Wall clock time and date at job start Tue Mar 31 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35534 * 125.68022 * 2 1 4 4 C 1.35445 * 108.87422 * 179.83124 * 3 2 1 5 5 S 1.76201 * 126.07036 * 180.16758 * 4 3 2 6 6 O 1.42100 * 106.39884 * 23.82259 * 5 4 3 7 7 O 1.42099 * 106.40450 * 156.74276 * 5 4 3 8 8 N 1.65600 * 107.21908 * 270.28520 * 5 4 3 9 9 C 1.46928 * 120.62600 * 269.72135 * 8 5 4 10 10 C 1.52767 * 109.00135 * 233.57917 * 9 8 5 11 11 C 1.53037 * 109.38725 * 305.58857 * 10 9 8 12 12 C 1.53040 * 109.53648 * 61.23941 * 11 10 9 13 13 H 1.09005 * 109.52242 * 58.60652 * 12 11 10 14 14 C 1.50703 * 109.49756 * 178.68222 * 12 11 10 15 15 H 1.08000 * 119.99712 * 119.83921 * 14 12 11 16 16 C 1.37872 * 120.00232 * 299.84087 * 14 12 11 17 17 N 1.31524 * 120.00112 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00283 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46896 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46964 * 120.00109 * 18 16 14 21 21 H 1.48496 * 109.47442 * 240.00033 * 18 16 14 22 22 C 1.46919 * 120.63040 * 89.99567 * 8 5 4 23 23 C 1.39843 * 107.86515 * 0.42841 * 4 3 2 24 24 C 1.37647 * 125.67822 * 180.30884 * 2 1 3 25 25 C 1.46685 * 126.23324 * 359.97438 * 24 2 1 26 26 N 1.34775 * 119.99924 * 185.00442 * 25 24 2 27 27 O 1.21692 * 120.00034 * 5.01277 * 25 24 2 28 28 H 1.09004 * 109.47261 * 264.11946 * 1 2 3 29 29 H 1.08997 * 109.47224 * 144.12046 * 1 2 3 30 30 H 1.08997 * 109.47583 * 24.11646 * 1 2 3 31 31 H 1.08003 * 125.55490 * 359.96505 * 3 2 1 32 32 H 1.08992 * 109.58926 * 353.41170 * 9 8 5 33 33 H 1.09000 * 109.58621 * 113.84628 * 9 8 5 34 34 H 1.09004 * 109.55997 * 185.55154 * 10 9 8 35 35 H 1.08995 * 109.35896 * 65.50577 * 10 9 8 36 36 H 1.09004 * 109.46178 * 301.22060 * 11 10 9 37 37 H 1.08997 * 109.45173 * 181.25912 * 11 10 9 38 38 H 0.96993 * 120.00119 * 179.97438 * 17 16 14 39 39 H 1.09011 * 109.59051 * 246.15590 * 22 8 5 40 40 H 1.08999 * 109.58831 * 6.58259 * 22 8 5 41 41 H 1.07991 * 126.45815 * 179.77522 * 23 4 3 42 42 H 0.96998 * 120.00548 * 5.05546 * 26 25 24 43 43 H 0.97002 * 120.00220 * 185.04812 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 0.0038 5 16 4.9570 1.7727 0.0095 6 8 4.5224 3.0086 0.5600 7 8 6.0311 1.0158 0.5504 8 7 5.3482 2.0766 -1.5707 9 6 6.2928 1.2094 -2.2880 10 6 7.4033 2.0712 -2.8862 11 6 6.7828 3.1734 -3.7477 12 6 5.8939 4.0642 -2.8768 13 1 6.4886 4.4967 -2.0721 14 6 5.3090 5.1683 -3.7193 15 1 4.2377 5.2610 -3.8199 16 6 6.1414 6.0602 -4.3616 17 7 7.4461 5.9470 -4.2396 18 14 5.4164 7.4284 -5.4065 19 1 3.9343 7.3376 -5.3818 20 1 5.8404 8.7437 -4.8632 21 1 5.8979 7.2918 -6.8046 22 6 4.7620 3.2219 -2.2801 23 6 3.5780 -0.6889 -0.0037 24 6 2.2678 -1.1181 -0.0060 25 6 1.8123 -2.5124 -0.0130 26 7 2.7084 -3.5145 0.0833 27 8 0.6254 -2.7644 -0.1060 28 1 -0.3634 -0.1053 1.0223 29 1 -0.3633 -0.8326 -0.6023 30 1 -0.3634 0.9379 -0.4199 31 1 1.9081 2.1235 -0.0005 32 1 6.7253 0.4880 -1.5948 33 1 5.7712 0.6836 -3.0877 34 1 8.0546 1.4511 -3.5024 35 1 7.9841 2.5219 -2.0815 36 1 6.1820 2.7222 -4.5374 37 1 7.5749 3.7752 -4.1930 38 1 8.0317 6.5741 -4.6918 39 1 4.1129 2.8635 -3.0792 40 1 4.1847 3.8277 -1.5817 41 1 4.4582 -1.3144 -0.0065 42 1 3.6460 -3.3143 0.2309 43 1 2.4158 -4.4360 0.0052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594802928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:25 Heat of formation + Delta-G solvation = -68.476274 kcal Electronic energy + Delta-G solvation = -28268.047853 eV Core-core repulsion = 24247.777011 eV Total energy + Delta-G solvation = -4020.270842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75921 -39.13841 -37.66652 -36.85205 -35.43169 -34.43569 -33.27892 -33.04367 -31.07086 -30.06518 -29.72414 -27.04506 -25.09268 -23.63868 -23.53557 -21.72714 -21.61951 -20.12503 -19.44360 -18.89097 -17.77970 -17.20500 -17.07077 -16.31923 -16.15414 -15.98061 -15.55260 -15.32543 -14.60924 -14.59270 -14.46023 -13.94708 -13.72927 -13.43370 -13.25351 -12.95138 -12.80543 -12.76683 -12.70749 -12.55538 -12.11563 -11.72182 -11.64215 -11.29117 -11.03910 -10.97788 -10.81573 -10.67676 -10.49372 -10.17570 -10.14905 -9.91728 -9.76556 -9.48441 -9.30774 -8.80623 -8.74170 -8.42039 -8.13341 -5.99363 -4.06607 0.79806 1.09088 1.84068 2.30184 2.95972 3.25071 3.29636 3.38028 3.40815 3.52189 4.18242 4.31313 4.43362 4.50217 4.59363 4.77832 4.90628 5.07002 5.17993 5.26821 5.29213 5.34059 5.60761 5.75031 5.84751 6.08493 6.13592 6.27753 6.37432 6.38559 6.43458 6.51061 6.65919 6.68616 6.73233 6.90828 6.94035 7.07512 7.26648 7.47778 7.73151 7.81452 7.98913 8.12074 8.41313 8.97031 9.58032 11.06115 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.003169 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.097959 B = 8833.787558 C = 9400.542330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.403 5.403 3 C 0.144 3.856 4 C -0.748 4.748 5 S 2.712 3.288 6 O -0.961 6.961 7 O -0.968 6.968 8 N -0.990 5.990 9 C 0.125 3.875 10 C -0.132 4.132 11 C -0.110 4.110 12 C 0.041 3.959 13 H 0.033 0.967 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.125 3.875 23 C -0.047 4.047 24 C -0.069 4.069 25 C 0.599 3.401 26 N -0.842 5.842 27 O -0.553 6.553 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.191 0.809 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.094 0.906 38 H 0.260 0.740 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.159 0.841 42 H 0.407 0.593 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 -16.586 7.246 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.074 5.074 3 C 0.001 3.999 4 C -0.840 4.840 5 S 2.802 3.198 6 O -0.951 6.951 7 O -0.958 6.958 8 N -0.830 5.830 9 C 0.000 4.000 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.051 0.949 14 C -0.553 4.553 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.001 3.999 23 C -0.073 4.073 24 C -0.181 4.181 25 C 0.386 3.614 26 N -0.406 5.406 27 O -0.432 6.432 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.207 0.793 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.176 0.824 42 H 0.236 0.764 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.434 -16.281 7.871 20.396 hybrid contribution -0.554 0.095 -0.936 1.091 sum -9.987 -16.186 6.935 20.244 Atomic orbital electron populations 1.22413 0.75311 1.05568 1.04692 1.44178 1.07345 1.05047 1.50797 1.21962 0.88642 0.92275 0.97061 1.31459 1.15837 1.09539 1.27125 1.01253 0.72994 0.72915 0.72678 1.93558 1.83243 1.41875 1.76422 1.93510 1.51984 1.73349 1.76945 1.57597 1.55923 1.38269 1.31215 1.21317 0.90445 0.92183 0.96088 1.21884 0.96690 0.98478 1.00074 1.21583 1.01065 0.94924 0.97213 1.18953 0.91844 0.92074 0.95034 0.94922 1.21125 0.93015 1.11687 1.29446 0.92432 1.24943 0.94838 0.97535 0.96558 1.69890 1.02281 1.36888 1.43532 0.86546 0.79306 0.82107 0.80041 1.19808 1.21070 1.21142 1.21833 0.97699 0.84880 0.95509 1.20970 0.94992 0.92742 0.98567 1.20079 0.90421 0.87731 1.19838 1.16871 0.85403 0.83826 0.75321 1.43450 1.11827 1.09064 1.76213 1.90832 1.16200 1.84992 1.51174 0.90040 0.87765 0.89009 0.79254 0.90327 0.92316 0.92556 0.92243 0.94669 0.88791 0.93035 0.92652 0.90313 0.82391 0.76399 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.49 59.85 0.63 1.13 16 2 N -0.40 -4.50 3.16 -120.24 -0.38 -4.88 16 3 C 0.14 1.71 11.11 -16.91 -0.19 1.52 16 4 C -0.75 -10.02 6.17 -39.98 -0.25 -10.26 16 5 S 2.71 44.46 5.87 -107.50 -0.63 43.83 16 6 O -0.96 -18.33 16.44 -57.17 -0.94 -19.27 16 7 O -0.97 -17.21 16.45 -57.17 -0.94 -18.15 16 8 N -0.99 -17.05 3.30 -113.77 -0.37 -17.42 16 9 C 0.13 1.98 6.45 -3.93 -0.03 1.95 16 10 C -0.13 -2.41 6.06 -26.83 -0.16 -2.57 16 11 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 12 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 13 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.51 -13.48 8.56 -34.44 -0.29 -13.77 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 18 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.12 2.44 5.70 -3.71 -0.02 2.42 16 23 C -0.05 -0.54 10.14 -39.12 -0.40 -0.94 16 24 C -0.07 -0.80 6.89 -81.98 -0.56 -1.36 16 25 C 0.60 6.43 8.05 -12.85 -0.10 6.32 16 26 N -0.84 -5.47 8.85 30.26 0.27 -5.20 16 27 O -0.55 -7.38 15.61 5.20 0.08 -7.30 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.96 6.54 -51.93 -0.34 0.62 16 30 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.08 1.10 6.91 -51.93 -0.36 0.75 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 2.37 6.05 -51.93 -0.31 2.06 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 41 H 0.16 1.40 7.48 -52.49 -0.39 1.00 16 42 H 0.41 1.77 7.77 -40.82 -0.32 1.45 16 43 H 0.41 1.94 8.93 -40.82 -0.36 1.57 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -34.96 363.83 -9.43 -44.39 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.79 Total: 2.62 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -1.81 Total: -15.76 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.14 Total: -51.53 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.80 Total: -44.72 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 44.46 SS G_CDS: -0.63 Total: 43.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.96 -9.43 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.089 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds