Wall clock time and date at job start Wed Apr 1 2020 00:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33878 * 122.75883 * 2 1 4 4 O 1.21223 * 125.39709 * 359.97438 * 3 2 1 5 5 C 1.51311 * 109.20488 * 179.97438 * 3 2 1 6 6 C 1.54228 * 103.55722 * 359.97438 * 5 3 2 7 7 H 1.09000 * 110.60727 * 241.32631 * 6 5 3 8 8 N 1.46497 * 110.60453 * 118.51574 * 6 5 3 9 9 C 1.34775 * 120.00040 * 158.02003 * 8 6 5 10 10 O 1.21671 * 119.99869 * 5.13327 * 9 8 6 11 11 C 1.46896 * 120.00324 * 185.12609 * 9 8 6 12 12 C 1.36119 * 125.43844 * 186.29262 * 11 9 8 13 13 C 1.41696 * 107.75026 * 179.97438 * 12 11 9 14 14 C 1.40020 * 133.35079 * 179.97438 * 13 12 11 15 15 C 1.36574 * 119.83099 * 179.74328 * 14 13 12 16 16 C 1.38853 * 120.59805 * 0.55583 * 15 14 13 17 17 C 1.37848 * 120.63393 * 359.43717 * 16 15 14 18 18 C 1.39085 * 119.81438 * 0.27751 * 17 16 15 19 19 N 1.37833 * 133.16607 * 179.97438 * 18 17 16 20 20 C 1.36890 * 125.61869 * 0.05785 * 19 18 17 21 21 H 1.08005 * 120.00261 * 222.64883 * 20 19 18 22 22 C 1.39014 * 120.00090 * 42.65888 * 20 19 18 23 23 N 1.31347 * 119.99967 * 6.44297 * 22 20 19 24 24 Si 1.86800 * 119.99988 * 186.44574 * 22 20 19 25 25 H 1.48494 * 109.47374 * 54.99576 * 24 22 20 26 26 H 1.48495 * 109.47016 * 174.99868 * 24 22 20 27 27 H 1.48499 * 109.46974 * 294.99672 * 24 22 20 28 28 C 1.33871 * 122.76490 * 179.97438 * 2 1 3 29 29 O 1.21234 * 125.39595 * 0.04997 * 28 2 1 30 30 H 1.08998 * 109.47283 * 359.97161 * 1 2 3 31 31 H 1.08999 * 109.46963 * 119.97894 * 1 2 3 32 32 H 1.09003 * 109.46535 * 239.97522 * 1 2 3 33 33 H 1.09000 * 110.60597 * 241.48084 * 5 3 2 34 34 H 1.09006 * 110.60399 * 118.51888 * 5 3 2 35 35 H 0.97002 * 120.00189 * 338.01648 * 8 6 5 36 36 H 1.08000 * 126.12228 * 359.97438 * 12 11 9 37 37 H 1.07997 * 120.08259 * 0.02562 * 14 13 12 38 38 H 1.08002 * 119.70242 * 180.29222 * 15 14 13 39 39 H 1.08002 * 119.68284 * 179.71134 * 16 15 14 40 40 H 1.08008 * 120.09041 * 180.29279 * 17 16 15 41 41 H 0.96992 * 119.99868 * 184.99703 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1895 1.1259 0.0000 4 8 1.7384 2.2510 -0.0004 5 6 3.6605 0.7712 0.0006 6 6 3.6605 -0.7710 0.0017 7 1 4.1499 -1.1540 0.8972 8 7 4.3155 -1.2874 -1.2027 9 6 4.8188 -2.5376 -1.2127 10 8 4.6476 -3.2700 -0.2563 11 6 5.5738 -3.0162 -2.3784 12 6 6.0246 -4.2878 -2.5589 13 6 6.7004 -4.3340 -3.8035 14 6 7.3578 -5.3533 -4.5030 15 6 7.9242 -5.0880 -5.7171 16 6 7.8646 -3.8119 -6.2611 17 6 7.2229 -2.7921 -5.5915 18 6 6.6335 -3.0394 -4.3562 19 7 5.9390 -2.2474 -3.4672 20 6 5.6570 -0.9184 -3.6355 21 1 5.7641 -0.2345 -2.8065 22 6 5.2327 -0.4492 -4.8733 23 7 4.9806 -1.2958 -5.8454 24 14 5.0211 1.3854 -5.1543 25 1 6.2864 2.0867 -4.8190 26 1 4.6808 1.6320 -6.5785 27 1 3.9279 1.8958 -4.2885 28 6 2.1896 -1.1257 0.0005 29 8 1.7386 -2.2510 0.0001 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3632 -0.5142 0.8898 33 1 4.1472 1.1551 0.8972 34 1 4.1479 1.1547 -0.8958 35 1 4.3870 -0.7295 -1.9930 36 1 5.8910 -5.1137 -1.8758 37 1 7.4129 -6.3478 -4.0856 38 1 8.4267 -5.8769 -6.2571 39 1 8.3216 -3.6174 -7.2202 40 1 7.1777 -1.8038 -6.0249 41 1 4.7550 -0.9662 -6.7292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594356248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:27 Heat of formation + Delta-G solvation = -24.974814 kcal Electronic energy + Delta-G solvation = -29787.555062 eV Core-core repulsion = 25633.726634 eV Total energy + Delta-G solvation = -4153.828428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01562 -40.54050 -38.87750 -38.29303 -35.98914 -35.97411 -34.90813 -33.73286 -31.70907 -30.74459 -29.07543 -28.17058 -27.09809 -25.90951 -25.11372 -23.30198 -22.03169 -21.11600 -20.39930 -19.67389 -19.43074 -18.32028 -17.36105 -17.26621 -16.64835 -16.44359 -15.71539 -15.37136 -15.07935 -14.93560 -14.68316 -14.42841 -14.31370 -13.97288 -13.85863 -13.23541 -13.15669 -13.04553 -12.99639 -12.77954 -12.71962 -12.57388 -12.10055 -11.98987 -11.79159 -11.51205 -11.27184 -10.89975 -10.86246 -10.73622 -10.35203 -10.26263 -9.87243 -9.85488 -9.58768 -9.35521 -8.86998 -8.68076 -7.32240 -6.94934 -6.62256 -4.81866 1.39728 1.74185 2.37381 2.55395 2.69054 2.85289 2.85647 2.89342 3.04013 3.48968 3.58058 3.93965 4.08262 4.16028 4.24944 4.43983 4.57174 4.86902 5.01997 5.02486 5.16305 5.31667 5.32303 5.41136 5.49744 5.66338 5.81905 5.92343 6.10832 6.37678 6.51988 6.58542 6.62657 6.69129 6.70163 6.84037 7.04494 7.07787 7.18852 7.35584 7.51743 7.58965 7.69306 7.81507 7.85489 7.95048 8.21496 8.53728 8.76201 9.15789 10.01301 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.004354 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.913416 B = 6429.009516 C = 8017.733502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.577 5.577 3 C 0.533 3.467 4 O -0.486 6.486 5 C -0.166 4.166 6 C 0.118 3.882 7 H 0.137 0.863 8 N -0.717 5.717 9 C 0.602 3.398 10 O -0.535 6.535 11 C -0.022 4.022 12 C -0.158 4.158 13 C -0.134 4.134 14 C -0.086 4.086 15 C -0.160 4.160 16 C -0.146 4.146 17 C -0.052 4.052 18 C 0.109 3.891 19 N -0.261 5.261 20 C -0.379 4.379 21 H 0.108 0.892 22 C 0.057 3.943 23 N -0.813 5.813 24 Si 0.922 3.078 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.264 1.264 28 C 0.511 3.489 29 O -0.451 6.451 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.421 0.579 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 5.069 5.465 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.323 5.323 3 C 0.322 3.678 4 O -0.358 6.358 5 C -0.206 4.206 6 C 0.008 3.992 7 H 0.155 0.845 8 N -0.380 5.380 9 C 0.392 3.608 10 O -0.412 6.412 11 C -0.136 4.136 12 C -0.186 4.186 13 C -0.139 4.139 14 C -0.105 4.105 15 C -0.179 4.179 16 C -0.167 4.167 17 C -0.072 4.072 18 C -0.006 4.006 19 N 0.074 4.926 20 C -0.506 4.506 21 H 0.125 0.875 22 C -0.157 4.157 23 N -0.441 5.441 24 Si 0.745 3.255 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.189 1.189 28 C 0.296 3.704 29 O -0.318 6.318 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.269 0.731 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.463 4.901 5.920 8.071 hybrid contribution -0.399 1.085 -0.832 1.424 sum -2.862 5.986 5.088 8.361 Atomic orbital electron populations 1.21928 0.77289 1.04535 1.03691 1.46735 1.09688 1.09457 1.66370 1.20692 0.89910 0.83743 0.73470 1.90762 1.77725 1.21175 1.46144 1.22855 0.94373 0.94991 1.08400 1.21496 0.90271 0.93281 0.94165 0.84504 1.46640 1.58776 1.17268 1.15341 1.17325 0.77273 0.80523 0.85660 1.90771 1.59632 1.55308 1.35482 1.19922 1.08720 0.92307 0.92652 1.20409 1.05660 0.94884 0.97616 1.18029 1.05507 0.94083 0.96287 1.20064 0.98558 0.96972 0.94867 1.20283 1.04271 0.96539 0.96785 1.20606 1.03252 0.93229 0.99622 1.20129 0.95798 0.99187 0.92076 1.18212 0.98084 0.90271 0.94027 1.39901 1.33580 1.06927 1.12165 1.19512 1.49495 0.82082 0.99491 0.87464 1.25696 0.93439 1.00934 0.95672 1.69929 1.35814 1.35618 1.02744 0.86053 0.79897 0.80566 0.79000 1.18519 1.19744 1.18868 1.21554 0.90432 0.83898 0.74509 1.90794 1.77338 1.21059 1.42587 0.88938 0.90503 0.90523 0.84844 0.85191 0.73140 0.84860 0.87703 0.87896 0.87679 0.86547 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.65 59.85 0.64 1.35 16 2 N -0.58 -7.50 2.95 -122.72 -0.36 -7.86 16 3 C 0.53 6.65 8.08 -11.09 -0.09 6.56 16 4 O -0.49 -7.12 17.23 5.61 0.10 -7.02 16 5 C -0.17 -1.70 6.79 -26.94 -0.18 -1.88 16 6 C 0.12 1.62 3.36 -68.14 -0.23 1.39 16 7 H 0.14 1.74 7.72 -51.93 -0.40 1.34 16 8 N -0.72 -12.53 4.92 -55.25 -0.27 -12.80 16 9 C 0.60 12.76 7.76 -12.76 -0.10 12.66 16 10 O -0.54 -12.16 16.60 5.21 0.09 -12.07 16 11 C -0.02 -0.50 6.77 -82.25 -0.56 -1.06 16 12 C -0.16 -3.58 10.55 -39.02 -0.41 -3.99 16 13 C -0.13 -3.07 6.16 -106.89 -0.66 -3.73 16 14 C -0.09 -1.71 10.06 -39.51 -0.40 -2.11 16 15 C -0.16 -2.99 9.97 -39.95 -0.40 -3.39 16 16 C -0.15 -2.87 10.02 -39.50 -0.40 -3.27 16 17 C -0.05 -1.17 8.48 -39.41 -0.33 -1.50 16 18 C 0.11 2.61 6.04 -83.84 -0.51 2.11 16 19 N -0.26 -6.19 2.82 -56.08 -0.16 -6.35 16 20 C -0.38 -8.36 7.69 -15.01 -0.12 -8.47 16 21 H 0.11 2.11 6.44 -52.48 -0.34 1.77 16 22 C 0.06 1.25 4.83 -17.47 -0.08 1.16 16 23 N -0.81 -19.16 10.37 55.50 0.58 -18.59 16 24 Si 0.92 16.41 29.56 -169.99 -5.03 11.39 16 25 H -0.26 -4.55 7.11 56.52 0.40 -4.14 16 26 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 27 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 28 C 0.51 7.90 7.72 -11.09 -0.09 7.81 16 29 O -0.45 -8.70 17.68 5.60 0.10 -8.60 16 30 H 0.09 0.88 7.41 -51.93 -0.38 0.50 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.13 1.28 7.67 -51.93 -0.40 0.88 16 35 H 0.42 7.44 4.42 -40.82 -0.18 7.26 16 36 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.12 2.64 6.49 -52.48 -0.34 2.30 16 41 H 0.29 6.30 8.31 -40.82 -0.34 5.96 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -30.65 353.50 -7.68 -38.33 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -4.14 Total: 14.59 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.91 Total: 3.65 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.22 Total: -45.60 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: 0.28 Total: -27.69 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.65 -7.68 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594356248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.353 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds