Wall clock time and date at job start Tue Mar 31 2020 23:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35527 * 125.67879 * 2 1 4 4 C 1.35456 * 108.87105 * 179.97438 * 3 2 1 5 5 S 1.76200 * 126.06783 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40405 * 203.54138 * 5 4 3 7 7 O 1.42104 * 106.40111 * 336.45505 * 5 4 3 8 8 N 1.65597 * 107.22348 * 89.99774 * 5 4 3 9 9 C 1.46917 * 120.63073 * 89.99591 * 8 5 4 10 10 C 1.53197 * 108.77483 * 126.37189 * 9 8 5 11 11 C 1.53041 * 109.31011 * 54.63635 * 10 9 8 12 12 C 1.53039 * 109.53892 * 298.63571 * 11 10 9 13 13 H 1.08998 * 109.49365 * 301.41199 * 12 11 10 14 14 C 1.50702 * 109.49444 * 181.34995 * 12 11 10 15 15 H 1.08001 * 120.00142 * 275.00766 * 14 12 11 16 16 C 1.37878 * 120.00025 * 95.02091 * 14 12 11 17 17 N 1.31511 * 120.00118 * 184.84320 * 16 14 12 18 18 Si 1.86797 * 120.00081 * 4.83180 * 16 14 12 19 19 H 1.48501 * 109.47044 * 84.70608 * 18 16 14 20 20 H 1.48499 * 109.47360 * 204.70666 * 18 16 14 21 21 H 1.48504 * 109.47410 * 324.70904 * 18 16 14 22 22 C 1.46928 * 120.63128 * 269.72215 * 8 5 4 23 23 C 1.39834 * 107.86766 * 359.97438 * 4 3 2 24 24 C 1.37657 * 125.67651 * 179.69715 * 2 1 3 25 25 C 1.46677 * 126.23019 * 0.02562 * 24 2 1 26 26 N 1.34782 * 119.99498 * 185.49186 * 25 24 2 27 27 O 1.21689 * 120.00306 * 5.49078 * 25 24 2 28 28 H 1.09001 * 109.47630 * 85.99771 * 1 2 3 29 29 H 1.09000 * 109.46799 * 325.99672 * 1 2 3 30 30 H 1.09007 * 109.47467 * 206.00252 * 1 2 3 31 31 H 1.08000 * 125.56812 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.59295 * 246.16122 * 9 8 5 33 33 H 1.08998 * 109.58960 * 6.58726 * 9 8 5 34 34 H 1.08999 * 109.49997 * 174.58565 * 10 9 8 35 35 H 1.08995 * 109.49700 * 294.68412 * 10 9 8 36 36 H 1.09001 * 109.45779 * 58.65816 * 11 10 9 37 37 H 1.09001 * 109.45606 * 178.62820 * 11 10 9 38 38 H 0.97001 * 120.00417 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.58674 * 353.41664 * 22 8 5 40 40 H 1.09003 * 109.58398 * 113.83602 * 22 8 5 41 41 H 1.07993 * 126.46240 * 180.02562 * 23 4 3 42 42 H 0.96999 * 120.00286 * 5.05953 * 26 25 24 43 43 H 0.96998 * 119.99506 * 185.05862 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7092 0.0006 5 16 4.9570 1.7727 0.0014 6 8 6.0315 1.0185 -0.5426 7 8 4.5229 3.0114 -0.5431 8 7 5.3471 2.0684 1.5834 9 6 6.2864 1.1940 2.2988 10 6 7.4012 2.0555 2.9005 11 6 6.7803 3.1536 3.7670 12 6 5.8925 4.0492 2.8999 13 1 6.4884 4.4850 2.0980 14 6 5.3080 5.1497 3.7474 15 1 4.4034 4.9749 4.3108 16 6 5.9280 6.3800 3.8033 17 7 5.4733 7.3092 4.6152 18 14 7.4142 6.7267 2.7261 19 1 6.9598 7.1688 1.3832 20 1 8.2370 7.7957 3.3469 21 1 8.2272 5.4914 2.5916 22 6 4.7651 3.2136 2.2965 23 6 3.5780 -0.6889 0.0015 24 6 2.2678 -1.1182 0.0059 25 6 1.8123 -2.5124 0.0128 26 7 2.7074 -3.5132 0.1298 27 8 0.6262 -2.7656 -0.0872 28 1 -0.3634 0.0717 -1.0251 29 1 -0.3633 0.8520 0.5747 30 1 -0.3634 -0.9237 0.4506 31 1 1.9082 2.1235 -0.0004 32 1 5.7611 0.6674 3.0955 33 1 6.7166 0.4733 1.6035 34 1 8.0516 1.4322 3.5141 35 1 7.9828 2.5100 2.0986 36 1 6.1788 2.6986 4.5540 37 1 7.5723 3.7531 4.2160 38 1 5.9096 8.1746 4.6549 39 1 4.1918 3.8250 1.5996 40 1 4.1131 2.8550 3.0930 41 1 4.4582 -1.3145 0.0026 42 1 3.6437 -3.3111 0.2831 43 1 2.4154 -4.4356 0.0608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594802929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:28 Heat of formation + Delta-G solvation = -68.091457 kcal Electronic energy + Delta-G solvation = -28353.561061 eV Core-core repulsion = 24333.306906 eV Total energy + Delta-G solvation = -4020.254155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79413 -39.17282 -37.91633 -36.93824 -35.51717 -34.47235 -33.17632 -33.06416 -31.52051 -30.51514 -29.75803 -27.07097 -25.20722 -23.86677 -23.62860 -21.76881 -21.59062 -20.16785 -19.45738 -18.94154 -17.99594 -17.34183 -17.11817 -16.68108 -16.35990 -16.01164 -15.65292 -15.38521 -14.71131 -14.45794 -14.41246 -14.10246 -13.82302 -13.74711 -13.26146 -12.99448 -12.95405 -12.80379 -12.72586 -12.63912 -12.51730 -11.86790 -11.78682 -11.46658 -11.21812 -11.10686 -11.00775 -10.70258 -10.52067 -10.30346 -10.17715 -10.00031 -9.73035 -9.61814 -9.45905 -9.02424 -8.77728 -8.55741 -8.37911 -6.09835 -4.09681 0.70668 1.06150 1.79844 2.27262 2.92336 3.21921 3.33012 3.40429 3.42101 3.43851 4.09233 4.27441 4.43305 4.46797 4.58694 4.74513 4.88656 5.01448 5.12642 5.15520 5.25060 5.25972 5.48558 5.53990 5.66259 5.85687 5.98094 6.10637 6.13043 6.28701 6.35396 6.39983 6.44307 6.46646 6.60499 6.70142 6.78021 6.87664 6.93388 7.06398 7.28596 7.43618 7.76217 7.78298 8.47590 8.94062 9.53824 11.02926 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.003315 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.651801 B = 8445.180968 C = 8830.821940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.402 5.402 3 C 0.145 3.855 4 C -0.749 4.749 5 S 2.710 3.290 6 O -0.967 6.967 7 O -0.959 6.959 8 N -0.995 5.995 9 C 0.125 3.875 10 C -0.136 4.136 11 C -0.109 4.109 12 C 0.006 3.994 13 H 0.036 0.964 14 C -0.512 4.512 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.263 1.263 22 C 0.130 3.870 23 C -0.048 4.048 24 C -0.068 4.068 25 C 0.599 3.401 26 N -0.841 5.841 27 O -0.552 6.552 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.191 0.809 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.158 0.842 42 H 0.406 0.594 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -19.786 -7.884 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.073 5.073 3 C 0.002 3.998 4 C -0.840 4.840 5 S 2.800 3.200 6 O -0.958 6.958 7 O -0.949 6.949 8 N -0.834 5.834 9 C 0.000 4.000 10 C -0.175 4.175 11 C -0.147 4.147 12 C -0.014 4.014 13 H 0.054 0.946 14 C -0.551 4.551 15 H 0.093 0.907 16 C -0.127 4.127 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.199 1.199 20 H -0.217 1.217 21 H -0.187 1.187 22 C 0.006 3.994 23 C -0.074 4.074 24 C -0.180 4.180 25 C 0.386 3.614 26 N -0.405 5.405 27 O -0.431 6.431 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.208 0.792 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.176 0.824 42 H 0.236 0.764 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.785 -19.368 -8.637 21.982 hybrid contribution 0.551 -0.305 -0.107 0.639 sum -5.234 -19.674 -8.744 22.157 Atomic orbital electron populations 1.22469 0.75245 1.06135 1.04456 1.44187 1.07399 1.05016 1.50649 1.21976 0.88612 0.92375 0.96879 1.31382 1.15750 1.09482 1.27396 1.01324 0.73070 0.72980 0.72632 1.93513 1.52034 1.73463 1.76758 1.93571 1.83207 1.41647 1.76494 1.57743 1.56403 1.38116 1.31187 1.21366 0.90250 0.92018 0.96387 1.21986 0.97059 0.98484 1.00019 1.21785 0.99223 0.95715 0.97999 1.19355 0.93083 0.93895 0.95095 0.94617 1.20876 1.11894 0.94810 1.27498 0.90698 1.25022 0.96804 0.96057 0.94865 1.69895 1.41444 1.05317 1.36950 0.86929 0.83552 0.78235 0.81333 1.19866 1.21652 1.18735 1.21735 0.97280 0.84459 0.95876 1.20955 0.94999 0.92695 0.98716 1.20085 0.90423 0.87752 1.19730 1.16871 0.85395 0.83826 0.75336 1.43447 1.11982 1.09035 1.76061 1.90827 1.16226 1.84891 1.51187 0.89919 0.89102 0.87436 0.79166 0.91867 0.89971 0.91944 0.92171 0.92690 0.92697 0.92588 0.89567 0.92104 0.82406 0.76418 0.75844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.65 59.84 0.64 1.11 16 2 N -0.40 -4.41 3.16 -120.23 -0.38 -4.79 16 3 C 0.15 1.69 11.13 -16.91 -0.19 1.50 16 4 C -0.75 -9.67 6.17 -39.98 -0.25 -9.92 16 5 S 2.71 42.67 5.87 -107.50 -0.63 42.04 16 6 O -0.97 -16.44 16.46 -57.17 -0.94 -17.38 16 7 O -0.96 -17.90 16.43 -57.17 -0.94 -18.84 16 8 N -0.99 -15.99 3.30 -113.77 -0.37 -16.36 16 9 C 0.13 1.76 6.48 -3.71 -0.02 1.73 16 10 C -0.14 -2.16 6.08 -26.61 -0.16 -2.32 16 11 C -0.11 -2.12 5.15 -26.69 -0.14 -2.26 16 12 C 0.01 0.14 1.89 -91.88 -0.17 -0.03 16 13 H 0.04 0.84 5.30 -51.93 -0.28 0.57 16 14 C -0.51 -13.58 8.87 -34.44 -0.31 -13.88 16 15 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 16 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 18 Si 0.87 21.37 26.98 -169.99 -4.59 16.78 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.14 6.83 56.52 0.39 -5.75 16 22 C 0.13 2.43 5.72 -3.94 -0.02 2.41 16 23 C -0.05 -0.53 10.14 -39.12 -0.40 -0.93 16 24 C -0.07 -0.76 6.88 -81.98 -0.56 -1.33 16 25 C 0.60 6.23 8.04 -12.85 -0.10 6.13 16 26 N -0.84 -5.17 8.85 30.26 0.27 -4.90 16 27 O -0.55 -7.22 15.48 5.20 0.08 -7.14 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.98 6.20 -51.93 -0.32 0.66 16 31 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.02 6.92 -51.93 -0.36 0.66 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.16 1.30 7.49 -52.49 -0.39 0.91 16 42 H 0.41 1.59 7.78 -40.82 -0.32 1.27 16 43 H 0.41 1.81 8.93 -40.82 -0.36 1.44 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -36.23 363.30 -8.81 -45.04 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.77 Total: 1.80 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.78 Total: -15.78 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.29 Total: -51.98 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -1.80 Total: -43.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.59 Total: 16.78 kcal Atomic # 16 Polarization: 42.67 SS G_CDS: -0.63 Total: 42.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.23 -8.81 -45.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.050 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds