Wall clock time and date at job start Tue Mar 31 2020 23:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47601 * 2 1 4 4 O 1.42898 * 109.47060 * 120.00134 * 2 1 3 5 5 C 1.35935 * 117.00015 * 275.33543 * 4 2 1 6 6 C 1.38733 * 120.02188 * 5.08651 * 5 4 2 7 7 C 1.38167 * 120.01402 * 179.71920 * 6 5 4 8 8 C 1.38410 * 120.05339 * 0.55354 * 7 6 5 9 9 F 1.35099 * 119.97503 * 179.74265 * 8 7 6 10 10 C 1.38645 * 120.04204 * 359.72354 * 8 7 6 11 11 F 1.35097 * 120.00711 * 180.02562 * 10 8 7 12 12 C 1.38370 * 119.98667 * 359.97438 * 10 8 7 13 13 C 1.50711 * 109.46813 * 239.99775 * 2 1 3 14 14 O 1.21278 * 119.99699 * 244.99999 * 13 2 1 15 15 N 1.34776 * 119.99674 * 65.00336 * 13 2 1 16 16 C 1.47424 * 125.65112 * 359.97436 * 15 13 2 17 17 C 1.54907 * 104.83055 * 155.89434 * 16 15 13 18 18 C 1.55159 * 101.58475 * 37.00887 * 17 16 15 19 19 O 1.42897 * 110.71604 * 82.85963 * 18 17 16 20 20 C 1.50694 * 110.87258 * 206.06321 * 18 17 16 21 21 H 1.08003 * 120.00254 * 113.60895 * 20 18 17 22 22 C 1.37874 * 120.00089 * 293.61088 * 20 18 17 23 23 N 1.31511 * 120.00208 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 120.00029 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46989 * 59.99818 * 24 22 20 26 26 H 1.48502 * 109.47243 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46944 * 299.99653 * 24 22 20 28 28 C 1.47022 * 125.64317 * 180.02562 * 15 13 2 29 29 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46714 * 300.00252 * 1 2 3 31 31 H 1.09002 * 109.47439 * 59.99950 * 1 2 3 32 32 H 1.07998 * 119.98830 * 359.97438 * 6 5 4 33 33 H 1.07996 * 119.96848 * 180.29611 * 7 6 5 34 34 H 1.07991 * 120.02420 * 179.97438 * 12 10 8 35 35 H 1.09005 * 110.36520 * 274.73097 * 16 15 13 36 36 H 1.08999 * 110.36380 * 37.04937 * 16 15 13 37 37 H 1.09000 * 110.99986 * 155.08215 * 17 16 15 38 38 H 1.08998 * 111.00295 * 278.93169 * 17 16 15 39 39 H 0.96698 * 114.00282 * 66.48294 * 19 18 17 40 40 H 0.97004 * 120.00618 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.88193 * 300.44917 * 28 15 13 42 42 H 1.08991 * 109.88739 * 61.46118 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1058 0.0610 2.3061 6 6 1.6537 1.3724 2.3282 7 6 1.7496 2.1171 3.4880 8 6 2.3071 1.5596 4.6256 9 9 2.4049 2.2909 5.7573 10 6 2.7650 0.2511 4.6045 11 9 3.3085 -0.2925 5.7154 12 6 2.6640 -0.4983 3.4457 13 6 2.0323 -0.7105 -1.2305 14 8 2.6529 -1.7468 -1.1215 15 7 1.7918 -0.1942 -2.4521 16 6 1.0537 1.0517 -2.7282 17 6 1.5684 1.5189 -4.1125 18 6 1.7461 0.1664 -4.8517 19 8 0.5023 -0.2794 -5.3961 20 6 2.7896 0.2785 -5.9330 21 1 3.7169 -0.2686 -5.8476 22 6 2.5607 1.0796 -7.0316 23 7 1.4319 1.7463 -7.1355 24 14 3.8546 1.2191 -8.3717 25 1 4.1114 -0.1228 -8.9535 26 1 3.3690 2.1346 -9.4353 27 1 5.1119 1.7562 -7.7918 28 6 2.2213 -0.7809 -3.7299 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2229 1.8099 1.4397 33 1 1.3931 3.1364 3.5057 34 1 3.0208 -1.5174 3.4285 35 1 -0.0181 0.8567 -2.7680 36 1 1.2759 1.8006 -1.9681 37 1 0.8291 2.1438 -4.6136 38 1 2.5205 2.0413 -4.0193 39 1 0.1597 0.2817 -6.1052 40 1 1.2710 2.3102 -7.9082 41 1 3.3078 -0.8658 -3.7522 42 1 1.7702 -1.7650 -3.8563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:21 Heat of formation + Delta-G solvation = -175.858552 kcal Electronic energy + Delta-G solvation = -29548.660753 eV Core-core repulsion = 24937.600329 eV Total energy + Delta-G solvation = -4611.060424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.73405 -48.79784 -40.90353 -39.50885 -37.77372 -36.96129 -34.58523 -32.55802 -32.24876 -31.08121 -29.82263 -29.58274 -28.38639 -25.68030 -24.60568 -23.79799 -22.90471 -21.97817 -20.04031 -19.19550 -19.04630 -17.77000 -17.66207 -17.41071 -16.97943 -16.64126 -16.16855 -15.70639 -15.60673 -15.24333 -15.20444 -14.98381 -14.78562 -14.39067 -14.29329 -14.24438 -13.58561 -13.29415 -13.15538 -13.05422 -12.93018 -12.43408 -12.21160 -12.07728 -12.05042 -11.71726 -11.52829 -11.45909 -11.31216 -11.12301 -10.94099 -10.75161 -10.59651 -10.23994 -9.61204 -9.46387 -9.45523 -8.76209 -8.54922 -8.34788 -8.22682 -6.39588 -4.47047 0.52599 0.66741 2.33934 2.74523 2.98193 3.15945 3.21131 3.24461 3.38508 3.61234 4.03368 4.17915 4.19847 4.31106 4.45778 4.60000 4.67027 4.71828 4.81241 4.88329 5.27863 5.32478 5.36913 5.38770 5.47504 5.54292 5.59991 5.71030 5.72946 5.78085 5.91320 6.02926 6.22513 6.31251 6.51541 6.71964 6.78420 6.92822 7.16176 7.20398 7.63567 7.83892 7.88613 8.35617 8.55175 9.21394 9.34074 10.68241 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.002236 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.754171 B =12518.356002 C =12657.208938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.100 0.900 4 O -0.275 6.275 5 C 0.160 3.840 6 C -0.196 4.196 7 C -0.080 4.080 8 C 0.023 3.977 9 F -0.132 7.132 10 C 0.111 3.889 11 F -0.123 7.123 12 C -0.162 4.162 13 C 0.527 3.473 14 O -0.529 6.529 15 N -0.602 5.602 16 C 0.090 3.910 17 C -0.138 4.138 18 C 0.250 3.750 19 O -0.587 6.587 20 C -0.537 4.537 21 H 0.065 0.935 22 C 0.073 3.927 23 N -0.898 5.898 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.124 3.876 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.387 0.613 40 H 0.271 0.729 41 H 0.074 0.926 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 3.862 17.432 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 H 0.117 0.883 4 O -0.187 6.187 5 C 0.113 3.887 6 C -0.214 4.214 7 C -0.099 4.099 8 C 0.003 3.997 9 F -0.110 7.110 10 C 0.091 3.909 11 F -0.102 7.102 12 C -0.181 4.181 13 C 0.313 3.687 14 O -0.406 6.406 15 N -0.336 5.336 16 C -0.032 4.032 17 C -0.177 4.177 18 C 0.209 3.791 19 O -0.397 6.397 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.129 4.129 23 N -0.538 5.538 24 Si 0.732 3.268 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.200 1.200 28 C 0.003 3.997 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.828 2.715 17.920 18.344 hybrid contribution 0.603 0.935 -0.799 1.370 sum -2.224 3.650 17.121 17.647 Atomic orbital electron populations 1.22427 0.92247 1.04894 1.04283 1.22294 0.96100 0.96982 0.83614 0.88260 1.86249 1.80234 1.36799 1.15399 1.18693 0.93356 0.89909 0.86753 1.21313 1.06310 0.93891 0.99922 1.20849 0.97622 1.01061 0.90348 1.17511 1.07902 0.89438 0.84867 1.91519 1.94650 1.76412 1.48446 1.17218 0.99069 0.90707 0.83946 1.91549 1.83122 1.85658 1.49823 1.20192 1.05619 1.02607 0.89711 1.19427 0.80908 0.85459 0.82942 1.90723 1.40714 1.23345 1.85817 1.48513 1.54395 1.25417 1.05303 1.22648 0.96160 0.84858 0.99530 1.23348 1.01427 1.00922 0.91970 1.19416 0.83647 0.86937 0.89099 1.86096 1.39277 1.57319 1.57011 1.21490 1.02862 1.28250 1.04872 0.91673 1.24981 0.95895 0.94073 0.97999 1.69548 1.24105 1.29593 1.30536 0.86442 0.81332 0.78263 0.80787 1.19927 1.21057 1.20025 1.22157 0.99418 0.97672 0.80499 0.90438 0.90733 0.89229 0.83354 0.83184 0.82581 0.91298 0.92172 0.89391 0.91262 0.76072 0.91945 0.90752 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.03 37.16 0.34 -1.47 16 2 C 0.07 0.87 1.99 -27.88 -0.06 0.82 16 3 H 0.10 1.00 5.78 -51.93 -0.30 0.70 16 4 O -0.28 -3.71 9.34 -39.40 -0.37 -4.08 16 5 C 0.16 1.75 6.60 -39.24 -0.26 1.49 16 6 C -0.20 -1.68 8.23 -39.42 -0.32 -2.00 16 7 C -0.08 -0.64 10.02 -39.54 -0.40 -1.04 16 8 C 0.02 0.23 7.30 -39.37 -0.29 -0.06 16 9 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 10 C 0.11 1.18 7.30 -39.38 -0.29 0.89 16 11 F -0.12 -1.40 17.18 2.25 0.04 -1.37 16 12 C -0.16 -1.71 9.96 -39.37 -0.39 -2.11 16 13 C 0.53 9.15 7.24 -10.98 -0.08 9.07 16 14 O -0.53 -11.30 16.83 -14.30 -0.24 -11.54 16 15 N -0.60 -10.71 3.33 -170.52 -0.57 -11.28 16 16 C 0.09 1.39 5.33 -2.53 -0.01 1.38 16 17 C -0.14 -2.67 5.68 -24.58 -0.14 -2.81 16 18 C 0.25 5.60 0.86 -89.94 -0.08 5.52 16 19 O -0.59 -13.86 13.09 -35.23 -0.46 -14.32 16 20 C -0.54 -13.28 8.22 -34.44 -0.28 -13.56 16 21 H 0.07 1.62 7.53 -52.48 -0.40 1.23 16 22 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 23 N -0.90 -21.84 10.71 55.43 0.59 -21.24 16 24 Si 0.90 19.44 29.54 -169.99 -5.02 14.41 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 C 0.12 2.60 6.22 -3.06 -0.02 2.58 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.57 6.90 -51.93 -0.36 0.21 16 31 H 0.09 0.85 5.56 -51.93 -0.29 0.56 16 32 H 0.15 0.98 5.42 -52.49 -0.28 0.70 16 33 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.07 1.00 7.17 -51.93 -0.37 0.63 16 36 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 37 H 0.09 1.77 7.78 -51.93 -0.40 1.37 16 38 H 0.07 1.37 8.04 -51.93 -0.42 0.96 16 39 H 0.39 9.26 6.98 45.56 0.32 9.58 16 40 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 41 H 0.07 1.60 7.63 -51.93 -0.40 1.21 16 42 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -28.25 354.54 -7.12 -35.37 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.10 Total: 9.69 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.37 Total: 0.40 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.03 Total: -32.52 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.07 Total: -29.94 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.25 -7.12 -35.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.488 kcal (2) G-P(sol) polarization free energy of solvation -28.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds