Wall clock time and date at job start Tue Mar 31 2020 23:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00237 * 2 1 4 4 N 1.34779 * 119.99938 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99794 * 185.34103 * 4 2 1 6 6 H 1.09002 * 109.46632 * 174.14883 * 5 4 2 7 7 C 1.52994 * 109.47067 * 294.15023 * 5 4 2 8 8 C 1.50696 * 109.47270 * 294.99904 * 7 5 4 9 9 O 1.20822 * 120.00235 * 0.02562 * 8 7 5 10 10 O 1.34232 * 120.00145 * 179.97438 * 8 7 5 11 11 C 1.45198 * 117.00123 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47119 * 30.00697 * 11 10 8 13 13 C 1.52999 * 109.47521 * 270.00089 * 11 10 8 14 14 C 1.50701 * 109.47024 * 150.00315 * 11 10 8 15 15 H 1.08003 * 119.99866 * 4.84654 * 14 11 10 16 16 C 1.37881 * 119.99920 * 184.84343 * 14 11 10 17 17 N 1.31512 * 119.99731 * 201.13813 * 16 14 11 18 18 Si 1.86794 * 119.99915 * 21.41776 * 16 14 11 19 19 H 1.48508 * 109.47078 * 179.72180 * 18 16 14 20 20 H 1.48503 * 109.47011 * 299.72117 * 18 16 14 21 21 H 1.48496 * 109.47286 * 59.72303 * 18 16 14 22 22 C 1.50700 * 109.47035 * 54.15076 * 5 4 2 23 23 C 1.38227 * 119.98978 * 254.38907 * 22 5 4 24 24 C 1.38181 * 120.04990 * 179.76807 * 23 22 5 25 25 C 1.38492 * 120.02538 * 0.50721 * 24 23 22 26 26 F 1.35107 * 120.01112 * 179.76793 * 25 24 23 27 27 C 1.38394 * 119.97750 * 359.75061 * 25 24 23 28 28 C 1.38447 * 119.94662 * 359.97438 * 27 25 24 29 29 F 1.35096 * 120.01008 * 180.02562 * 28 27 25 30 30 H 1.08998 * 109.47049 * 269.99641 * 1 2 3 31 31 H 1.09000 * 109.47172 * 29.99853 * 1 2 3 32 32 H 1.09003 * 109.46768 * 149.99930 * 1 2 3 33 33 H 0.96997 * 120.00435 * 5.34489 * 4 2 1 34 34 H 1.09000 * 109.46905 * 175.00172 * 7 5 4 35 35 H 1.08999 * 109.47207 * 55.00399 * 7 5 4 36 36 H 1.09008 * 109.46964 * 55.16590 * 13 11 10 37 37 H 1.09000 * 109.47628 * 175.16240 * 13 11 10 38 38 H 1.09002 * 109.47414 * 295.16753 * 13 11 10 39 39 H 0.97003 * 120.00405 * 355.24372 * 17 16 14 40 40 H 1.07999 * 119.97179 * 0.02562 * 23 22 5 41 41 H 1.08000 * 119.98437 * 180.25751 * 24 23 22 42 42 H 1.07997 * 120.02986 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6412 -1.1699 0.1186 6 1 3.9968 -2.1966 0.2051 7 6 4.2545 -0.5206 -1.1236 8 6 3.9509 -1.3656 -2.3338 9 8 3.3094 -2.3826 -2.2151 10 8 4.3923 -0.9880 -3.5439 11 6 4.0629 -1.8506 -4.6645 12 1 3.1151 -2.3526 -4.4703 13 6 5.1658 -2.8956 -4.8452 14 6 3.9453 -1.0227 -5.9182 15 1 4.1785 0.0316 -5.8929 16 6 3.5399 -1.6111 -7.0974 17 7 3.8223 -1.0403 -8.2481 18 14 2.5827 -3.2147 -7.0602 19 1 2.2621 -3.6322 -8.4489 20 1 3.4023 -4.2652 -6.4043 21 1 1.3230 -3.0218 -6.2980 22 6 4.0474 -0.3927 1.3442 23 6 4.5962 0.8690 1.2117 24 6 4.9648 1.5848 2.3348 25 6 4.7943 1.0343 3.5941 26 9 5.1591 1.7324 4.6918 27 6 4.2499 -0.2310 3.7278 28 6 3.8757 -0.9449 2.6021 29 9 3.3437 -2.1799 2.7312 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6991 -2.0055 -0.0773 34 1 5.3342 -0.4421 -0.9969 35 1 3.8313 0.4746 -1.2598 36 1 5.3098 -3.4373 -3.9102 37 1 4.8784 -3.5953 -5.6299 38 1 6.0951 -2.3986 -5.1239 39 1 4.2546 -0.1721 -8.2657 40 1 4.7333 1.2974 0.2298 41 1 5.3896 2.5722 2.2302 42 1 4.1162 -0.6609 4.7095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744136089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:39 Heat of formation + Delta-G solvation = -190.883283 kcal Electronic energy + Delta-G solvation = -30157.209211 eV Core-core repulsion = 25545.497265 eV Total energy + Delta-G solvation = -4611.711946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.29778 -49.27487 -40.71019 -39.43883 -38.72087 -36.25727 -35.11520 -33.28692 -32.50719 -31.03766 -30.60280 -29.71566 -29.07907 -25.19699 -24.85594 -23.48696 -22.29614 -21.46576 -20.19068 -19.49892 -18.58505 -17.86127 -17.65362 -17.23610 -17.10329 -16.50708 -16.24798 -16.04309 -15.62621 -15.52708 -15.32388 -15.22946 -14.90683 -14.63206 -14.06193 -13.90504 -13.75570 -13.36993 -12.91614 -12.83884 -12.81972 -12.63357 -12.43892 -12.31456 -12.14952 -12.00742 -11.78953 -11.60929 -11.52582 -11.41106 -10.62919 -10.15823 -10.07338 -9.96719 -9.80407 -9.72842 -9.33035 -9.25141 -9.03488 -8.89959 -8.32138 -6.69221 -4.26841 0.59579 0.75028 2.56619 2.78003 2.91332 3.26782 3.31655 3.35324 3.38853 3.51357 3.56167 4.09867 4.23548 4.31991 4.33388 4.53707 4.69568 4.80991 4.88399 5.03706 5.06672 5.17025 5.27235 5.33549 5.45067 5.54258 5.58186 5.62831 5.69187 5.74371 5.82929 5.98327 6.18528 6.30390 6.38474 6.45474 6.45790 6.67604 7.13074 7.34057 7.44526 7.79974 8.14222 8.21329 8.43245 8.81306 9.40138 10.73859 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.002869 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.467649 B = 9757.464572 C =10016.227132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.512 3.488 3 O -0.541 6.541 4 N -0.714 5.714 5 C 0.209 3.791 6 H 0.111 0.889 7 C -0.140 4.140 8 C 0.457 3.543 9 O -0.526 6.526 10 O -0.344 6.344 11 C 0.198 3.802 12 H 0.036 0.964 13 C -0.167 4.167 14 C -0.613 4.613 15 H 0.068 0.932 16 C 0.041 3.959 17 N -0.889 5.889 18 Si 1.039 2.961 19 H -0.279 1.279 20 H -0.272 1.272 21 H -0.279 1.279 22 C -0.139 4.139 23 C -0.019 4.019 24 C -0.165 4.165 25 C 0.132 3.868 26 F -0.133 7.133 27 C -0.200 4.200 28 C 0.143 3.857 29 F -0.128 7.128 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.272 0.728 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 0.808 23.884 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.418 6.418 4 N -0.366 5.366 5 C 0.104 3.896 6 H 0.129 0.871 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.416 6.416 10 O -0.259 6.259 11 C 0.145 3.855 12 H 0.054 0.946 13 C -0.224 4.224 14 C -0.651 4.651 15 H 0.086 0.914 16 C -0.166 4.166 17 N -0.522 5.522 18 Si 0.866 3.134 19 H -0.204 1.204 20 H -0.199 1.199 21 H -0.205 1.205 22 C -0.142 4.142 23 C -0.038 4.038 24 C -0.184 4.184 25 C 0.112 3.888 26 F -0.112 7.112 27 C -0.220 4.220 28 C 0.124 3.876 29 F -0.106 7.106 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.246 0.754 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.759 0.074 22.910 22.978 hybrid contribution 0.354 0.621 1.177 1.377 sum -1.404 0.695 24.087 24.138 Atomic orbital electron populations 1.21880 0.91794 1.05194 1.04415 1.20845 0.90723 0.83462 0.75009 1.90663 1.70543 1.31356 1.49273 1.46005 1.06345 1.09573 1.74706 1.19335 0.81146 0.99632 0.89529 0.87133 1.21928 1.03881 1.01829 0.90234 1.23225 0.76451 0.84291 0.85970 1.90545 1.38255 1.26093 1.86755 1.86550 1.69983 1.53363 1.16027 1.20843 0.94085 0.88916 0.81700 0.94646 1.22539 1.00959 0.99026 0.99911 1.21884 1.52516 0.97971 0.92685 0.91378 1.25659 0.95208 1.04517 0.91208 1.70869 1.38267 1.17002 1.26045 0.84125 0.77221 0.75539 0.76530 1.20412 1.19881 1.20527 1.20043 1.03874 0.97058 0.93180 1.20964 0.91922 0.91351 0.99529 1.21239 1.04466 1.02137 0.90587 1.17342 0.98320 0.90035 0.83113 1.91530 1.89187 1.78276 1.52194 1.20923 1.06243 0.95245 0.99582 1.17067 0.96865 0.80891 0.92821 1.91528 1.83455 1.38983 1.96657 0.89092 0.88812 0.90032 0.75394 0.87035 0.85797 0.95147 0.91303 0.92492 0.91739 0.83131 0.83854 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.31 36.01 0.37 -1.18 16 2 C 0.51 6.32 7.33 -10.98 -0.08 6.24 16 3 O -0.54 -8.03 13.16 5.56 0.07 -7.96 16 4 N -0.71 -8.30 4.39 -54.93 -0.24 -8.54 16 5 C 0.21 2.47 2.08 -69.08 -0.14 2.33 16 6 H 0.11 1.27 7.90 -51.93 -0.41 0.86 16 7 C -0.14 -1.91 3.95 -27.89 -0.11 -2.02 16 8 C 0.46 8.55 7.79 36.00 0.28 8.83 16 9 O -0.53 -10.37 14.57 -18.75 -0.27 -10.64 16 10 O -0.34 -7.80 9.86 -39.26 -0.39 -8.19 16 11 C 0.20 4.95 2.15 -27.88 -0.06 4.89 16 12 H 0.04 0.91 5.79 -51.93 -0.30 0.61 16 13 C -0.17 -3.77 9.23 37.16 0.34 -3.43 16 14 C -0.61 -17.47 9.13 -34.44 -0.31 -17.79 16 15 H 0.07 2.09 8.06 -52.48 -0.42 1.67 16 16 C 0.04 1.17 5.30 -17.82 -0.09 1.07 16 17 N -0.89 -26.62 13.70 55.43 0.76 -25.86 16 18 Si 1.04 24.66 26.51 -169.99 -4.51 20.16 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -5.99 5.68 56.52 0.32 -5.67 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 C -0.14 -1.52 4.34 -104.55 -0.45 -1.97 16 23 C -0.02 -0.20 7.43 -39.61 -0.29 -0.49 16 24 C -0.17 -1.56 10.02 -39.51 -0.40 -1.95 16 25 C 0.13 1.29 7.30 -39.43 -0.29 1.00 16 26 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 27 C -0.20 -1.90 10.01 -39.45 -0.39 -2.29 16 28 C 0.14 1.50 7.24 -39.43 -0.29 1.21 16 29 F -0.13 -1.36 16.76 2.25 0.04 -1.32 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 4.20 8.83 -40.82 -0.36 3.84 16 34 H 0.11 1.24 7.89 -51.93 -0.41 0.83 16 35 H 0.12 1.78 5.40 -51.93 -0.28 1.50 16 36 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.07 1.56 5.08 -51.93 -0.26 1.29 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.27 8.10 8.73 -40.82 -0.36 7.75 16 40 H 0.15 1.51 6.01 -52.49 -0.32 1.19 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -32.84 360.26 -5.95 -38.79 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.96 Total: 5.00 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.92 Total: -5.55 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.52 Total: -34.40 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.59 Total: -26.79 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.51 Total: 20.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.84 -5.95 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.092 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds