 8.66287 8.69595 9.57682 10.02423 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.002609 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.219976 B =10729.395612 C =11469.948777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -1.003 6.003 4 C 0.106 3.894 5 C -0.179 4.179 6 S 2.642 3.358 7 O -0.934 6.934 8 O -0.938 6.938 9 C -0.676 4.676 10 C 0.528 3.472 11 O -0.479 6.479 12 N -0.644 5.644 13 C 0.328 3.672 14 C -0.234 4.234 15 C 0.141 3.859 16 C -0.452 4.452 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.916 3.084 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.278 4.278 25 C 0.119 3.881 26 N -0.554 5.554 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.412 0.588 40 H 0.135 0.865 41 H 0.281 0.719 42 H 0.105 0.895 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -5.364 -16.411 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.841 5.841 4 C -0.019 4.019 5 C -0.238 4.238 6 S 2.730 3.270 7 O -0.924 6.924 8 O -0.928 6.928 9 C -0.804 4.804 10 C 0.310 3.690 11 O -0.350 6.350 12 N -0.289 5.289 13 C 0.104 3.896 14 C -0.259 4.259 15 C 0.132 3.868 16 C -0.483 4.483 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.740 3.260 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.302 4.302 25 C -0.035 4.035 26 N -0.272 5.272 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.248 0.752 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.319 -4.635 -15.799 19.431 hybrid contribution 2.916 -0.888 -0.277 3.061 sum -7.403 -5.522 -16.076 18.540 Atomic orbital electron populations 1.22204 0.95650 1.02445 1.02953 1.21246 0.95112 0.81196 1.03070 1.57902 1.79414 1.24139 1.22667 1.21405 0.97893 0.97684 0.84925 1.22316 0.97368 1.02563 1.01527 1.04375 0.75845 0.74172 0.72584 1.93588 1.64046 1.75774 1.58995 1.93563 1.84291 1.31129 1.83848 1.31289 1.30500 1.12697 1.05944 1.19160 0.83676 0.81274 0.84852 1.90924 1.53309 1.37563 1.53249 1.43227 1.10068 1.57413 1.18205 1.18179 0.90063 0.96137 0.85240 1.21666 0.92378 1.12113 0.99761 1.17599 0.93076 0.86961 0.89129 1.19591 0.93068 1.13099 1.22584 0.89927 1.25967 1.01644 0.93837 0.92879 1.69732 1.37479 1.08884 1.26112 0.86183 0.81122 0.79861 0.78835 1.19336 1.20056 1.18388 1.21961 0.93896 1.13285 1.01023 1.21780 0.94307 0.95871 0.91520 1.67139 1.36415 1.18685 1.05009 0.91429 0.92387 0.91472 0.90365 0.89994 0.89835 0.88573 0.91921 0.91022 0.92620 0.82723 0.82573 0.75235 0.84791 0.90770 0.87718 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 0.90 5.98 -4.04 -0.02 0.87 16 3 N -1.00 -9.37 2.71 -114.38 -0.31 -9.68 16 4 C 0.11 0.78 6.38 -4.04 -0.03 0.76 16 5 C -0.18 -1.02 10.24 37.16 0.38 -0.64 16 6 S 2.64 37.44 4.51 -107.50 -0.48 36.96 16 7 O -0.93 -16.29 16.75 -57.55 -0.96 -17.25 16 8 O -0.94 -16.24 16.53 -57.55 -0.95 -17.19 16 9 C -0.68 -8.25 6.66 36.00 0.24 -8.01 16 10 C 0.53 10.06 7.80 -10.99 -0.09 9.97 16 11 O -0.48 -11.38 14.16 5.56 0.08 -11.30 16 12 N -0.64 -12.47 5.39 -11.49 -0.06 -12.53 16 13 C 0.33 7.95 7.40 -154.70 -1.15 6.81 16 14 C -0.23 -5.84 8.61 -38.48 -0.33 -6.17 16 15 C 0.14 3.66 5.60 -106.55 -0.60 3.06 16 16 C -0.45 -11.41 9.14 -37.65 -0.34 -11.75 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 18 C 0.07 1.76 5.31 -17.34 -0.09 1.67 16 19 N -0.80 -19.08 10.70 55.55 0.59 -18.48 16 20 Si 0.92 17.58 29.57 -169.99 -5.03 12.56 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 24 C -0.28 -6.77 9.90 -38.70 -0.38 -7.16 16 25 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 26 N -0.55 -14.33 7.89 -12.52 -0.10 -14.43 16 27 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 31 H 0.08 0.61 7.61 -51.93 -0.40 0.22 16 32 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.10 0.83 6.82 -51.93 -0.35 0.47 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.32 6.96 -51.93 -0.36 -0.04 16 37 H 0.15 1.31 6.96 -51.92 -0.36 0.95 16 38 H 0.16 1.35 8.14 -51.92 -0.42 0.93 16 39 H 0.41 6.25 8.70 -40.82 -0.36 5.90 16 40 H 0.13 3.28 6.11 -52.49 -0.32 2.96 16 41 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 42 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.13 2.67 8.06 -52.48 -0.42 2.25 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -36.03 374.18 -9.72 -45.75 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.91 Total: 8.85 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.23 Total: -8.89 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.12 Total: -55.13 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.84 Total: -45.74 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 16 Polarization: 37.44 SS G_CDS: -0.48 Total: 36.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.03 -9.72 -45.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.713 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds