Wall clock time and date at job start Tue Mar 31 2020 22:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.69273 * 2 1 4 4 C 1.53257 * 109.58212 * 120.34237 * 2 1 3 5 5 C 1.53144 * 109.49685 * 170.16144 * 4 2 1 6 6 C 1.53402 * 109.23928 * 290.51458 * 5 4 2 7 7 C 1.51044 * 108.20582 * 48.82659 * 6 5 4 8 8 N 1.30098 * 127.38844 * 164.30432 * 7 6 5 9 9 C 1.34288 * 109.21061 * 180.27263 * 8 7 6 10 10 S 1.76198 * 125.96246 * 179.79193 * 9 8 7 11 11 O 1.42109 * 106.39790 * 156.15836 * 10 9 8 12 12 O 1.42097 * 106.40447 * 23.23737 * 10 9 8 13 13 N 1.65599 * 107.21818 * 269.69432 * 10 9 8 14 14 C 1.47582 * 134.48992 * 90.00665 * 13 10 9 15 15 C 1.53947 * 86.11407 * 155.35504 * 14 13 10 16 16 O 1.42902 * 113.74162 * 269.15079 * 15 14 13 17 17 C 1.50708 * 113.74049 * 137.95124 * 15 14 13 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 15 14 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 15 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.47580 * 134.49386 * 269.99630 * 13 10 9 26 26 C 1.34857 * 108.07196 * 359.53912 * 9 8 7 27 27 N 1.35416 * 123.98352 * 344.05021 * 7 6 5 28 28 H 1.09000 * 109.47096 * 180.34124 * 1 2 3 29 29 H 1.09000 * 109.47121 * 300.34346 * 1 2 3 30 30 H 1.09001 * 109.46826 * 60.34905 * 1 2 3 31 31 H 1.09004 * 109.47003 * 290.17283 * 4 2 1 32 32 H 1.08998 * 109.46654 * 50.15895 * 4 2 1 33 33 H 1.08998 * 109.51116 * 50.44374 * 5 4 2 34 34 H 1.09001 * 109.51263 * 170.58474 * 5 4 2 35 35 H 1.08999 * 109.71967 * 168.50670 * 6 5 4 36 36 H 1.08998 * 109.71395 * 289.10777 * 6 5 4 37 37 H 1.08997 * 113.76939 * 41.05570 * 14 13 10 38 38 H 1.08998 * 113.86978 * 269.66882 * 14 13 10 39 39 H 0.96700 * 113.99835 * 178.07757 * 16 15 14 40 40 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 41 41 H 1.08998 * 113.76926 * 90.34333 * 25 13 10 42 42 H 1.09000 * 113.77577 * 318.94812 * 25 13 10 43 43 H 1.07999 * 126.65589 * 180.25135 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0437 -0.7294 1.2461 5 6 3.5551 -0.9448 1.1257 6 6 3.8325 -1.9775 0.0259 7 6 3.0448 -1.5834 -1.2011 8 7 3.2090 -2.0146 -2.4175 9 6 2.3140 -1.4189 -3.2221 10 16 2.1496 -1.6770 -4.9573 11 8 0.8126 -1.3286 -5.2899 12 8 2.7101 -2.9545 -5.2279 13 7 3.1228 -0.5700 -5.7120 14 6 4.5298 -0.5634 -6.1574 15 6 4.0937 0.5074 -7.1738 16 8 3.6776 -0.0287 -8.4314 17 6 5.0727 1.6445 -7.3149 18 1 5.9802 1.6513 -6.7296 19 6 4.8101 2.6754 -8.1919 20 7 5.6646 3.6675 -8.3154 21 14 3.2405 2.6631 -9.2047 22 1 3.4868 1.9628 -10.4910 23 1 2.8150 4.0599 -9.4753 24 1 2.1720 1.9568 -8.4533 25 6 2.9315 0.8062 -6.2096 26 6 1.5594 -0.5927 -2.4693 27 7 2.0209 -0.6972 -1.1909 28 1 -0.3633 -1.0276 0.0061 29 1 -0.3633 0.5192 0.8869 30 1 -0.3633 0.5084 -0.8931 31 1 1.8316 -0.1298 2.1314 32 1 1.5451 -1.6948 1.3333 33 1 4.0379 -0.0017 0.8696 34 1 3.9477 -1.3095 2.0749 35 1 4.8970 -1.9885 -0.2083 36 1 3.5199 -2.9660 0.3624 37 1 4.8501 -1.4993 -6.6153 38 1 5.2287 -0.1968 -5.4055 39 1 3.3750 0.6384 -9.0626 40 1 5.4796 4.3929 -8.9322 41 1 3.1593 1.5757 -5.4720 42 1 1.9756 0.9639 -6.7092 43 1 0.7470 0.0305 -2.8126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578766625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:25 Heat of formation + Delta-G solvation = -16.665218 kcal Electronic energy + Delta-G solvation = -28494.487241 eV Core-core repulsion = 24476.463095 eV Total energy + Delta-G solvation = -4018.024146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63017 -38.82288 -37.43750 -36.68168 -35.34711 -34.40763 -34.21170 -32.47348 -31.03820 -29.53661 -28.04996 -27.37189 -25.55672 -24.56622 -23.62593 -22.72235 -21.78078 -19.79901 -19.48253 -18.42807 -17.70670 -17.42514 -16.79094 -16.50141 -16.27125 -15.78032 -15.31979 -15.07439 -14.68870 -14.32731 -14.09070 -13.94347 -13.84979 -13.69713 -13.45855 -13.10232 -13.00063 -12.87048 -12.52643 -12.21068 -12.11225 -11.72207 -11.67524 -11.61506 -11.59125 -11.57013 -11.32900 -11.18495 -11.02667 -10.86409 -10.45943 -10.14094 -10.05325 -9.96894 -9.27448 -9.00035 -8.84832 -8.69472 -8.26298 -6.36351 -4.41320 0.82547 1.59100 2.37958 2.57210 3.06611 3.11749 3.21175 3.51835 3.81737 3.98185 4.09984 4.11801 4.14208 4.28309 4.46485 4.59225 4.61815 4.74555 4.78453 4.85737 4.99354 5.09829 5.11579 5.19216 5.21885 5.33464 5.37309 5.48914 5.51526 5.66753 5.75956 5.80738 5.94087 6.19447 6.21965 6.27657 6.45282 6.58768 6.66722 6.88738 7.17560 7.40380 7.74458 8.10019 8.61102 8.67608 9.22227 10.75832 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.003462 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.517903 B = 8086.028039 C = 8484.300486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 H 0.098 0.902 4 C -0.131 4.131 5 C -0.127 4.127 6 C -0.034 4.034 7 C 0.204 3.796 8 N -0.407 5.407 9 C -0.559 4.559 10 S 2.732 3.268 11 O -0.964 6.964 12 O -0.948 6.948 13 N -1.023 6.023 14 C 0.150 3.850 15 C 0.201 3.799 16 O -0.551 6.551 17 C -0.533 4.533 18 H 0.091 0.909 19 C 0.080 3.920 20 N -0.879 5.879 21 Si 0.854 3.146 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.253 1.253 25 C 0.089 3.911 26 C 0.068 3.932 27 N -0.447 5.447 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.351 0.649 40 H 0.270 0.730 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 -4.353 21.011 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 H 0.116 0.884 4 C -0.168 4.168 5 C -0.165 4.165 6 C -0.073 4.073 7 C -0.062 4.062 8 N -0.124 5.124 9 C -0.768 4.768 10 S 2.820 3.180 11 O -0.954 6.954 12 O -0.939 6.939 13 N -0.864 5.864 14 C 0.025 3.975 15 C 0.157 3.843 16 O -0.362 6.362 17 C -0.571 4.571 18 H 0.109 0.891 19 C -0.125 4.125 20 N -0.515 5.515 21 Si 0.683 3.317 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.178 1.178 25 C -0.037 4.037 26 C -0.073 4.073 27 N -0.128 5.128 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.203 0.797 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.411 -6.027 20.851 23.277 hybrid contribution -1.474 1.737 0.198 2.287 sum -9.885 -4.291 21.049 23.647 Atomic orbital electron populations 1.22189 0.92532 1.03746 1.03890 1.21770 0.96003 0.96906 0.83220 0.88411 1.21994 0.96760 1.01800 0.96282 1.21712 0.95454 1.00000 0.99332 1.20238 0.99761 0.99518 0.87737 1.23685 0.92449 0.93911 0.96138 1.70119 1.20951 1.22196 0.99142 1.34020 1.06290 1.11032 1.25445 1.00920 0.72754 0.72922 0.71390 1.93542 1.34585 1.84714 1.82541 1.93526 1.78966 1.37849 1.83509 1.60187 1.25355 1.29298 1.71527 1.22892 0.80408 0.99841 0.94360 1.20581 0.90578 0.91997 0.81119 1.86475 1.86628 1.37830 1.25300 1.21298 1.07066 1.03297 1.25488 0.89062 1.24995 0.96317 0.95135 0.96072 1.69861 1.35324 1.10195 1.36120 0.87398 0.84481 0.77977 0.81871 1.19173 1.21107 1.17817 1.24153 1.01763 0.80703 0.97077 1.22450 1.00606 1.01025 0.83204 1.45822 1.26167 1.33118 1.07739 0.91348 0.89901 0.91158 0.89036 0.90396 0.90845 0.89608 0.88190 0.89042 0.90043 0.89108 0.79722 0.91998 0.89315 0.90898 0.79283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.02 37.16 0.34 -0.64 16 2 C 0.12 0.90 3.62 -67.81 -0.25 0.65 16 3 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -0.68 5.25 -26.52 -0.14 -0.82 16 5 C -0.13 -0.73 5.96 -26.45 -0.16 -0.89 16 6 C -0.03 -0.30 6.33 -27.51 -0.17 -0.47 16 7 C 0.20 2.75 7.65 -155.24 -1.19 1.57 16 8 N -0.41 -7.17 11.24 -9.83 -0.11 -7.28 16 9 C -0.56 -9.79 7.14 -17.68 -0.13 -9.91 16 10 S 2.73 54.37 6.39 -107.50 -0.69 53.68 16 11 O -0.96 -19.97 17.81 -57.17 -1.02 -20.99 16 12 O -0.95 -21.45 17.99 -57.17 -1.03 -22.48 16 13 N -1.02 -20.97 4.11 -118.73 -0.49 -21.46 16 14 C 0.15 3.14 8.36 -2.97 -0.02 3.12 16 15 C 0.20 4.70 1.06 -90.84 -0.10 4.60 16 16 O -0.55 -13.39 13.32 -35.23 -0.47 -13.86 16 17 C -0.53 -13.88 9.20 -34.44 -0.32 -14.19 16 18 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 19 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.88 -24.73 13.96 55.43 0.77 -23.96 16 21 Si 0.85 19.26 24.34 -169.99 -4.14 15.12 16 22 H -0.27 -5.84 7.06 56.52 0.40 -5.44 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.25 -5.40 5.28 56.52 0.30 -5.10 16 25 C 0.09 1.86 7.56 -2.98 -0.02 1.84 16 26 C 0.07 0.97 10.58 -16.76 -0.18 0.79 16 27 N -0.45 -5.30 2.98 -106.69 -0.32 -5.62 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.44 7.54 -51.93 -0.39 0.05 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 39 H 0.35 8.11 3.31 45.56 0.15 8.26 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 42 H 0.07 1.50 6.99 -51.93 -0.36 1.13 16 43 H 0.19 2.17 7.71 -52.49 -0.40 1.77 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -35.56 358.24 -10.25 -45.81 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.74 Total: 7.99 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.43 Total: -12.34 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.14 Total: -58.32 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -2.52 Total: -57.33 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.14 Total: 15.12 kcal Atomic # 16 Polarization: 54.37 SS G_CDS: -0.69 Total: 53.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.56 -10.25 -45.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578766625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.143 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds