Wall clock time and date at job start Tue Mar 31 2020 23:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47160 * 2 1 4 4 C 1.50707 * 109.46916 * 240.00123 * 2 1 3 5 5 H 1.07999 * 119.99721 * 245.39712 * 4 2 1 6 6 C 1.37876 * 119.99939 * 65.40124 * 4 2 1 7 7 N 1.31517 * 119.99849 * 8.59356 * 6 4 2 8 8 Si 1.86799 * 120.00116 * 188.59397 * 6 4 2 9 9 H 1.48496 * 109.46900 * 94.99042 * 8 6 4 10 10 H 1.48497 * 109.47243 * 214.98878 * 8 6 4 11 11 H 1.48501 * 109.46975 * 334.98988 * 8 6 4 12 12 N 1.46502 * 109.47334 * 120.00151 * 2 1 3 13 13 C 1.46507 * 119.99965 * 60.00138 * 12 2 1 14 14 C 1.34779 * 120.00268 * 239.99579 * 12 2 1 15 15 O 1.21285 * 119.99503 * 0.02562 * 14 12 2 16 16 C 1.50693 * 120.00196 * 179.97438 * 14 12 2 17 17 N 1.46501 * 109.46989 * 179.97438 * 16 14 12 18 18 S 1.65605 * 119.99725 * 164.58025 * 17 16 14 19 19 O 1.42099 * 106.40166 * 308.70546 * 18 17 16 20 20 O 1.42102 * 106.40287 * 175.78670 * 18 17 16 21 21 C 1.76192 * 107.21554 * 62.24761 * 18 17 16 22 22 C 1.38126 * 120.03985 * 244.76237 * 21 18 17 23 23 C 1.38268 * 120.07965 * 179.97438 * 22 21 18 24 24 C 1.38304 * 120.14499 * 0.05183 * 23 22 21 25 25 C 1.38088 * 120.07815 * 359.97179 * 24 23 22 26 26 C 1.38893 * 120.03968 * 64.49121 * 21 18 17 27 27 N 1.39681 * 120.07207 * 0.02562 * 26 21 18 28 28 H 1.08994 * 109.47115 * 63.32179 * 1 2 3 29 29 H 1.09002 * 109.46678 * 183.32357 * 1 2 3 30 30 H 1.09002 * 109.46973 * 303.31943 * 1 2 3 31 31 H 0.97003 * 119.99654 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.46462 * 269.99912 * 13 12 2 33 33 H 1.08995 * 109.46901 * 29.99632 * 13 12 2 34 34 H 1.08999 * 109.46910 * 149.99937 * 13 12 2 35 35 H 1.09006 * 109.46677 * 60.00740 * 16 14 12 36 36 H 1.08996 * 109.47699 * 300.00764 * 16 14 12 37 37 H 0.96998 * 120.00122 * 344.59081 * 17 16 14 38 38 H 1.08003 * 119.95903 * 359.97438 * 22 21 18 39 39 H 1.07997 * 119.92779 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.96218 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.03637 * 180.02562 * 25 24 23 42 42 H 0.97000 * 119.99527 * 4.20069 * 27 26 21 43 43 H 0.97000 * 119.99529 * 184.20669 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5794 -1.6365 -1.1338 6 6 1.7935 -0.1780 -2.4797 7 7 1.2794 1.0272 -2.5935 8 14 2.2000 -1.1683 -4.0105 9 1 0.9848 -1.8853 -4.4733 10 1 2.6728 -0.2538 -5.0807 11 1 3.2656 -2.1531 -3.6944 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0860 1.1256 1.8916 16 6 3.2952 -0.7460 3.3140 17 7 4.1098 0.1746 4.1110 18 16 4.4755 -0.1930 5.6838 19 8 3.2441 -0.5088 6.3188 20 8 5.3466 0.8313 6.1432 21 6 5.4214 -1.6794 5.6654 22 6 4.9159 -2.8279 6.2428 23 6 5.6573 -3.9949 6.2284 24 6 6.9075 -4.0163 5.6372 25 6 7.4191 -2.8716 5.0586 26 6 6.6740 -1.6991 5.0655 27 7 7.1861 -0.5408 4.4762 28 1 -0.3633 0.4614 -0.9182 29 1 -0.3633 -1.0260 0.0596 30 1 -0.3633 0.5645 0.8588 31 1 1.1117 1.4019 -3.4724 32 1 0.7377 -2.1444 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4630 -2.5820 1.9862 35 1 3.9007 -1.6026 3.0175 36 1 2.4473 -1.0882 3.9072 37 1 4.4348 0.9995 3.7176 38 1 3.9404 -2.8143 6.7060 39 1 5.2595 -4.8916 6.6801 40 1 7.4842 -4.9294 5.6280 41 1 8.3952 -2.8892 4.5968 42 1 6.6945 0.2931 4.5387 43 1 8.0331 -0.5705 4.0045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585682176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:10 Heat of formation + Delta-G solvation = -77.187762 kcal Electronic energy + Delta-G solvation = -28071.587111 eV Core-core repulsion = 24050.938511 eV Total energy + Delta-G solvation = -4020.648600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.65462 -39.30449 -37.44143 -35.96093 -35.71639 -34.96754 -34.38351 -32.87247 -31.46973 -29.85601 -28.97438 -26.84643 -26.07576 -25.22476 -23.61352 -22.59202 -21.33118 -19.76014 -18.74791 -18.28896 -17.69883 -17.34434 -17.00357 -16.54932 -16.24275 -15.78549 -15.39087 -15.07336 -14.94341 -14.76634 -14.41951 -14.17000 -13.89036 -13.71309 -13.29966 -12.84861 -12.67984 -12.53854 -12.27107 -12.16178 -12.13760 -12.08446 -11.76975 -11.75363 -11.61063 -11.11182 -11.06632 -10.97511 -10.89398 -10.78490 -10.34636 -10.24907 -9.73514 -9.62814 -9.29079 -9.08965 -8.46841 -8.09603 -7.72649 -6.14531 -4.20191 0.26643 0.70337 1.25863 2.81825 3.17976 3.22269 3.28965 3.30260 3.31812 3.40827 3.66780 3.82127 4.23475 4.34635 4.59390 4.69929 4.81774 5.01601 5.09464 5.17642 5.22990 5.33359 5.35032 5.54396 5.57117 5.67510 5.71942 5.95002 5.95521 6.18988 6.27763 6.46111 6.63356 6.71504 6.89535 6.93639 6.97311 7.24148 7.25981 7.46489 7.62268 7.85885 8.09105 8.40132 8.74510 8.90700 9.45082 10.92812 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003089 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.057770 B = 9063.642108 C = 9670.160688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.255 3.745 3 H 0.071 0.929 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.076 3.924 14 C 0.503 3.497 15 O -0.544 6.544 16 C 0.100 3.900 17 N -1.106 6.106 18 S 2.702 3.298 19 O -0.958 6.958 20 O -0.963 6.963 21 C -0.755 4.755 22 C 0.022 3.978 23 C -0.199 4.199 24 C -0.019 4.019 25 C -0.216 4.216 26 C 0.316 3.684 27 N -0.865 5.865 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.426 0.574 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.403 0.597 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -10.626 15.739 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.155 3.845 3 H 0.089 0.911 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.068 4.068 14 C 0.288 3.712 15 O -0.423 6.423 16 C -0.030 4.030 17 N -0.870 5.870 18 S 2.792 3.208 19 O -0.948 6.948 20 O -0.953 6.953 21 C -0.848 4.848 22 C 0.003 3.997 23 C -0.220 4.220 24 C -0.039 4.039 25 C -0.239 4.239 26 C 0.205 3.795 27 N -0.404 5.404 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.265 0.735 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.235 0.765 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.258 -9.533 16.264 21.002 hybrid contribution 0.851 -0.671 -1.659 1.982 sum 10.109 -10.204 14.604 20.484 Atomic orbital electron populations 1.22017 0.98382 0.98994 1.00599 1.19005 0.90588 0.95098 0.79766 0.91137 1.21271 1.36646 1.08688 0.90341 0.92136 1.24902 0.95080 0.94635 0.98985 1.69970 1.43801 1.14161 1.24111 0.86526 0.78529 0.79951 0.82651 1.20566 1.21167 1.19925 1.48212 1.48575 1.11709 1.23396 1.21712 0.99182 0.83097 1.02786 1.20098 0.79787 0.87283 0.84059 1.90648 1.58470 1.16834 1.76323 1.21150 0.96077 0.92233 0.93536 1.55251 1.66580 1.32729 1.32391 1.01529 0.73863 0.73410 0.71966 1.93561 1.43011 1.85017 1.73222 1.93576 1.67164 1.55992 1.78579 1.30181 1.09993 1.21892 1.22742 1.20748 0.98353 0.90257 0.90372 1.21032 0.96268 0.98580 1.06085 1.21198 0.94477 0.97083 0.91100 1.20715 1.01497 0.92593 1.09108 1.17175 0.89461 0.87159 0.85702 1.43042 1.27554 1.09283 1.60557 0.90418 0.94846 0.96430 0.92628 0.93310 0.89734 0.92632 0.89153 0.87822 0.73496 0.83981 0.85356 0.85385 0.85317 0.76486 0.76166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.12 37.16 0.34 -2.88 16 2 C 0.26 6.26 2.50 -69.08 -0.17 6.08 16 3 H 0.07 2.03 6.85 -51.93 -0.36 1.68 16 4 C -0.53 -13.78 8.01 -34.44 -0.28 -14.06 16 5 H 0.06 1.53 7.15 -52.49 -0.38 1.15 16 6 C 0.07 1.79 5.19 -17.82 -0.09 1.70 16 7 N -0.88 -24.69 12.11 55.43 0.67 -24.02 16 8 Si 0.90 20.39 29.55 -169.99 -5.02 15.37 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.59 -11.73 2.75 -175.26 -0.48 -12.22 16 13 C 0.08 1.16 9.16 59.85 0.55 1.70 16 14 C 0.50 9.68 7.74 -10.99 -0.09 9.60 16 15 O -0.54 -12.48 15.06 5.55 0.08 -12.39 16 16 C 0.10 1.39 5.22 -5.20 -0.03 1.36 16 17 N -1.11 -14.72 5.64 -11.66 -0.07 -14.79 16 18 S 2.70 34.98 5.00 -107.50 -0.54 34.44 16 19 O -0.96 -14.41 16.53 -57.17 -0.95 -15.36 16 20 O -0.96 -14.16 16.25 -57.17 -0.93 -15.09 16 21 C -0.75 -8.55 5.84 -39.38 -0.23 -8.78 16 22 C 0.02 0.23 9.54 -39.61 -0.38 -0.15 16 23 C -0.20 -1.68 10.04 -39.55 -0.40 -2.08 16 24 C -0.02 -0.15 10.04 -39.61 -0.40 -0.55 16 25 C -0.22 -1.90 9.90 -39.38 -0.39 -2.29 16 26 C 0.32 3.31 6.72 -83.78 -0.56 2.75 16 27 N -0.87 -8.06 8.94 32.41 0.29 -7.77 16 28 H 0.08 1.94 6.79 -51.93 -0.35 1.59 16 29 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.37 6.92 -51.93 -0.36 1.01 16 34 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 35 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 36 H 0.10 1.27 7.78 -51.93 -0.40 0.86 16 37 H 0.43 5.84 7.71 -34.48 -0.27 5.58 16 38 H 0.14 1.29 7.33 -52.48 -0.38 0.90 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.40 4.10 5.91 -40.82 -0.24 3.86 16 43 H 0.41 2.71 8.85 -40.82 -0.36 2.35 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -34.57 367.64 -8.98 -43.55 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.46 Total: 10.34 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.12 Total: -7.60 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.41 Total: -58.79 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.79 Total: -42.84 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 34.98 SS G_CDS: -0.54 Total: 34.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.57 -8.98 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585682176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.643 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds