Wall clock time and date at job start Wed Apr 1 2020 00:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33874 * 122.76371 * 2 1 4 4 O 1.21230 * 125.39883 * 359.96137 * 3 2 1 5 5 C 1.51314 * 109.21132 * 180.02562 * 3 2 1 6 6 C 1.54231 * 103.55093 * 359.97438 * 5 3 2 7 7 H 1.08996 * 110.73664 * 118.58461 * 6 5 3 8 8 N 1.46502 * 110.60677 * 241.48550 * 6 5 3 9 9 C 1.34773 * 119.99967 * 203.68088 * 8 6 5 10 10 O 1.21673 * 120.00128 * 4.26096 * 9 8 6 11 11 C 1.46894 * 120.00098 * 184.25751 * 9 8 6 12 12 C 1.36124 * 125.43611 * 174.22859 * 11 9 8 13 13 C 1.41703 * 107.74560 * 179.97438 * 12 11 9 14 14 C 1.40017 * 133.34876 * 180.02562 * 13 12 11 15 15 C 1.36575 * 119.83148 * 180.02562 * 14 13 12 16 16 C 1.38854 * 120.60060 * 359.95424 * 15 14 13 17 17 C 1.37850 * 120.63012 * 0.02562 * 16 15 14 18 18 C 1.39080 * 119.81571 * 359.97438 * 17 16 15 19 19 N 1.37840 * 133.16310 * 180.29089 * 18 17 16 20 20 C 1.36892 * 125.61976 * 359.97438 * 19 18 17 21 21 H 1.07997 * 120.00010 * 132.88871 * 20 19 18 22 22 C 1.39011 * 119.99615 * 312.88571 * 20 19 18 23 23 N 1.31347 * 120.00314 * 3.22800 * 22 20 19 24 24 Si 1.86809 * 119.99456 * 183.23004 * 22 20 19 25 25 H 1.48496 * 109.47251 * 65.00447 * 24 22 20 26 26 H 1.48501 * 109.46564 * 185.00245 * 24 22 20 27 27 H 1.48498 * 109.46912 * 305.00115 * 24 22 20 28 28 C 1.33878 * 122.76011 * 179.97438 * 2 1 3 29 29 O 1.21219 * 125.39904 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.47631 * 270.00135 * 1 2 3 31 31 H 1.09004 * 109.47145 * 30.00096 * 1 2 3 32 32 H 1.08999 * 109.47477 * 150.00344 * 1 2 3 33 33 H 1.09000 * 110.60423 * 241.48709 * 5 3 2 34 34 H 1.08996 * 110.60901 * 118.51042 * 5 3 2 35 35 H 0.97005 * 119.99860 * 23.67861 * 8 6 5 36 36 H 1.07998 * 126.12506 * 359.97438 * 12 11 9 37 37 H 1.07996 * 120.08827 * 359.93905 * 14 13 12 38 38 H 1.07995 * 119.70437 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.68959 * 179.97438 * 16 15 14 40 40 H 1.08006 * 120.09106 * 179.97438 * 17 16 15 41 41 H 0.97002 * 119.99832 * 185.00710 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1894 1.1258 0.0000 4 8 1.7385 2.2511 -0.0007 5 6 3.6604 0.7712 -0.0006 6 6 3.6604 -0.7711 -0.0003 7 1 4.1477 -1.1572 -0.8956 8 7 4.3156 -1.2865 1.2044 9 6 4.8490 -2.5242 1.2042 10 8 4.8555 -3.1838 0.1818 11 6 5.4226 -3.0770 2.4384 12 6 5.8869 -4.3472 2.5931 13 6 6.3540 -4.4771 3.9246 14 6 6.9285 -5.5328 4.6430 15 6 7.2849 -5.3514 5.9488 16 6 7.0838 -4.1274 6.5729 17 6 6.5204 -3.0732 5.8864 18 6 6.1493 -3.2339 4.5557 19 7 5.5825 -2.3885 3.6262 20 6 5.2321 -1.0833 3.8446 21 1 5.5130 -0.3222 3.1318 22 6 4.5145 -0.7377 4.9839 23 7 4.2276 -1.6522 5.8820 24 14 3.9583 1.0275 5.2376 25 1 2.9766 1.3933 4.1852 26 1 3.3237 1.1592 6.5737 27 1 5.1323 1.9330 5.1557 28 6 2.1894 -1.1258 0.0005 29 8 1.7384 -2.2510 0.0014 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 4.1478 1.1545 0.8958 34 1 4.1472 1.1549 -0.8972 35 1 4.3655 -0.7369 2.0022 36 1 5.8974 -5.1178 1.8366 37 1 7.0880 -6.4886 4.1661 38 1 7.7274 -6.1672 6.5010 39 1 7.3708 -4.0004 7.6063 40 1 6.3676 -2.1250 6.3805 41 1 3.6656 -1.4279 6.6402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594356247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:24 Heat of formation + Delta-G solvation = -25.920885 kcal Electronic energy + Delta-G solvation = -29874.658819 eV Core-core repulsion = 25720.789366 eV Total energy + Delta-G solvation = -4153.869453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01383 -40.52955 -38.86993 -38.31175 -35.98657 -35.96975 -34.90392 -33.70781 -31.70464 -30.75233 -29.05285 -28.16117 -27.09859 -25.90765 -25.12022 -23.29824 -22.03012 -21.08792 -20.38218 -19.65595 -19.46315 -18.32358 -17.34563 -17.27899 -16.64478 -16.42004 -15.72292 -15.37440 -15.07296 -14.94779 -14.67175 -14.38783 -14.28243 -14.04826 -13.84078 -13.27013 -13.14507 -13.09730 -12.93260 -12.75501 -12.71071 -12.59596 -12.09137 -11.97159 -11.75779 -11.64616 -11.23194 -10.90403 -10.85875 -10.72455 -10.31172 -10.24163 -9.87080 -9.80882 -9.60533 -9.37901 -8.86336 -8.66002 -7.27085 -6.93742 -6.65190 -4.85198 1.39422 1.75840 2.37032 2.56053 2.70519 2.82775 2.85432 2.88340 3.05225 3.49162 3.57333 3.94624 4.08653 4.16401 4.24558 4.46005 4.52814 4.87516 5.02161 5.03612 5.17080 5.32578 5.33072 5.41050 5.50256 5.67172 5.83135 5.94759 6.12172 6.38682 6.55117 6.58130 6.64542 6.69015 6.70400 6.86015 7.06272 7.10220 7.18753 7.38101 7.53607 7.62010 7.68602 7.81818 7.86865 7.95840 8.23340 8.52695 8.75540 9.16867 10.01302 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.004429 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.970801 B = 6320.035956 C = 7767.477906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.577 5.577 3 C 0.532 3.468 4 O -0.485 6.485 5 C -0.166 4.166 6 C 0.115 3.885 7 H 0.140 0.860 8 N -0.715 5.715 9 C 0.604 3.396 10 O -0.540 6.540 11 C -0.020 4.020 12 C -0.157 4.157 13 C -0.136 4.136 14 C -0.088 4.088 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.048 4.048 18 C 0.113 3.887 19 N -0.266 5.266 20 C -0.379 4.379 21 H 0.106 0.894 22 C 0.061 3.939 23 N -0.814 5.814 24 Si 0.920 3.080 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.260 1.260 28 C 0.512 3.488 29 O -0.455 6.455 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.421 0.579 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 5.239 -5.459 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.322 5.322 3 C 0.321 3.679 4 O -0.357 6.357 5 C -0.206 4.206 6 C 0.005 3.995 7 H 0.158 0.842 8 N -0.379 5.379 9 C 0.395 3.605 10 O -0.417 6.417 11 C -0.134 4.134 12 C -0.185 4.185 13 C -0.141 4.141 14 C -0.107 4.107 15 C -0.178 4.178 16 C -0.170 4.170 17 C -0.068 4.068 18 C -0.002 4.002 19 N 0.070 4.930 20 C -0.506 4.506 21 H 0.123 0.877 22 C -0.154 4.154 23 N -0.442 5.442 24 Si 0.743 3.257 25 H -0.190 1.190 26 H -0.197 1.197 27 H -0.184 1.184 28 C 0.297 3.703 29 O -0.322 6.322 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.268 0.732 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.132 5.114 -5.904 8.096 hybrid contribution -0.697 1.010 0.786 1.458 sum -2.829 6.124 -5.118 8.468 Atomic orbital electron populations 1.21926 0.77260 1.04444 1.03798 1.46714 1.09708 1.09443 1.66309 1.20692 0.89883 0.83728 0.73560 1.90764 1.77779 1.21162 1.45998 1.22848 0.94366 0.95028 1.08332 1.21503 0.90188 0.93318 0.94453 0.84220 1.46648 1.58134 1.18285 1.14819 1.17315 0.76131 0.80161 0.86940 1.90751 1.58689 1.59567 1.32667 1.19951 1.11816 0.93445 0.88201 1.20423 1.07205 0.94943 0.95897 1.18048 1.07046 0.94741 0.94217 1.20052 0.99780 0.96770 0.94065 1.20286 1.05162 0.97207 0.95129 1.20609 1.04036 0.93533 0.98778 1.20171 0.96180 0.99138 0.91269 1.18296 0.99375 0.90289 0.92262 1.39887 1.38632 1.08247 1.06274 1.19440 1.39045 0.82359 1.09802 0.87680 1.25736 0.94643 1.00370 0.94670 1.69925 1.29872 1.34356 1.10053 0.86083 0.79803 0.80654 0.79180 1.19006 1.19651 1.18395 1.21562 0.90489 0.83912 0.74305 1.90784 1.77369 1.21109 1.42917 0.90941 0.89525 0.89461 0.85274 0.84833 0.73158 0.84849 0.87735 0.87929 0.87697 0.86166 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.58 59.84 0.63 1.36 16 2 N -0.58 -7.63 2.95 -122.73 -0.36 -8.00 16 3 C 0.53 6.75 8.07 -11.09 -0.09 6.66 16 4 O -0.49 -7.20 17.48 5.60 0.10 -7.10 16 5 C -0.17 -1.70 6.79 -26.94 -0.18 -1.89 16 6 C 0.12 1.60 3.46 -68.13 -0.24 1.37 16 7 H 0.14 1.80 7.53 -51.93 -0.39 1.41 16 8 N -0.72 -12.58 5.07 -55.25 -0.28 -12.86 16 9 C 0.60 12.83 7.77 -12.76 -0.10 12.73 16 10 O -0.54 -12.19 16.49 5.21 0.09 -12.10 16 11 C -0.02 -0.46 6.77 -82.25 -0.56 -1.02 16 12 C -0.16 -3.57 10.55 -39.02 -0.41 -3.98 16 13 C -0.14 -3.11 6.16 -106.89 -0.66 -3.77 16 14 C -0.09 -1.76 10.06 -39.52 -0.40 -2.16 16 15 C -0.16 -2.99 9.97 -39.95 -0.40 -3.39 16 16 C -0.15 -2.95 10.02 -39.50 -0.40 -3.34 16 17 C -0.05 -1.08 8.49 -39.41 -0.33 -1.42 16 18 C 0.11 2.71 6.04 -83.84 -0.51 2.21 16 19 N -0.27 -6.32 2.82 -56.08 -0.16 -6.48 16 20 C -0.38 -8.44 7.61 -15.01 -0.11 -8.55 16 21 H 0.11 2.09 6.50 -52.49 -0.34 1.75 16 22 C 0.06 1.33 5.12 -17.47 -0.09 1.24 16 23 N -0.81 -19.28 10.17 55.50 0.56 -18.72 16 24 Si 0.92 16.59 29.56 -169.99 -5.02 11.57 16 25 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 26 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 27 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 28 C 0.51 8.01 7.72 -11.08 -0.09 7.92 16 29 O -0.45 -8.82 17.48 5.61 0.10 -8.72 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.81 7.83 -51.93 -0.41 0.40 16 32 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 33 H 0.13 1.26 7.69 -51.93 -0.40 0.86 16 34 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.42 7.44 4.25 -40.82 -0.17 7.26 16 36 H 0.13 2.81 8.06 -52.49 -0.42 2.38 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 2.77 6.58 -52.48 -0.35 2.42 16 41 H 0.29 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -30.66 353.54 -7.71 -38.37 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -4.14 Total: 14.73 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.92 Total: 3.98 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.24 Total: -46.06 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: 0.28 Total: -27.92 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.02 Total: 11.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.66 -7.71 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594356247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.445 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds