Wall clock time and date at job start Tue Mar 31 2020 23:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47446 * 2 1 4 4 O 1.45195 * 109.47057 * 120.00366 * 2 1 3 5 5 C 1.34226 * 116.99927 * 269.99438 * 4 2 1 6 6 O 1.20823 * 120.00320 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00122 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47192 * 180.02562 * 7 5 4 9 9 C 1.38213 * 119.99519 * 264.72356 * 8 7 5 10 10 C 1.38429 * 119.99484 * 179.77302 * 9 8 7 11 11 F 1.35105 * 119.99883 * 180.27086 * 10 9 8 12 12 C 1.38469 * 120.00099 * 0.52343 * 10 9 8 13 13 C 1.38166 * 120.00052 * 359.72529 * 12 10 9 14 14 C 1.38421 * 120.00347 * 84.99960 * 8 7 5 15 15 F 1.35102 * 119.99977 * 359.96995 * 14 8 7 16 16 C 1.50702 * 109.46573 * 240.00234 * 2 1 3 17 17 O 1.21287 * 120.00026 * 248.56697 * 16 2 1 18 18 N 1.34777 * 120.00006 * 68.56890 * 16 2 1 19 19 C 1.46494 * 120.00251 * 4.58150 * 18 16 2 20 20 C 1.46502 * 119.99457 * 184.58146 * 18 16 2 21 21 C 1.50703 * 109.47152 * 90.00340 * 20 18 16 22 22 H 1.07993 * 119.99827 * 359.97438 * 21 20 18 23 23 C 1.37880 * 119.99900 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99780 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99712 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46959 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46990 * 120.00228 * 25 23 21 28 28 H 1.48501 * 109.46955 * 239.99819 * 25 23 21 29 29 H 1.08995 * 109.47043 * 187.15367 * 1 2 3 30 30 H 1.09001 * 109.46492 * 307.15208 * 1 2 3 31 31 H 1.08994 * 109.47320 * 67.14708 * 1 2 3 32 32 H 1.08998 * 109.46798 * 300.00098 * 7 5 4 33 33 H 1.08998 * 109.46748 * 59.99715 * 7 5 4 34 34 H 1.07994 * 120.00051 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.99922 * 179.70819 * 12 10 9 36 36 H 1.08002 * 119.99829 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47023 * 86.11538 * 19 18 16 38 38 H 1.08998 * 109.47309 * 206.11783 * 19 18 16 39 39 H 1.08999 * 109.46890 * 326.12304 * 19 18 16 40 40 H 1.09007 * 109.46486 * 210.00025 * 20 18 16 41 41 H 1.08991 * 109.47700 * 329.99871 * 20 18 16 42 42 H 0.97001 * 119.99582 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9976 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 6 2.8613 0.4728 4.6208 9 6 4.0852 1.0769 4.8386 10 6 4.2143 2.0447 5.8198 11 9 5.4094 2.6392 6.0291 12 6 3.1200 2.3998 6.5904 13 6 1.8978 1.7922 6.3761 14 6 1.7673 0.8281 5.3908 15 9 0.5721 0.2340 5.1812 16 6 2.0322 -0.7104 -1.2305 17 8 2.5962 -1.7791 -1.1261 18 7 1.8547 -0.1581 -2.4471 19 6 1.2644 1.1773 -2.5663 20 6 2.2522 -0.8935 -3.6503 21 6 1.0931 -1.7247 -4.1368 22 1 0.1545 -1.7074 -3.6029 23 6 1.2310 -2.5074 -5.2635 24 7 2.3739 -2.5281 -5.9139 25 14 -0.2055 -3.5383 -5.8661 26 1 -1.3692 -3.3404 -4.9651 27 1 -0.5695 -3.1224 -7.2444 28 1 0.1806 -4.9723 -5.8675 29 1 -0.3633 -1.0196 0.1280 30 1 -0.3632 0.6207 0.8191 31 1 -0.3633 0.3991 -0.9469 32 1 2.0106 -1.3374 3.8773 33 1 3.6885 -1.0402 3.3630 34 1 4.9396 0.7968 4.2405 35 1 3.2220 3.1515 7.3591 36 1 1.0444 2.0689 6.9774 37 1 2.0471 1.9302 -2.4732 38 1 0.7799 1.2750 -3.5378 39 1 0.5270 1.3203 -1.7764 40 1 2.5444 -0.1873 -4.4276 41 1 3.0938 -1.5452 -3.4164 42 1 2.4710 -3.0790 -6.7063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745545514.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:32 Heat of formation + Delta-G solvation = -176.218900 kcal Electronic energy + Delta-G solvation = -29156.062778 eV Core-core repulsion = 24544.986728 eV Total energy + Delta-G solvation = -4611.076050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.32218 -49.30712 -40.85898 -39.44757 -38.79743 -36.48024 -34.93899 -33.62744 -32.86947 -31.62399 -30.63426 -28.53267 -27.72952 -26.17499 -24.53597 -23.63030 -23.12741 -22.22947 -20.76769 -18.90720 -18.14892 -17.98708 -17.69855 -17.60737 -16.70113 -16.55242 -16.26103 -16.12344 -15.81446 -15.63066 -15.08670 -14.85256 -14.74443 -14.66775 -14.32479 -14.00249 -13.92992 -13.41923 -13.15236 -13.11511 -12.85282 -12.52562 -12.36706 -12.26510 -12.12522 -12.09622 -11.65268 -11.52695 -11.36870 -11.23362 -10.90141 -10.76196 -10.66960 -10.58726 -10.19662 -9.66320 -9.64576 -8.97990 -8.92910 -8.47950 -7.74634 -6.08651 -4.13874 0.44257 0.54794 2.06400 2.37022 2.96589 3.21007 3.27461 3.35444 3.39450 3.65977 3.72540 3.87486 3.94974 4.14036 4.40528 4.46674 4.61553 4.64829 4.82116 4.85119 5.00125 5.03314 5.08804 5.23548 5.26171 5.43580 5.45409 5.52398 5.57489 5.62996 5.66187 5.73343 5.84617 6.05255 6.25863 6.29589 6.38227 6.96092 7.37172 7.44032 7.62781 7.87465 8.17024 8.26481 8.81193 8.96275 9.51369 10.99530 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.002199 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.179614 B =12729.548812 C =13136.651925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.104 0.896 4 O -0.322 6.322 5 C 0.464 3.536 6 O -0.504 6.504 7 C -0.076 4.076 8 C -0.080 4.080 9 C -0.109 4.109 10 C 0.091 3.909 11 F -0.134 7.134 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.108 3.892 15 F -0.130 7.130 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.595 5.595 19 C 0.067 3.933 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 10.693 24.871 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.238 6.238 5 C 0.306 3.694 6 O -0.392 6.392 7 C -0.113 4.113 8 C -0.081 4.081 9 C -0.128 4.128 10 C 0.072 3.928 11 F -0.112 7.112 12 C -0.140 4.140 13 C -0.142 4.142 14 C 0.089 3.911 15 F -0.108 7.108 16 C 0.294 3.706 17 O -0.397 6.397 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.127 3.873 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.058 10.387 24.684 26.780 hybrid contribution -0.852 -0.345 -0.542 1.067 sum -0.794 10.042 24.142 26.159 Atomic orbital electron populations 1.22301 0.92164 1.04245 1.04078 1.22661 0.96009 0.97381 0.82650 0.87870 1.86616 1.76339 1.41299 1.19498 1.23378 0.74613 0.85940 0.85465 1.90668 1.47857 1.16441 1.84232 1.20216 1.06134 0.97152 0.87847 1.19132 0.92544 0.99184 0.97227 1.20925 0.98137 0.95901 0.97842 1.17571 0.81614 0.95585 0.98066 1.91536 1.43314 1.82234 1.94154 1.21024 0.91214 1.01299 1.00494 1.20969 0.98771 0.96256 0.98238 1.17483 0.80889 0.95338 0.97413 1.91534 1.43080 1.82053 1.94156 1.19760 0.80903 0.86143 0.83825 1.90699 1.41720 1.21471 1.85777 1.48063 1.60740 1.17257 1.06846 1.21980 0.97888 0.84175 1.03631 1.19377 0.96826 0.91663 0.79475 1.21456 0.98427 1.26293 1.10557 0.92295 1.24945 0.96111 0.96615 0.96442 1.69942 1.24084 1.40225 1.18972 0.86425 0.82296 0.80189 0.78413 1.19770 1.20931 1.20824 0.90581 0.91254 0.88924 0.85742 0.85437 0.83384 0.83551 0.83412 0.93417 0.90092 0.91671 0.94612 0.93575 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.14 37.16 0.34 -2.08 16 2 C 0.07 1.19 2.16 -27.88 -0.06 1.13 16 3 H 0.10 1.58 6.73 -51.93 -0.35 1.23 16 4 O -0.32 -5.25 9.43 -45.85 -0.43 -5.69 16 5 C 0.46 6.31 7.92 36.01 0.29 6.59 16 6 O -0.50 -7.71 15.25 -18.75 -0.29 -8.00 16 7 C -0.08 -0.72 5.72 -29.03 -0.17 -0.88 16 8 C -0.08 -0.74 4.38 -104.56 -0.46 -1.20 16 9 C -0.11 -0.94 9.66 -39.52 -0.38 -1.32 16 10 C 0.09 0.77 7.30 -39.43 -0.29 0.48 16 11 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 12 C -0.12 -0.83 10.02 -39.52 -0.40 -1.23 16 13 C -0.12 -0.89 10.02 -39.52 -0.40 -1.29 16 14 C 0.11 1.01 7.24 -39.43 -0.29 0.73 16 15 F -0.13 -1.35 16.56 2.25 0.04 -1.31 16 16 C 0.51 10.87 7.03 -10.98 -0.08 10.79 16 17 O -0.52 -13.40 16.08 -13.95 -0.22 -13.62 16 18 N -0.60 -12.60 2.86 -182.95 -0.52 -13.12 16 19 C 0.07 1.05 9.80 59.84 0.59 1.63 16 20 C 0.25 6.36 5.18 -5.19 -0.03 6.33 16 21 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 22 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 25 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.24 5.46 -51.93 -0.28 0.96 16 32 H 0.12 0.99 7.79 -51.93 -0.40 0.58 16 33 H 0.13 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.06 0.85 4.31 -51.93 -0.22 0.63 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -35.06 372.55 -6.78 -41.84 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.98 Total: -1.77 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.74 Total: 6.22 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.21 Total: -38.69 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.94 Total: -27.31 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.06 -6.78 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745545514.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.376 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds