Wall clock time and date at job start Tue Mar 31 2020 23:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99675 * 2 1 4 4 N 1.34771 * 119.99948 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99709 * 185.05631 * 4 2 1 6 6 H 1.08999 * 109.46976 * 182.98159 * 5 4 2 7 7 C 1.53004 * 109.47343 * 62.98639 * 5 4 2 8 8 C 1.50700 * 109.47061 * 64.99948 * 7 5 4 9 9 O 1.20824 * 120.00097 * 359.97438 * 8 7 5 10 10 O 1.34228 * 120.00059 * 180.02562 * 8 7 5 11 11 C 1.45196 * 117.00150 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47445 * 29.99500 * 11 10 8 13 13 C 1.52999 * 109.47342 * 269.99749 * 11 10 8 14 14 C 1.50699 * 109.47476 * 149.99860 * 11 10 8 15 15 H 1.08005 * 119.99906 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00544 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99592 * 0.02562 * 16 14 11 18 18 Si 1.86791 * 120.00146 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46925 * 90.00026 * 18 16 14 20 20 H 1.48497 * 109.47389 * 209.99821 * 18 16 14 21 21 H 1.48498 * 109.47300 * 330.00282 * 18 16 14 22 22 C 1.50697 * 109.47116 * 302.98503 * 5 4 2 23 23 C 1.38233 * 119.98749 * 105.88041 * 22 5 4 24 24 C 1.38183 * 120.04855 * 180.02562 * 23 22 5 25 25 C 1.38496 * 120.03033 * 0.02562 * 24 23 22 26 26 F 1.35094 * 120.01442 * 180.02562 * 25 24 23 27 27 C 1.38402 * 119.96716 * 359.97438 * 25 24 23 28 28 C 1.38434 * 119.95660 * 0.02562 * 27 25 24 29 29 F 1.35096 * 120.01709 * 179.97438 * 28 27 25 30 30 H 1.09002 * 109.46926 * 269.99736 * 1 2 3 31 31 H 1.09001 * 109.47269 * 29.99921 * 1 2 3 32 32 H 1.09000 * 109.47045 * 150.00159 * 1 2 3 33 33 H 0.96996 * 120.00558 * 5.05019 * 4 2 1 34 34 H 1.08996 * 109.47345 * 184.99777 * 7 5 4 35 35 H 1.09000 * 109.46620 * 305.00241 * 7 5 4 36 36 H 1.09005 * 109.47105 * 299.99966 * 13 11 10 37 37 H 1.08999 * 109.47006 * 59.99728 * 13 11 10 38 38 H 1.09002 * 109.47596 * 179.97438 * 13 11 10 39 39 H 0.96998 * 119.99700 * 180.02562 * 17 16 14 40 40 H 1.08000 * 119.97178 * 0.02562 * 23 22 5 41 41 H 1.08002 * 119.98188 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.01823 * 179.72110 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6416 -1.1696 0.1113 6 1 4.0097 -2.1931 0.0401 7 6 4.0510 -0.5731 1.4595 8 6 3.5645 -1.4656 2.5721 9 8 2.9527 -2.4748 2.3134 10 8 3.8099 -1.1387 3.8507 11 6 3.3111 -2.0444 4.8700 12 1 3.2890 -3.0599 4.4745 13 6 1.8972 -1.6250 5.2774 14 6 4.2164 -1.9937 6.0737 15 1 5.0806 -1.3459 6.0725 16 6 3.9416 -2.7743 7.1765 17 7 2.8896 -3.5635 7.1778 18 14 5.0642 -2.7119 8.6681 19 1 4.5876 -1.6609 9.6027 20 1 5.0490 -4.0286 9.3546 21 1 6.4486 -2.3965 8.2330 22 6 4.2321 -0.3447 -1.0030 23 6 4.7544 0.9067 -0.7343 24 6 5.2957 1.6644 -1.7552 25 6 5.3150 1.1711 -3.0492 26 9 5.8447 1.9119 -4.0470 27 6 4.7923 -0.0816 -3.3194 28 6 4.2503 -0.8399 -2.2959 29 9 3.7393 -2.0627 -2.5583 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6988 -2.0055 -0.0748 34 1 5.1369 -0.4929 1.5066 35 1 3.6084 0.4170 1.5680 36 1 1.9193 -0.6094 5.6729 37 1 1.2424 -1.6616 4.4068 38 1 1.5226 -2.3051 6.0423 39 1 2.6961 -4.1124 7.9537 40 1 4.7393 1.2923 0.2744 41 1 5.7031 2.6421 -1.5441 42 1 4.8029 -0.4653 -4.3290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744136091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:45 Heat of formation + Delta-G solvation = -192.008938 kcal Electronic energy + Delta-G solvation = -30080.436550 eV Core-core repulsion = 25468.675792 eV Total energy + Delta-G solvation = -4611.760758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.23661 -49.20171 -40.62697 -39.27156 -38.66153 -36.10616 -35.01767 -33.31085 -32.44214 -30.96887 -30.06742 -29.52948 -28.88113 -25.38309 -24.98051 -23.42402 -22.24835 -21.52685 -20.22109 -19.39626 -18.49691 -17.70776 -17.27656 -17.01751 -16.67942 -16.36791 -16.16920 -15.95275 -15.54969 -15.46655 -15.22285 -15.10906 -14.79044 -14.55121 -14.40961 -13.90251 -13.75321 -13.27790 -12.89381 -12.77410 -12.62855 -12.34624 -12.27330 -12.09266 -11.95830 -11.86286 -11.63202 -11.35866 -11.22502 -11.08818 -10.86413 -10.42900 -10.31503 -9.96954 -9.69979 -9.57376 -9.25184 -9.19866 -8.95396 -8.80149 -8.53147 -6.22484 -4.29362 0.67672 0.82624 2.60415 2.93016 2.98763 3.22244 3.27428 3.30647 3.40866 3.51127 3.63730 4.17524 4.25937 4.31735 4.45324 4.60162 4.74037 4.87152 4.96973 5.08960 5.10791 5.19197 5.35816 5.42793 5.53864 5.61612 5.69458 5.73156 5.74369 5.77097 5.90490 6.05333 6.35444 6.52761 6.58457 6.83100 6.86299 7.12027 7.49046 7.55789 7.67901 7.88823 8.09799 8.18375 8.58169 8.84003 9.36395 10.84934 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002762 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.236425 B =10133.401073 C =10778.542304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.512 3.488 3 O -0.543 6.543 4 N -0.713 5.713 5 C 0.208 3.792 6 H 0.112 0.888 7 C -0.139 4.139 8 C 0.457 3.543 9 O -0.522 6.522 10 O -0.356 6.356 11 C 0.216 3.784 12 H 0.047 0.953 13 C -0.153 4.153 14 C -0.522 4.522 15 H 0.069 0.931 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.135 4.135 23 C -0.018 4.018 24 C -0.166 4.166 25 C 0.130 3.870 26 F -0.134 7.134 27 C -0.200 4.200 28 C 0.143 3.857 29 F -0.128 7.128 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.410 0.590 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.036 0.964 37 H 0.014 0.986 38 H 0.099 0.901 39 H 0.266 0.734 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 7.050 -19.501 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.420 6.420 4 N -0.364 5.364 5 C 0.103 3.897 6 H 0.130 0.870 7 C -0.178 4.178 8 C 0.300 3.700 9 O -0.413 6.413 10 O -0.272 6.272 11 C 0.164 3.836 12 H 0.064 0.936 13 C -0.211 4.211 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.137 4.137 23 C -0.036 4.036 24 C -0.185 4.185 25 C 0.110 3.890 26 F -0.113 7.113 27 C -0.220 4.220 28 C 0.123 3.877 29 F -0.107 7.107 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.175 7.319 -19.419 20.753 hybrid contribution 0.116 -0.645 0.537 0.847 sum 0.290 6.675 -18.881 20.028 Atomic orbital electron populations 1.21884 0.91865 1.04509 1.05024 1.20833 0.90688 0.83495 0.75031 1.90671 1.70547 1.31310 1.49508 1.45993 1.06295 1.09480 1.74646 1.19355 0.80770 0.99527 0.90097 0.87039 1.21891 1.04082 1.01128 0.90662 1.23086 0.77096 0.84659 0.85189 1.90562 1.38984 1.26792 1.84928 1.86487 1.71776 1.53916 1.15023 1.20622 0.92033 0.88211 0.82710 0.93566 1.22152 0.96944 1.01506 1.00516 1.21038 1.10916 1.25615 0.98439 0.91311 1.24887 0.95732 0.94673 0.98675 1.69893 1.26427 1.25820 1.30584 0.86269 0.80688 0.77496 0.81669 1.20336 1.20962 1.19588 1.20059 1.03217 0.97252 0.93197 1.20920 0.91492 0.91047 1.00182 1.21218 1.04056 1.02189 0.90993 1.17328 0.96884 0.89544 0.85218 1.91520 1.83795 1.75944 1.60017 1.20909 1.05451 0.95060 1.00572 1.17061 0.96824 0.81233 0.92623 1.91525 1.84447 1.40122 1.94588 0.88611 0.89095 0.90325 0.75450 0.86938 0.86343 0.94490 0.96675 0.88256 0.92389 0.83253 0.83946 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.31 36.01 0.37 -1.22 16 2 C 0.51 6.37 7.31 -10.99 -0.08 6.29 16 3 O -0.54 -7.99 13.21 5.56 0.07 -7.92 16 4 N -0.71 -8.52 4.39 -54.93 -0.24 -8.77 16 5 C 0.21 2.58 2.08 -69.08 -0.14 2.43 16 6 H 0.11 1.38 7.91 -51.93 -0.41 0.97 16 7 C -0.14 -1.94 3.92 -27.88 -0.11 -2.05 16 8 C 0.46 8.82 7.79 36.01 0.28 9.10 16 9 O -0.52 -10.89 14.57 -18.75 -0.27 -11.17 16 10 O -0.36 -8.21 9.86 -39.25 -0.39 -8.60 16 11 C 0.22 5.67 2.56 -27.88 -0.07 5.60 16 12 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 13 C -0.15 -3.81 9.32 37.16 0.35 -3.46 16 14 C -0.52 -14.45 8.90 -34.44 -0.31 -14.76 16 15 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.88 11.32 55.43 0.63 -24.26 16 18 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.14 -1.55 4.33 -104.54 -0.45 -2.00 16 23 C -0.02 -0.19 7.37 -39.60 -0.29 -0.48 16 24 C -0.17 -1.62 10.02 -39.51 -0.40 -2.02 16 25 C 0.13 1.33 7.30 -39.43 -0.29 1.05 16 26 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 27 C -0.20 -2.02 10.01 -39.45 -0.39 -2.41 16 28 C 0.14 1.58 7.24 -39.43 -0.29 1.30 16 29 F -0.13 -1.46 16.77 2.25 0.04 -1.42 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 4.37 8.83 -40.82 -0.36 4.01 16 34 H 0.11 1.32 7.88 -51.93 -0.41 0.91 16 35 H 0.12 1.68 5.54 -51.93 -0.29 1.39 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.15 1.52 6.03 -52.49 -0.32 1.20 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -31.55 364.37 -6.55 -38.09 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.98 Total: 5.16 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.92 Total: -1.04 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.39 Total: -33.02 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.59 Total: -27.69 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.55 -6.55 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.918 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds