Wall clock time and date at job start Tue Mar 31 2020 22:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.58172 * 2 1 4 4 C 1.53258 * 109.69792 * 239.65167 * 2 1 3 5 5 C 1.53153 * 109.49116 * 189.75107 * 4 2 1 6 6 C 1.53403 * 109.23494 * 69.49442 * 5 4 2 7 7 C 1.51042 * 108.21472 * 311.18437 * 6 5 4 8 8 N 1.30091 * 127.39274 * 195.97343 * 7 6 5 9 9 C 1.34289 * 109.21125 * 179.89027 * 8 7 6 10 10 S 1.76200 * 125.96384 * 180.02562 * 9 8 7 11 11 O 1.42096 * 106.40250 * 83.56658 * 10 9 8 12 12 O 1.42105 * 106.40367 * 216.48404 * 10 9 8 13 13 N 1.65601 * 107.21816 * 330.02350 * 10 9 8 14 14 C 1.47057 * 136.05767 * 269.63104 * 13 10 9 15 15 C 1.53757 * 87.89063 * 152.96207 * 14 13 10 16 16 O 1.42899 * 114.39676 * 272.67865 * 15 14 13 17 17 C 1.50694 * 114.09106 * 139.77802 * 15 14 13 18 18 H 1.08000 * 120.00263 * 266.56359 * 17 15 14 19 19 C 1.37879 * 120.00219 * 86.56219 * 17 15 14 20 20 N 1.31510 * 120.00368 * 180.02562 * 19 17 15 21 21 Si 1.86799 * 119.99751 * 0.02562 * 19 17 15 22 22 H 1.48493 * 109.47115 * 89.99930 * 21 19 17 23 23 H 1.48501 * 109.47138 * 210.00000 * 21 19 17 24 24 H 1.48505 * 109.47170 * 329.99610 * 21 19 17 25 25 C 1.47069 * 136.05365 * 89.99623 * 13 10 9 26 26 C 1.34855 * 108.07400 * 0.25719 * 9 8 7 27 27 N 1.35427 * 123.97900 * 15.92956 * 7 6 5 28 28 H 1.08990 * 109.47229 * 299.72427 * 1 2 3 29 29 H 1.08995 * 109.46626 * 59.72629 * 1 2 3 30 30 H 1.09008 * 109.46959 * 179.72615 * 1 2 3 31 31 H 1.09000 * 109.47201 * 309.75799 * 4 2 1 32 32 H 1.09002 * 109.46937 * 69.75267 * 4 2 1 33 33 H 1.09001 * 109.51064 * 189.41769 * 5 4 2 34 34 H 1.08998 * 109.51717 * 309.56853 * 5 4 2 35 35 H 1.09008 * 109.71454 * 70.86006 * 6 5 4 36 36 H 1.08998 * 109.71796 * 191.45681 * 6 5 4 37 37 H 1.09006 * 113.47035 * 267.69394 * 14 13 10 38 38 H 1.08998 * 113.47321 * 38.13595 * 14 13 10 39 39 H 0.96701 * 113.99677 * 273.58580 * 16 15 14 40 40 H 0.96998 * 120.00270 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.47285 * 321.86706 * 25 13 10 42 42 H 1.09006 * 113.46408 * 92.31128 * 25 13 10 43 43 H 1.08004 * 126.65790 * 179.81484 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7290 -1.2452 5 6 3.5585 -0.9408 -1.1229 6 6 3.8369 -1.9724 -0.0223 7 6 3.0468 -1.5798 1.2036 8 7 3.2137 -2.0064 2.4212 9 6 2.3126 -1.4168 3.2235 10 16 2.1459 -1.6754 4.9584 11 8 3.0943 -0.8223 5.5842 12 8 0.7536 -1.6280 5.2393 13 7 2.6336 -3.2266 5.2719 14 6 1.9885 -4.5465 5.3378 15 6 3.3458 -5.1654 4.9653 16 8 3.5852 -5.2607 3.5597 17 6 3.6713 -6.4313 5.7153 18 1 4.2498 -6.3857 6.6262 19 6 3.2306 -7.6477 5.2387 20 7 3.5142 -8.7524 5.8935 21 14 2.2306 -7.7266 3.6629 22 1 3.1452 -7.8843 2.5037 23 1 1.3030 -8.8847 3.7227 24 1 1.4486 -6.4735 3.5096 25 6 3.9013 -3.8895 5.6132 26 6 1.5542 -0.5960 2.4687 27 7 2.0209 -0.6958 1.1918 28 1 -0.3633 0.5095 0.8924 29 1 -0.3632 0.5181 -0.8875 30 1 -0.3633 -1.0277 -0.0049 31 1 1.5503 -1.6956 -1.3324 32 1 1.8342 -0.1304 -2.1310 33 1 3.9529 -1.3052 -2.0715 34 1 4.0389 0.0034 -0.8667 35 1 3.5265 -2.9618 -0.3585 36 1 4.9012 -1.9813 0.2127 37 1 1.6494 -4.8144 6.3386 38 1 1.2202 -4.6927 4.5787 39 1 3.2341 -6.0655 3.1547 40 1 3.2038 -9.6081 5.5584 41 1 4.7625 -3.4758 5.0886 42 1 4.0664 -3.9841 6.6865 43 1 0.7372 0.0225 2.8100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578766626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:28 Heat of formation + Delta-G solvation = -9.857994 kcal Electronic energy + Delta-G solvation = -28963.445916 eV Core-core repulsion = 24945.716953 eV Total energy + Delta-G solvation = -4017.728962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53458 -38.84347 -37.36324 -36.71487 -35.46229 -34.36292 -34.12078 -32.40340 -30.96424 -29.47280 -28.03536 -27.29846 -25.22399 -24.57422 -23.58658 -22.63654 -21.72261 -19.77540 -19.39197 -18.38130 -17.81111 -17.23347 -16.59262 -16.45539 -16.17782 -15.89714 -15.26863 -14.99412 -14.70824 -14.21051 -14.02317 -13.88069 -13.84096 -13.59252 -13.41377 -13.05390 -12.92921 -12.80318 -12.45639 -12.11140 -12.05509 -11.77953 -11.73792 -11.65249 -11.56107 -11.49807 -11.30129 -11.17909 -10.84858 -10.81565 -10.37094 -10.00802 -9.95695 -9.85511 -9.14834 -8.95861 -8.70916 -8.58206 -8.16920 -6.30847 -4.34301 0.84749 1.66004 2.45571 2.75972 3.07868 3.15178 3.23069 3.32584 3.89701 4.05351 4.14141 4.16396 4.21699 4.27604 4.51993 4.64163 4.76013 4.79361 4.87283 4.90982 5.02945 5.13681 5.19999 5.23064 5.28501 5.37978 5.45545 5.54129 5.64395 5.75951 5.85838 5.97005 6.05591 6.28288 6.32417 6.39549 6.55698 6.68473 6.79206 6.96277 7.22595 7.53676 7.87611 8.15527 8.72517 8.74907 9.28552 10.81676 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004430 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.328897 B = 6318.812877 C = 7511.114576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 H 0.095 0.905 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.034 4.034 7 C 0.205 3.795 8 N -0.388 5.388 9 C -0.548 4.548 10 S 2.752 3.248 11 O -0.962 6.962 12 O -0.967 6.967 13 N -1.030 6.030 14 C 0.096 3.904 15 C 0.196 3.804 16 O -0.538 6.538 17 C -0.529 4.529 18 H 0.092 0.908 19 C 0.079 3.921 20 N -0.880 5.880 21 Si 0.859 3.141 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.257 1.257 25 C 0.153 3.847 26 C 0.057 3.943 27 N -0.448 5.448 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.345 0.655 40 H 0.269 0.731 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 16.486 -16.100 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.022 3.978 3 H 0.113 0.887 4 C -0.169 4.169 5 C -0.164 4.164 6 C -0.073 4.073 7 C -0.061 4.061 8 N -0.104 5.104 9 C -0.759 4.759 10 S 2.840 3.160 11 O -0.952 6.952 12 O -0.957 6.957 13 N -0.871 5.871 14 C -0.029 4.029 15 C 0.153 3.847 16 O -0.348 6.348 17 C -0.567 4.567 18 H 0.110 0.890 19 C -0.125 4.125 20 N -0.517 5.517 21 Si 0.688 3.312 22 H -0.195 1.195 23 H -0.214 1.214 24 H -0.182 1.182 25 C 0.028 3.972 26 C -0.084 4.084 27 N -0.129 5.129 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.196 0.804 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.344 17.227 -15.327 23.464 hybrid contribution -1.531 -0.159 -1.910 2.453 sum -5.874 17.068 -17.236 24.958 Atomic orbital electron populations 1.22188 0.92634 1.03881 1.03650 1.21732 0.95919 0.96714 0.83388 0.88700 1.21994 0.96853 1.01890 0.96148 1.21708 0.95333 0.99875 0.99460 1.20233 0.99775 0.99596 0.87668 1.23693 0.92281 0.93874 0.96212 1.70272 1.20374 1.20777 0.99020 1.33706 1.06095 1.10858 1.25263 1.00052 0.72628 0.71102 0.72211 1.93549 1.63589 1.64628 1.73454 1.93548 1.32155 1.86393 1.83619 1.59320 1.22551 1.21580 1.83676 1.23925 0.99554 0.77990 1.01471 1.20423 0.90572 0.93831 0.79883 1.86551 1.81587 1.44191 1.22457 1.21274 1.35809 0.88576 1.11090 0.88987 1.24982 0.95044 0.95729 0.96759 1.69858 1.44612 0.98206 1.38976 0.87333 0.81117 0.78390 0.84375 1.19509 1.21387 1.18187 1.22617 0.85290 0.89637 0.99637 1.22226 1.00542 1.02116 0.83495 1.45820 1.26245 1.33343 1.07514 0.91318 0.90008 0.91218 0.90283 0.89159 0.89656 0.91092 0.88857 0.88193 0.88968 0.92310 0.80385 0.92083 0.90883 0.88963 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 9.02 37.16 0.34 -0.72 16 2 C 0.12 0.97 3.62 -67.81 -0.25 0.72 16 3 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -0.80 5.25 -26.52 -0.14 -0.94 16 5 C -0.13 -0.85 5.96 -26.44 -0.16 -1.00 16 6 C -0.03 -0.36 6.33 -27.51 -0.17 -0.53 16 7 C 0.20 3.04 7.65 -155.24 -1.19 1.85 16 8 N -0.39 -7.33 11.24 -9.83 -0.11 -7.44 16 9 C -0.55 -10.02 7.09 -17.68 -0.13 -10.15 16 10 S 2.75 54.30 6.40 -107.50 -0.69 53.61 16 11 O -0.96 -20.58 18.02 -57.17 -1.03 -21.61 16 12 O -0.97 -19.78 17.95 -57.17 -1.03 -20.80 16 13 N -1.03 -21.66 4.23 -125.01 -0.53 -22.18 16 14 C 0.10 2.11 7.60 -8.37 -0.06 2.04 16 15 C 0.20 4.62 1.10 -91.12 -0.10 4.52 16 16 O -0.54 -12.96 13.33 -35.23 -0.47 -13.43 16 17 C -0.53 -13.97 9.27 -34.44 -0.32 -14.28 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 19 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.88 -25.15 13.96 55.43 0.77 -24.37 16 21 Si 0.86 19.77 24.42 -169.99 -4.15 15.62 16 22 H -0.27 -5.99 7.06 56.52 0.40 -5.59 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -5.69 5.50 56.52 0.31 -5.38 16 25 C 0.15 3.26 8.14 -8.50 -0.07 3.19 16 26 C 0.06 0.83 10.69 -16.76 -0.18 0.65 16 27 N -0.45 -5.63 2.99 -106.68 -0.32 -5.95 16 28 H 0.07 0.44 7.53 -51.93 -0.39 0.05 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.90 8.10 -51.93 -0.42 1.48 16 38 H 0.06 1.27 7.15 -51.93 -0.37 0.89 16 39 H 0.34 8.06 3.16 45.56 0.14 8.20 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 43 H 0.19 2.06 7.70 -52.48 -0.40 1.66 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -35.38 358.86 -10.40 -45.78 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.74 Total: 7.98 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.52 Total: -12.60 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.18 Total: -59.95 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -2.53 Total: -55.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.15 Total: 15.62 kcal Atomic # 16 Polarization: 54.30 SS G_CDS: -0.69 Total: 53.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.38 -10.40 -45.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578766626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.924 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds