Wall clock time and date at job start Tue Mar 31 2020 23:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47092 * 2 1 4 4 C 1.46500 * 119.99656 * 269.99636 * 3 2 1 5 5 C 1.50694 * 109.47273 * 270.00082 * 4 3 2 6 6 H 1.08003 * 120.00247 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99534 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00231 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46860 * 59.99858 * 9 7 5 11 11 H 1.48491 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47117 * 300.00383 * 9 7 5 13 13 C 1.34768 * 120.00329 * 89.99693 * 3 2 1 14 14 O 1.21283 * 120.00373 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00290 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47396 * 179.97438 * 15 13 3 17 17 C 1.34234 * 116.99938 * 180.02562 * 16 15 13 18 18 O 1.20826 * 119.99712 * 359.72483 * 17 16 15 19 19 C 1.50700 * 120.00068 * 180.02562 * 17 16 15 20 20 C 1.50699 * 109.46893 * 179.97438 * 19 17 16 21 21 C 1.38203 * 120.00297 * 264.72225 * 20 19 17 22 22 C 1.38423 * 120.00016 * 179.77653 * 21 20 19 23 23 F 1.35103 * 120.00204 * 180.27394 * 22 21 20 24 24 C 1.38472 * 120.00048 * 0.52459 * 22 21 20 25 25 C 1.38161 * 120.00012 * 359.73128 * 24 22 21 26 26 C 1.38428 * 119.99817 * 85.00505 * 20 19 17 27 27 F 1.35102 * 120.00142 * 359.97200 * 26 20 19 28 28 H 1.09002 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47302 * 300.00265 * 1 2 3 30 30 H 1.09000 * 109.46706 * 60.00567 * 1 2 3 31 31 H 1.08994 * 109.47302 * 239.99734 * 2 1 3 32 32 H 1.09000 * 109.46706 * 119.99433 * 2 1 3 33 33 H 1.08999 * 109.47428 * 30.00002 * 4 3 2 34 34 H 1.09005 * 109.47258 * 149.99781 * 4 3 2 35 35 H 0.97002 * 119.99436 * 179.97438 * 8 7 5 36 36 H 1.09012 * 109.46606 * 59.99977 * 15 13 3 37 37 H 1.08996 * 109.47079 * 300.00556 * 15 13 3 38 38 H 1.08992 * 109.47012 * 300.00044 * 19 17 16 39 39 H 1.08999 * 109.46550 * 59.99877 * 19 17 16 40 40 H 1.08001 * 119.99943 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.00148 * 179.70933 * 24 22 21 42 42 H 1.07999 * 120.00426 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9139 2.0973 -3.4163 10 1 6.1418 0.6407 -3.5941 11 1 6.1617 2.7982 -4.7018 12 1 6.8411 2.6206 -2.3810 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3063 2.1959 3.5758 17 6 2.1354 1.7122 4.8163 18 8 1.7309 0.5848 4.9746 19 6 2.4415 2.5778 6.0114 20 6 2.1674 1.8041 7.2752 21 6 0.9490 1.9341 7.9145 22 6 0.6956 1.2199 9.0729 23 9 -0.4975 1.3427 9.6948 24 6 1.6668 0.3836 9.5971 25 6 2.8867 0.2577 8.9610 26 6 3.1381 0.9678 7.7991 27 9 4.3311 0.8447 7.1770 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1386 35 1 3.6758 3.5173 -4.4432 36 1 2.6211 0.4187 2.5303 37 1 0.9432 1.0127 2.5298 38 1 3.4901 2.8739 5.9864 39 1 1.8120 3.4673 5.9864 40 1 0.1932 2.5898 7.5081 41 1 1.4708 -0.1701 10.5035 42 1 3.6444 -0.3943 9.3700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745546156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:55 Heat of formation + Delta-G solvation = -183.575778 kcal Electronic energy + Delta-G solvation = -28809.938432 eV Core-core repulsion = 24198.543364 eV Total energy + Delta-G solvation = -4611.395068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.32410 -49.30913 -40.76498 -39.38729 -38.83608 -36.47455 -35.33037 -33.60440 -32.85686 -30.69496 -30.21107 -29.54857 -28.22805 -26.45281 -23.66042 -23.15661 -23.02711 -22.42676 -20.93473 -18.74282 -18.10033 -17.97360 -17.72688 -17.61055 -16.79545 -16.57189 -16.41229 -16.24351 -15.85914 -15.64336 -15.23839 -14.86004 -14.77161 -14.64452 -14.26304 -13.95755 -13.71142 -13.50557 -13.35945 -13.12555 -12.93691 -12.60682 -12.36988 -12.25210 -12.07338 -12.07067 -11.65690 -11.53874 -11.25185 -10.97769 -10.90319 -10.73742 -10.62713 -10.54362 -10.16470 -9.69789 -9.66020 -9.03582 -8.96482 -8.45904 -7.78178 -6.07271 -4.12262 0.43508 0.54061 2.04245 2.34182 2.95425 3.21844 3.31038 3.35448 3.39315 3.64553 3.72710 3.85315 3.94116 4.13691 4.42187 4.45663 4.62442 4.68417 4.83555 4.83836 5.03158 5.10413 5.17845 5.24620 5.27399 5.34304 5.44489 5.51278 5.56119 5.56827 5.62415 5.70684 5.97115 6.16898 6.25907 6.32540 6.42346 6.97115 7.37185 7.44287 7.59801 7.88552 8.18550 8.26875 8.81915 8.96767 9.52756 11.00866 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.002205 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.573559 B =12697.702903 C =13392.365695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.326 6.326 17 C 0.464 3.536 18 O -0.504 6.504 19 C -0.076 4.076 20 C -0.080 4.080 21 C -0.109 4.109 22 C 0.090 3.910 23 F -0.134 7.134 24 C -0.121 4.121 25 C -0.123 4.123 26 C 0.109 3.891 27 F -0.129 7.129 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -6.254 25.339 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.241 6.241 17 C 0.306 3.694 18 O -0.392 6.392 19 C -0.113 4.113 20 C -0.082 4.082 21 C -0.128 4.128 22 C 0.071 3.929 23 F -0.113 7.113 24 C -0.140 4.140 25 C -0.142 4.142 26 C 0.089 3.911 27 F -0.107 7.107 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.631 -5.862 25.134 26.415 hybrid contribution 0.881 -0.462 -0.460 1.096 sum -4.750 -6.325 24.674 25.910 Atomic orbital electron populations 1.22232 0.96512 1.01711 1.02407 1.21513 0.93767 0.83944 1.03049 1.48213 1.63771 1.13409 1.07142 1.19330 0.96481 0.93703 0.77531 1.21384 0.96832 1.32195 1.06392 0.92453 1.24933 0.97931 0.94844 0.96338 1.69921 1.35754 1.33242 1.14377 0.86541 0.84686 0.78266 0.77840 1.20229 1.21150 1.20134 1.19695 0.79754 0.87157 0.84278 1.90719 1.44519 1.17480 1.86731 1.22998 1.02742 0.92652 0.84340 1.86550 1.78437 1.44930 1.14179 1.23383 0.74603 0.86806 0.84615 1.90687 1.41977 1.19880 1.86699 1.20207 1.07022 0.97935 0.86122 1.19132 0.93647 0.98746 0.96639 1.20899 0.96863 1.00528 0.94517 1.17564 0.82277 0.99609 0.93467 1.91533 1.43249 1.94815 1.81677 1.21026 0.92404 0.99134 1.01431 1.20980 0.98202 1.00440 0.94597 1.17506 0.82028 0.98421 0.93105 1.91546 1.42895 1.94496 1.81788 0.91883 0.93155 0.91761 0.89381 0.91768 0.94613 0.93696 0.92600 0.88621 0.88676 0.85631 0.85453 0.83423 0.83548 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.59 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.35 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.63 7.75 -10.99 -0.09 10.54 16 14 O -0.52 -13.24 16.08 -14.11 -0.23 -13.47 16 15 C 0.05 0.80 4.50 36.01 0.16 0.96 16 16 O -0.33 -5.24 9.75 -45.92 -0.45 -5.69 16 17 C 0.46 6.20 7.95 36.01 0.29 6.48 16 18 O -0.50 -7.65 15.78 -18.75 -0.30 -7.95 16 19 C -0.08 -0.70 5.72 -29.03 -0.17 -0.86 16 20 C -0.08 -0.74 4.38 -104.56 -0.46 -1.20 16 21 C -0.11 -0.90 9.66 -39.53 -0.38 -1.28 16 22 C 0.09 0.74 7.30 -39.43 -0.29 0.45 16 23 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 24 C -0.12 -0.82 10.02 -39.52 -0.40 -1.22 16 25 C -0.12 -0.90 10.02 -39.52 -0.40 -1.30 16 26 C 0.11 1.04 7.24 -39.43 -0.29 0.75 16 27 F -0.13 -1.41 16.57 2.25 0.04 -1.37 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.10 1.41 7.40 -51.92 -0.38 1.02 16 37 H 0.10 1.32 7.18 -51.93 -0.37 0.95 16 38 H 0.13 1.03 7.79 -51.93 -0.40 0.63 16 39 H 0.13 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -35.05 376.98 -7.20 -42.25 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.17 Total: -2.58 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.10 Total: 5.87 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.31 Total: -38.33 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.97 Total: -27.10 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.05 -7.20 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745546156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.324 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds