Wall clock time and date at job start Tue Mar 31 2020 23:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46944 * 2 1 4 4 C 1.35999 * 116.99895 * 179.97438 * 3 2 1 5 5 C 1.38589 * 120.06808 * 0.02562 * 4 3 2 6 6 C 1.38228 * 120.01961 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.92072 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47353 * 89.99610 * 7 6 5 9 9 C 1.47448 * 111.00041 * 69.15552 * 8 7 6 10 10 C 1.54321 * 107.23159 * 123.26094 * 9 8 7 11 11 C 1.55422 * 103.04810 * 22.28093 * 10 9 8 12 12 O 1.42906 * 111.00250 * 82.39224 * 11 10 9 13 13 C 1.50702 * 111.10698 * 206.29460 * 11 10 9 14 14 H 1.08002 * 119.99583 * 112.17314 * 13 11 10 15 15 C 1.37874 * 120.00111 * 292.17739 * 13 11 10 16 16 N 1.31511 * 119.99903 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99891 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47205 * 90.00035 * 17 15 13 19 19 H 1.48500 * 109.46905 * 210.00012 * 17 15 13 20 20 H 1.48497 * 109.47078 * 329.99991 * 17 15 13 21 21 C 1.47846 * 111.00020 * 189.99682 * 8 7 6 22 22 C 1.38258 * 120.15461 * 0.24274 * 6 5 4 23 23 C 1.38331 * 120.13164 * 359.49980 * 22 6 5 24 24 Cl 1.73600 * 120.01219 * 180.27324 * 23 22 6 25 25 C 1.38670 * 119.98028 * 0.50311 * 23 22 6 26 26 O 1.36017 * 120.07929 * 179.77063 * 25 23 22 27 27 H 1.08990 * 109.47278 * 299.99913 * 1 2 3 28 28 H 1.08999 * 109.47274 * 60.00469 * 1 2 3 29 29 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47122 * 240.00289 * 2 1 3 31 31 H 1.08999 * 109.47651 * 119.99919 * 2 1 3 32 32 H 1.08000 * 119.98776 * 359.94775 * 5 4 3 33 33 H 1.09001 * 109.47333 * 329.99109 * 7 6 5 34 34 H 1.09001 * 109.46990 * 209.99229 * 7 6 5 35 35 H 1.08999 * 109.88737 * 242.66366 * 9 8 7 36 36 H 1.09000 * 109.88899 * 3.85249 * 9 8 7 37 37 H 1.09004 * 110.70290 * 140.66846 * 10 9 8 38 38 H 1.09005 * 110.69934 * 263.71964 * 10 9 8 39 39 H 0.96696 * 113.99639 * 67.88556 * 12 11 10 40 40 H 0.97006 * 120.00009 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.37464 * 332.46590 * 21 8 7 42 42 H 1.08999 * 110.37318 * 94.69366 * 21 8 7 43 43 H 1.08003 * 119.93266 * 179.75051 * 22 6 5 44 44 H 0.96703 * 113.99632 * 269.97988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2001 0.4275 0.0005 6 6 5.5703 0.6097 0.0005 7 6 6.4877 -0.5859 0.0011 8 7 6.7858 -0.9750 -1.3837 9 6 7.6326 0.0344 -2.0456 10 6 8.9016 -0.6889 -2.5435 11 6 8.4459 -2.1717 -2.6386 12 8 7.7557 -2.4178 -3.8654 13 6 9.6149 -3.1098 -2.4819 14 1 9.6896 -3.7379 -1.6064 15 6 10.5889 -3.1662 -3.4560 16 7 10.4976 -2.4018 -4.5222 17 14 12.0383 -4.3286 -3.2614 18 1 11.7047 -5.6418 -3.8692 19 1 13.2271 -3.7556 -3.9424 20 1 12.3352 -4.5122 -1.8181 21 6 7.4834 -2.2778 -1.4294 22 6 6.1011 1.8864 0.0056 23 6 5.2630 2.9869 0.0003 24 17 5.9329 4.5884 -0.0004 25 6 3.8876 2.8105 0.0004 26 8 3.0617 3.8912 -0.0002 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7883 -0.5710 0.0009 33 1 6.0028 -1.4157 0.5154 34 1 7.4150 -0.3321 0.5148 35 1 7.0987 0.4701 -2.8901 36 1 7.9050 0.8140 -1.3342 37 1 9.1997 -0.3139 -3.5227 38 1 9.7147 -0.5781 -1.8261 39 1 8.3173 -2.3624 -4.6506 40 1 11.1827 -2.4417 -5.2078 41 1 8.0457 -2.4397 -0.5098 42 1 6.7683 -3.0859 -1.5833 43 1 7.1722 2.0246 0.0097 44 1 2.8226 4.2039 0.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:38 Heat of formation + Delta-G solvation = -106.510970 kcal Electronic energy + Delta-G solvation = -27715.432240 eV Core-core repulsion = 23659.175633 eV Total energy + Delta-G solvation = -4056.256607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66830 -38.70147 -38.12157 -36.86041 -36.46168 -34.59803 -32.14943 -32.06146 -31.21649 -29.86966 -28.79609 -28.01582 -25.60023 -24.25382 -23.98568 -21.96928 -21.72792 -19.99727 -19.56622 -18.77047 -17.66996 -17.05812 -16.74102 -16.40829 -15.58571 -15.28413 -15.12023 -14.93939 -14.74904 -14.28848 -14.16515 -13.81313 -13.34160 -12.95309 -12.88739 -12.86497 -12.78374 -12.46632 -12.17408 -11.92279 -11.67087 -11.52389 -11.43991 -11.26241 -11.20850 -11.14566 -10.87612 -10.76576 -10.68275 -10.67719 -10.45896 -10.28698 -9.89702 -9.27195 -8.72713 -8.60501 -8.30009 -8.07088 -7.68279 -6.25131 -4.33435 0.91282 1.14571 1.90806 3.02032 3.19697 3.27142 3.29302 3.34552 3.95202 4.25931 4.53916 4.68414 4.71855 4.83069 4.88646 4.95986 5.01907 5.03703 5.17122 5.30052 5.47449 5.50780 5.53681 5.64524 5.76562 5.77889 5.87290 5.93020 5.99063 6.07669 6.11876 6.37238 6.42687 6.45617 6.62999 6.83096 7.02897 7.03115 7.39353 7.43819 7.52660 7.56122 7.67414 7.79794 8.10179 8.68466 9.35921 9.59260 10.81990 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.002849 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.970845 B = 9825.799965 C =11189.410612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.305 6.305 4 C 0.118 3.882 5 C -0.171 4.171 6 C -0.018 4.018 7 C 0.084 3.916 8 N -0.520 5.520 9 C 0.044 3.956 10 C -0.148 4.148 11 C 0.254 3.746 12 O -0.581 6.581 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.058 3.942 22 C -0.128 4.128 23 C -0.023 4.023 24 Cl -0.054 7.054 25 C 0.073 3.927 26 O -0.475 6.475 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.138 0.862 44 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 8.621 11.966 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.219 6.219 4 C 0.071 3.929 5 C -0.190 4.190 6 C -0.019 4.019 7 C -0.044 4.044 8 N -0.244 5.244 9 C -0.084 4.084 10 C -0.187 4.187 11 C 0.213 3.787 12 O -0.390 6.390 13 C -0.575 4.575 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.728 3.272 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.069 4.069 22 C -0.147 4.147 23 C -0.050 4.050 24 Cl -0.025 7.025 25 C 0.026 3.974 26 O -0.283 6.283 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.234 0.766 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.155 0.845 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.066 8.781 11.332 20.797 hybrid contribution 2.254 -0.391 0.562 2.355 sum -12.813 8.390 11.893 19.391 Atomic orbital electron populations 1.21759 0.92609 1.02912 1.03450 1.22878 0.95942 0.81739 1.01919 1.86117 1.17861 1.29468 1.88447 1.19076 0.83209 0.92713 0.97870 1.21130 0.93316 0.98175 1.06411 1.19616 0.93411 0.94096 0.94782 1.21225 0.96701 0.94255 0.92219 1.63672 1.45049 1.03557 1.12161 1.22884 0.94154 0.93602 0.97734 1.23342 0.94737 0.99396 1.01263 1.19528 0.87446 0.89879 0.81807 1.86100 1.41355 1.94048 1.17506 1.21566 1.06323 1.23292 1.06363 0.92037 1.25006 0.97998 0.95174 0.94936 1.69583 1.35690 1.38835 1.09478 0.86458 0.81478 0.80894 0.78356 1.20405 1.21073 1.19839 1.23031 0.95801 0.89792 0.98256 1.20878 1.00101 0.90226 1.03527 1.20944 0.91677 0.87150 1.05246 1.98368 1.84959 1.22425 1.96771 1.17210 0.87020 0.84749 1.08442 1.84939 1.66052 1.44395 1.32919 0.91678 0.91426 0.90247 0.91402 0.91892 0.84321 0.90036 0.93551 0.91645 0.94277 0.90806 0.92637 0.76638 0.92176 0.93462 0.90967 0.84451 0.76196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.45 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.69 9.92 -34.26 -0.34 -4.03 16 4 C 0.12 1.53 6.70 -39.13 -0.26 1.27 16 5 C -0.17 -2.19 8.69 -39.46 -0.34 -2.53 16 6 C -0.02 -0.25 5.09 -104.62 -0.53 -0.78 16 7 C 0.08 1.24 4.75 -4.98 -0.02 1.21 16 8 N -0.52 -9.69 5.15 -232.68 -1.20 -10.89 16 9 C 0.04 0.85 6.26 -2.83 -0.02 0.83 16 10 C -0.15 -3.36 5.65 -24.75 -0.14 -3.50 16 11 C 0.25 6.20 0.89 -89.48 -0.08 6.12 16 12 O -0.58 -15.26 13.18 -35.23 -0.46 -15.73 16 13 C -0.54 -14.08 8.26 -34.44 -0.28 -14.36 16 14 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.90 -23.71 10.80 55.43 0.60 -23.11 16 17 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 21 C 0.06 1.21 5.85 -2.30 -0.01 1.20 16 22 C -0.13 -1.72 8.48 -39.54 -0.34 -2.06 16 23 C -0.02 -0.30 6.33 -39.39 -0.25 -0.55 16 24 Cl -0.05 -0.66 28.50 -51.86 -1.48 -2.14 16 25 C 0.07 0.95 6.71 -39.10 -0.26 0.69 16 26 O -0.47 -5.68 12.75 -34.32 -0.44 -6.11 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.14 1.58 6.30 -52.49 -0.33 1.24 16 33 H 0.08 1.07 8.02 -51.93 -0.42 0.65 16 34 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.04 0.67 5.46 -51.93 -0.28 0.39 16 37 H 0.07 1.80 7.85 -51.93 -0.41 1.39 16 38 H 0.05 1.26 8.04 -51.93 -0.42 0.84 16 39 H 0.38 10.26 6.93 45.56 0.32 10.58 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.14 1.78 6.92 -52.48 -0.36 1.41 16 44 H 0.38 2.84 9.06 45.56 0.41 3.26 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -29.27 372.17 -9.54 -38.81 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -4.75 Total: 13.02 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.05 Total: -10.71 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.60 Total: -34.01 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.24 Total: -25.87 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.27 -9.54 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.698 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds