Wall clock time and date at job start Tue Mar 31 2020 23:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47540 * 2 1 4 4 O 1.42894 * 109.47330 * 239.99928 * 2 1 3 5 5 C 1.35945 * 117.00245 * 85.08942 * 4 2 1 6 6 C 1.38729 * 120.01726 * 354.69372 * 5 4 2 7 7 C 1.38163 * 120.01226 * 179.97438 * 6 5 4 8 8 C 1.38410 * 120.05774 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.98149 * 179.97438 * 8 7 6 10 10 C 1.38655 * 120.03597 * 359.97438 * 8 7 6 11 11 F 1.35106 * 120.00413 * 180.02562 * 10 8 7 12 12 C 1.38357 * 119.98563 * 359.72933 * 10 8 7 13 13 C 1.50708 * 109.47428 * 119.99567 * 2 1 3 14 14 O 1.21279 * 119.99860 * 110.32841 * 13 2 1 15 15 N 1.34770 * 119.99919 * 290.33370 * 13 2 1 16 16 C 1.47019 * 125.65088 * 355.44402 * 15 13 2 17 17 C 1.54327 * 107.27033 * 178.89959 * 16 15 13 18 18 C 1.55159 * 102.94338 * 337.81093 * 17 16 15 19 19 O 1.42898 * 111.00523 * 277.42688 * 18 17 16 20 20 C 1.50697 * 111.00259 * 153.61326 * 18 17 16 21 21 H 1.07994 * 120.00090 * 244.58310 * 20 18 17 22 22 C 1.37882 * 119.99913 * 64.58638 * 20 18 17 23 23 N 1.31510 * 120.00013 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 119.99834 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47215 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47157 * 119.99634 * 24 22 20 27 27 H 1.48502 * 109.46932 * 239.99640 * 24 22 20 28 28 C 1.47426 * 125.64620 * 175.40285 * 15 13 2 29 29 H 1.09004 * 109.46936 * 293.62081 * 1 2 3 30 30 H 1.08994 * 109.47740 * 53.62542 * 1 2 3 31 31 H 1.09002 * 109.46814 * 173.62905 * 1 2 3 32 32 H 1.07996 * 119.99086 * 359.97371 * 6 5 4 33 33 H 1.08001 * 119.97254 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.02437 * 180.28993 * 12 10 8 35 35 H 1.09005 * 109.87673 * 59.48456 * 16 15 13 36 36 H 1.08992 * 109.88633 * 298.32076 * 16 15 13 37 37 H 1.09007 * 110.71781 * 219.44768 * 17 16 15 38 38 H 1.09004 * 110.87145 * 96.24639 * 17 16 15 39 39 H 0.96701 * 114.00344 * 298.55086 * 19 18 17 40 40 H 0.96999 * 119.99874 * 180.02562 * 23 22 20 41 41 H 1.09003 * 110.37143 * 85.33200 * 28 15 13 42 42 H 1.09003 * 110.36706 * 323.00750 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1143 0.0633 -2.3040 6 6 1.6660 1.3759 -2.3257 7 6 1.7763 2.1249 -3.4814 8 6 2.3335 1.5666 -4.6188 9 9 2.4401 2.3002 -5.7482 10 6 2.7822 0.2548 -4.5996 11 9 3.3265 -0.2894 -5.7100 12 6 2.6782 -0.4948 -3.4413 13 6 2.0323 -0.7103 1.2306 14 8 2.5785 -1.7883 1.1279 15 7 1.8746 -0.1477 2.4450 16 6 1.3193 1.1886 2.7047 17 6 1.3073 1.3903 4.2347 18 6 1.3299 -0.0632 4.7771 19 8 0.0167 -0.6266 4.7872 20 6 1.9486 -0.1178 6.1501 21 1 2.8741 -0.6524 6.3044 22 6 1.3329 0.5148 7.2093 23 7 0.2061 1.1662 7.0213 24 14 2.1003 0.4477 8.9111 25 1 3.3571 -0.3413 8.8567 26 1 2.4006 1.8266 9.3734 27 1 1.1528 -0.1960 9.8562 28 6 2.2296 -0.7707 3.7332 29 1 -0.3633 0.4118 0.9416 30 1 -0.3634 0.6094 -0.8274 31 1 -0.3633 -1.0214 -0.1140 32 1 1.2307 1.8124 -1.4389 33 1 1.4267 3.1466 -3.4977 34 1 3.0318 -1.5151 -3.4243 35 1 0.3033 1.2499 2.3147 36 1 1.9451 1.9477 2.2356 37 1 0.3991 1.9050 4.5487 38 1 2.1916 1.9376 4.5612 39 1 -0.6094 -0.1549 5.3534 40 1 -0.2268 1.6115 7.7663 41 1 3.2817 -0.5989 3.9606 42 1 2.0153 -1.8392 3.7097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:29 Heat of formation + Delta-G solvation = -175.359077 kcal Electronic energy + Delta-G solvation = -29574.819498 eV Core-core repulsion = 24963.780732 eV Total energy + Delta-G solvation = -4611.038766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.73125 -48.79578 -40.88394 -39.49097 -37.76249 -36.93914 -34.51930 -32.52878 -32.28561 -31.07157 -29.85295 -29.59018 -28.38760 -25.67021 -24.56224 -23.79648 -22.89570 -21.94493 -20.01648 -19.23364 -19.02157 -17.75344 -17.66490 -17.35258 -16.98052 -16.63716 -16.16659 -15.72951 -15.56181 -15.22023 -15.12803 -15.05549 -14.78565 -14.42120 -14.32189 -14.17498 -13.63422 -13.29858 -13.23907 -12.96080 -12.80492 -12.43990 -12.35781 -12.13932 -11.86853 -11.82609 -11.48993 -11.44323 -11.28497 -11.12079 -10.96620 -10.72958 -10.52031 -10.14899 -9.59262 -9.47638 -9.46119 -8.77649 -8.54422 -8.33760 -8.20039 -6.38800 -4.46024 0.52915 0.67099 2.36092 2.75727 2.98521 3.12913 3.22714 3.26812 3.40219 3.62519 4.03597 4.18481 4.20548 4.31929 4.48250 4.63008 4.68377 4.74190 4.81900 4.89688 5.29352 5.35193 5.37711 5.39848 5.47446 5.54626 5.56492 5.69463 5.72858 5.78961 5.98247 6.12348 6.23500 6.28300 6.48614 6.72156 6.76317 6.94215 7.15478 7.19471 7.64112 7.85350 7.92210 8.37439 8.56844 9.21534 9.31335 10.69221 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.002195 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.628407 B =12750.887264 C =13077.866568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.070 3.930 3 H 0.098 0.902 4 O -0.276 6.276 5 C 0.160 3.840 6 C -0.196 4.196 7 C -0.080 4.080 8 C 0.023 3.977 9 F -0.132 7.132 10 C 0.111 3.889 11 F -0.123 7.123 12 C -0.162 4.162 13 C 0.528 3.472 14 O -0.530 6.530 15 N -0.601 5.601 16 C 0.090 3.910 17 C -0.139 4.139 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.535 4.535 21 H 0.066 0.934 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.903 3.097 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.122 3.878 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.383 0.617 40 H 0.268 0.732 41 H 0.075 0.925 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 5.313 -17.219 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.010 3.990 3 H 0.115 0.885 4 O -0.187 6.187 5 C 0.113 3.887 6 C -0.214 4.214 7 C -0.099 4.099 8 C 0.003 3.997 9 F -0.110 7.110 10 C 0.091 3.909 11 F -0.102 7.102 12 C -0.182 4.182 13 C 0.314 3.686 14 O -0.406 6.406 15 N -0.335 5.335 16 C -0.032 4.032 17 C -0.177 4.177 18 C 0.208 3.792 19 O -0.392 6.392 20 C -0.573 4.573 21 H 0.084 0.916 22 C -0.129 4.129 23 N -0.536 5.536 24 Si 0.731 3.269 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.207 1.207 28 C 0.001 3.999 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.333 4.175 -17.712 18.200 hybrid contribution 0.097 0.827 0.979 1.285 sum 0.430 5.001 -16.733 17.470 Atomic orbital electron populations 1.22404 0.92084 1.04814 1.04382 1.22319 0.96240 0.96852 0.83546 0.88473 1.86261 1.80239 1.36653 1.15571 1.18701 0.93269 0.89900 0.86838 1.21316 1.06279 0.93843 1.00002 1.20847 0.97591 1.01064 0.90386 1.17511 1.08009 0.89291 0.84931 1.91518 1.94584 1.76293 1.48639 1.17220 0.99107 0.90677 0.83944 1.91552 1.83090 1.85653 1.49869 1.20193 1.05589 1.02625 0.89747 1.19424 0.80271 0.85886 0.82998 1.90718 1.42885 1.21400 1.85621 1.48488 1.61376 1.18120 1.05534 1.22380 0.97401 0.82967 1.00460 1.23221 1.03361 1.01772 0.89368 1.19608 0.81382 0.86612 0.91554 1.86129 1.22422 1.59233 1.71378 1.21470 1.09176 1.33995 0.92651 0.91575 1.24977 0.94688 0.93740 0.99526 1.69646 1.17288 1.34171 1.32458 0.86350 0.79473 0.77888 0.83210 1.19546 1.20812 1.20738 1.22454 0.98842 0.98432 0.80167 0.89116 0.90815 0.90311 0.83345 0.83197 0.82584 0.91843 0.92630 0.89484 0.91104 0.76633 0.92172 0.90722 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.14 37.15 0.34 -1.58 16 2 C 0.07 0.89 2.03 -27.88 -0.06 0.84 16 3 H 0.10 0.98 6.12 -51.93 -0.32 0.66 16 4 O -0.28 -3.76 9.35 -39.29 -0.37 -4.13 16 5 C 0.16 1.76 6.60 -39.24 -0.26 1.50 16 6 C -0.20 -1.69 8.31 -39.43 -0.33 -2.01 16 7 C -0.08 -0.64 10.02 -39.55 -0.40 -1.04 16 8 C 0.02 0.23 7.30 -39.36 -0.29 -0.06 16 9 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 10 C 0.11 1.18 7.30 -39.38 -0.29 0.89 16 11 F -0.12 -1.40 17.18 2.25 0.04 -1.37 16 12 C -0.16 -1.72 9.96 -39.38 -0.39 -2.11 16 13 C 0.53 9.29 7.17 -10.98 -0.08 9.21 16 14 O -0.53 -11.39 16.82 -14.16 -0.24 -11.63 16 15 N -0.60 -10.72 3.33 -170.52 -0.57 -11.29 16 16 C 0.09 1.39 6.17 -3.06 -0.02 1.37 16 17 C -0.14 -2.66 5.51 -24.89 -0.14 -2.79 16 18 C 0.25 5.55 0.87 -89.62 -0.08 5.47 16 19 O -0.58 -13.77 13.15 -35.23 -0.46 -14.24 16 20 C -0.53 -13.14 8.25 -34.44 -0.28 -13.42 16 21 H 0.07 1.64 7.78 -52.49 -0.41 1.23 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 23 N -0.90 -21.76 10.78 55.43 0.60 -21.17 16 24 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.12 2.54 6.07 -2.53 -0.02 2.52 16 29 H 0.09 0.99 5.60 -51.93 -0.29 0.70 16 30 H 0.07 0.59 6.87 -51.93 -0.36 0.23 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.15 1.00 5.34 -52.49 -0.28 0.72 16 33 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.06 0.87 5.88 -51.93 -0.31 0.56 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.75 7.68 -51.93 -0.40 1.35 16 38 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 39 H 0.38 9.08 7.32 45.56 0.33 9.42 16 40 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 41 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 42 H 0.07 1.63 8.08 -51.93 -0.42 1.21 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -28.30 356.11 -7.09 -35.40 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.10 Total: 9.64 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.37 Total: 0.47 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.03 Total: -32.45 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.07 Total: -30.00 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.30 -7.09 -35.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.964 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds