Wall clock time and date at job start Tue Mar 31 2020 23:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99675 * 2 1 4 4 N 1.34771 * 119.99948 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99709 * 185.05631 * 4 2 1 6 6 H 1.08999 * 109.46976 * 182.98159 * 5 4 2 7 7 C 1.53006 * 109.47025 * 62.98833 * 5 4 2 8 8 C 1.50700 * 109.47361 * 64.99958 * 7 5 4 9 9 O 1.20833 * 119.99856 * 359.97438 * 8 7 5 10 10 O 1.34228 * 120.00059 * 180.02562 * 8 7 5 11 11 C 1.45204 * 117.00135 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46790 * 330.00467 * 11 10 8 13 13 C 1.53005 * 109.46935 * 89.99642 * 11 10 8 14 14 C 1.50695 * 109.47202 * 209.99778 * 11 10 8 15 15 H 1.08001 * 119.99701 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00120 * 179.97438 * 14 11 10 17 17 N 1.31523 * 119.99715 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00229 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47401 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47394 * 120.00295 * 18 16 14 21 21 H 1.48502 * 109.47149 * 240.00020 * 18 16 14 22 22 C 1.50692 * 109.47559 * 302.98747 * 5 4 2 23 23 C 1.38224 * 119.99151 * 105.87054 * 22 5 4 24 24 C 1.38191 * 120.05315 * 180.02562 * 23 22 5 25 25 C 1.38495 * 120.02433 * 0.02562 * 24 23 22 26 26 F 1.35094 * 120.01244 * 180.02562 * 25 24 23 27 27 C 1.38394 * 119.97391 * 359.97438 * 25 24 23 28 28 C 1.38447 * 119.95211 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.01193 * 179.97438 * 28 27 25 30 30 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47135 * 300.00076 * 1 2 3 32 32 H 1.09002 * 109.47806 * 60.00162 * 1 2 3 33 33 H 0.96996 * 120.00558 * 5.05019 * 4 2 1 34 34 H 1.08996 * 109.47012 * 184.99767 * 7 5 4 35 35 H 1.09006 * 109.47071 * 304.99928 * 7 5 4 36 36 H 1.09002 * 109.46903 * 180.02562 * 13 11 10 37 37 H 1.09005 * 109.47319 * 300.00293 * 13 11 10 38 38 H 1.09001 * 109.46959 * 60.00041 * 13 11 10 39 39 H 0.97001 * 119.99728 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.97763 * 0.02835 * 23 22 5 41 41 H 1.08002 * 119.98590 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.02555 * 179.72224 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6416 -1.1696 0.1113 6 1 4.0097 -2.1931 0.0401 7 6 4.0509 -0.5732 1.4596 8 6 3.5644 -1.4656 2.5722 9 8 2.9526 -2.4749 2.3134 10 8 3.8098 -1.1387 3.8507 11 6 3.3109 -2.0445 4.8701 12 1 2.4065 -2.5345 4.5096 13 6 4.3745 -3.1002 5.1789 14 6 2.9962 -1.2672 6.1222 15 1 3.1548 -0.1993 6.1490 16 6 2.5049 -1.9193 7.2332 17 7 2.3113 -3.2198 7.2003 18 14 2.1141 -0.9558 8.7850 19 1 2.4182 0.4810 8.5654 20 1 0.6750 -1.1127 9.1160 21 1 2.9391 -1.4698 9.9077 22 6 4.2322 -0.3447 -1.0029 23 6 4.7543 0.9066 -0.7342 24 6 5.2957 1.6644 -1.7551 25 6 5.3152 1.1710 -3.0491 26 9 5.8450 1.9118 -4.0468 27 6 4.7928 -0.0817 -3.3193 28 6 4.2516 -0.8405 -2.2955 29 9 3.7407 -2.0633 -2.5581 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3635 0.5138 -0.8900 33 1 1.6988 -2.0055 -0.0748 34 1 5.1369 -0.4930 1.5067 35 1 3.6083 0.4171 1.5682 36 1 3.9998 -3.7804 5.9438 37 1 4.6021 -3.6624 4.2732 38 1 5.2790 -2.6102 5.5393 39 1 1.9652 -3.6785 7.9818 40 1 4.7392 1.2925 0.2745 41 1 5.7038 2.6418 -1.5439 42 1 4.8035 -0.4655 -4.3288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744136088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:36 Heat of formation + Delta-G solvation = -191.775985 kcal Electronic energy + Delta-G solvation = -30073.489963 eV Core-core repulsion = 25461.739307 eV Total energy + Delta-G solvation = -4611.750656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.23812 -49.20298 -40.61692 -39.26652 -38.65232 -36.09992 -35.00859 -33.30865 -32.43344 -30.96766 -30.06602 -29.51146 -28.87042 -25.37745 -24.97709 -23.42536 -22.24511 -21.51934 -20.21862 -19.39016 -18.49955 -17.70239 -17.25727 -17.01138 -16.66219 -16.38875 -16.17741 -15.93732 -15.55341 -15.41664 -15.20715 -15.12751 -14.80814 -14.55712 -14.41743 -13.90686 -13.72941 -13.24739 -12.90583 -12.72034 -12.57126 -12.40112 -12.26270 -12.09062 -12.03861 -11.70192 -11.68586 -11.37537 -11.19765 -11.10398 -10.87308 -10.39803 -10.31693 -9.94910 -9.70090 -9.57261 -9.24438 -9.19655 -8.93740 -8.79977 -8.53430 -6.22537 -4.29282 0.67588 0.82428 2.62671 2.93073 2.99532 3.20877 3.27635 3.32046 3.41917 3.51696 3.63646 4.17398 4.26122 4.31674 4.45388 4.60174 4.75070 4.89354 4.96689 5.09616 5.11107 5.21396 5.38061 5.42334 5.53425 5.61394 5.69669 5.73953 5.74513 5.80241 5.90835 6.05571 6.36983 6.52662 6.59076 6.83605 6.86501 7.12412 7.51032 7.56256 7.68200 7.89176 8.10021 8.20652 8.58409 8.84497 9.36556 10.84869 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018042 B = 0.002709 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.579442 B =10333.148866 C =10440.336115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.543 6.543 4 N -0.712 5.712 5 C 0.208 3.792 6 H 0.111 0.889 7 C -0.139 4.139 8 C 0.457 3.543 9 O -0.522 6.522 10 O -0.356 6.356 11 C 0.216 3.784 12 H 0.046 0.954 13 C -0.155 4.155 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.911 3.089 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.135 4.135 23 C -0.018 4.018 24 C -0.166 4.166 25 C 0.130 3.870 26 F -0.134 7.134 27 C -0.200 4.200 28 C 0.142 3.858 29 F -0.129 7.129 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.015 0.985 38 H 0.037 0.963 39 H 0.266 0.734 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 5.557 -19.647 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.421 6.421 4 N -0.364 5.364 5 C 0.102 3.898 6 H 0.129 0.871 7 C -0.178 4.178 8 C 0.300 3.700 9 O -0.413 6.413 10 O -0.272 6.272 11 C 0.164 3.836 12 H 0.064 0.936 13 C -0.212 4.212 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.137 4.137 23 C -0.036 4.036 24 C -0.185 4.185 25 C 0.110 3.890 26 F -0.113 7.113 27 C -0.220 4.220 28 C 0.122 3.878 29 F -0.107 7.107 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.246 0.754 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.788 5.814 -19.563 20.598 hybrid contribution -0.529 -0.275 0.559 0.817 sum 2.259 5.539 -19.004 19.924 Atomic orbital electron populations 1.21850 0.91835 1.04372 1.05090 1.20838 0.90702 0.83477 0.74955 1.90669 1.70501 1.31314 1.49606 1.46032 1.06264 1.09494 1.74605 1.19349 0.80863 0.99453 0.90091 0.87103 1.21892 1.03948 1.01261 0.90669 1.23086 0.77066 0.84669 0.85202 1.90564 1.38901 1.26921 1.84891 1.86489 1.71700 1.54000 1.15013 1.20628 0.93423 0.86785 0.82757 0.93617 1.22163 0.98828 0.99792 1.00449 1.21074 1.43961 0.95180 0.95671 0.91282 1.24887 0.95024 0.95142 0.98938 1.69910 1.44705 1.07713 1.30395 0.86227 0.78035 0.80047 0.81894 1.19439 1.20745 1.20687 1.20059 1.03193 0.97258 0.93214 1.20924 0.91475 0.91042 1.00200 1.21222 1.04055 1.02182 0.90993 1.17326 0.96892 0.89544 0.85220 1.91520 1.83791 1.75950 1.60019 1.20910 1.05475 0.95053 1.00559 1.17067 0.96843 0.81231 0.92624 1.91526 1.84455 1.40121 1.94585 0.90512 0.88511 0.89076 0.75442 0.87028 0.86263 0.88254 0.96544 0.94434 0.92453 0.83240 0.83941 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.39 36.01 0.37 -1.28 16 2 C 0.51 6.56 7.31 -10.99 -0.08 6.48 16 3 O -0.54 -8.17 13.21 5.56 0.07 -8.10 16 4 N -0.71 -8.68 4.39 -54.93 -0.24 -8.93 16 5 C 0.21 2.58 2.08 -69.08 -0.14 2.44 16 6 H 0.11 1.36 7.91 -51.93 -0.41 0.95 16 7 C -0.14 -1.95 3.92 -27.88 -0.11 -2.06 16 8 C 0.46 8.83 7.79 36.01 0.28 9.11 16 9 O -0.52 -10.91 14.57 -18.76 -0.27 -11.18 16 10 O -0.36 -8.22 9.86 -39.25 -0.39 -8.60 16 11 C 0.22 5.67 2.56 -27.88 -0.07 5.60 16 12 H 0.05 1.32 7.16 -51.93 -0.37 0.94 16 13 C -0.15 -3.83 9.33 37.16 0.35 -3.49 16 14 C -0.52 -14.45 8.90 -34.44 -0.31 -14.76 16 15 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 18 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.14 -1.54 4.33 -104.55 -0.45 -2.00 16 23 C -0.02 -0.19 7.36 -39.60 -0.29 -0.48 16 24 C -0.17 -1.62 10.03 -39.50 -0.40 -2.02 16 25 C 0.13 1.33 7.30 -39.43 -0.29 1.04 16 26 F -0.13 -1.40 17.27 2.25 0.04 -1.37 16 27 C -0.20 -2.01 10.01 -39.45 -0.39 -2.41 16 28 C 0.14 1.57 7.25 -39.42 -0.29 1.29 16 29 F -0.13 -1.45 16.77 2.25 0.04 -1.42 16 30 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.41 4.46 8.68 -40.82 -0.35 4.11 16 34 H 0.11 1.28 7.88 -51.93 -0.41 0.87 16 35 H 0.12 1.72 5.54 -51.93 -0.29 1.43 16 36 H 0.10 2.64 6.07 -51.93 -0.32 2.33 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.15 1.53 6.03 -52.48 -0.32 1.21 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.62 364.08 -6.53 -38.15 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.96 Total: 5.31 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.91 Total: -0.93 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.39 Total: -33.18 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.59 Total: -27.89 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.62 -6.53 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.626 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds