Wall clock time and date at job start Tue Mar 31 2020 23:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 109.47492 * 2 1 4 4 C 1.46494 * 119.99781 * 270.00413 * 3 2 1 5 5 C 1.50701 * 109.46885 * 269.99319 * 4 3 2 6 6 H 1.08002 * 120.00163 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00067 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99956 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47188 * 119.99935 * 9 7 5 12 12 H 1.48492 * 109.47249 * 240.00067 * 9 7 5 13 13 C 1.34774 * 119.99713 * 89.99583 * 3 2 1 14 14 O 1.21286 * 119.99832 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00551 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47153 * 180.02562 * 15 13 3 17 17 C 1.34751 * 117.00167 * 180.02562 * 16 15 13 18 18 O 1.21507 * 119.99377 * 359.97438 * 17 16 15 19 19 C 1.47433 * 120.00280 * 179.97438 * 17 16 15 20 20 C 1.39790 * 120.14504 * 0.25592 * 19 17 16 21 21 C 1.37717 * 119.89422 * 180.30337 * 20 19 17 22 22 C 1.50706 * 119.90176 * 179.74299 * 21 20 19 23 23 C 1.38775 * 120.20295 * 359.71250 * 21 20 19 24 24 F 1.35092 * 119.85696 * 179.97438 * 23 21 20 25 25 C 1.38505 * 120.29265 * 0.02562 * 23 21 20 26 26 C 1.38180 * 120.09981 * 359.97438 * 25 23 21 27 27 F 1.35104 * 120.10149 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.47298 * 60.00239 * 1 2 3 29 29 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47688 * 300.00242 * 1 2 3 31 31 H 1.09002 * 109.47688 * 239.99757 * 2 1 3 32 32 H 1.09005 * 109.47298 * 119.99761 * 2 1 3 33 33 H 1.08992 * 109.47609 * 29.99229 * 4 3 2 34 34 H 1.09004 * 109.47350 * 149.99878 * 4 3 2 35 35 H 0.96995 * 120.00318 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46744 * 59.99702 * 15 13 3 37 37 H 1.09002 * 109.46678 * 300.00134 * 15 13 3 38 38 H 1.08001 * 120.05404 * 0.02562 * 20 19 17 39 39 H 1.09000 * 109.46808 * 269.97605 * 22 21 20 40 40 H 1.09002 * 109.46542 * 29.96916 * 22 21 20 41 41 H 1.08997 * 109.47154 * 149.97279 * 22 21 20 42 42 H 1.08004 * 119.95033 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3497 3.1272 -3.6171 9 14 5.9138 2.0975 -3.4163 10 1 6.6011 1.2413 -2.4163 11 1 5.9219 1.4189 -4.7372 12 1 6.6210 3.3987 -3.5240 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3060 2.1959 3.5759 17 6 2.1351 1.7101 4.8211 18 8 1.7344 0.5741 4.9803 19 6 2.4344 2.5569 5.9903 20 6 2.8905 3.8660 5.8107 21 6 3.1744 4.6504 6.9064 22 6 3.6717 6.0598 6.7129 23 6 3.0035 4.1472 8.1884 24 9 3.2846 4.9225 9.2583 25 6 2.5468 2.8531 8.3758 26 6 2.2582 2.0553 7.2851 27 9 1.8123 0.7931 7.4678 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 3.6760 3.5183 -4.4426 36 1 2.6226 0.4188 2.5299 37 1 0.9443 1.0115 2.5302 38 1 3.0243 4.2602 4.8141 39 1 4.7604 6.0570 6.6609 40 1 3.2647 6.4646 5.7862 41 1 3.3496 6.6771 7.5515 42 1 2.4154 2.4672 9.3759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748925455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:43 Heat of formation + Delta-G solvation = -183.447910 kcal Electronic energy + Delta-G solvation = -29068.230001 eV Core-core repulsion = 24456.840477 eV Total energy + Delta-G solvation = -4611.389524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.56410 -49.35266 -40.73517 -39.34009 -38.75245 -36.44159 -35.34909 -33.09361 -32.88080 -31.86414 -30.21227 -29.14032 -27.18504 -26.64869 -24.66101 -23.27586 -23.08107 -22.44029 -20.93206 -18.82942 -18.59881 -18.27974 -17.61025 -16.88672 -16.78762 -16.52398 -16.30840 -16.09173 -15.79906 -15.70670 -15.38934 -14.92468 -14.73990 -14.54914 -14.25477 -13.76915 -13.69399 -13.50788 -13.37187 -13.04882 -12.81402 -12.64627 -12.38185 -12.21464 -12.09627 -11.95004 -11.90732 -11.66453 -11.27506 -10.97413 -10.91186 -10.76238 -10.66237 -10.56938 -10.18011 -9.67865 -9.61590 -9.09680 -9.06013 -8.48296 -7.79881 -6.09152 -4.14049 -0.02690 0.50296 2.07300 2.22743 3.00101 3.19543 3.27399 3.29301 3.35349 3.39509 3.75410 3.79831 4.00738 4.16525 4.35609 4.42072 4.60991 4.81086 4.97784 5.04457 5.15931 5.17969 5.24651 5.25622 5.25826 5.32640 5.34371 5.53714 5.55534 5.68155 5.70141 5.70385 5.96732 6.14249 6.16441 6.20996 6.42001 6.95231 7.35338 7.42197 7.53066 7.86913 8.16695 8.24699 8.79653 8.94915 9.51220 10.99061 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.002572 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.380319 B =10883.704902 C =12203.318877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.051 3.949 16 O -0.322 6.322 17 C 0.509 3.491 18 O -0.495 6.495 19 C -0.166 4.166 20 C -0.001 4.001 21 C -0.141 4.141 22 C -0.115 4.115 23 C 0.163 3.837 24 F -0.122 7.122 25 C -0.204 4.204 26 C 0.190 3.810 27 F -0.106 7.106 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.167 0.833 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -0.677 22.303 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.237 6.237 17 C 0.352 3.648 18 O -0.383 6.383 19 C -0.168 4.168 20 C -0.019 4.019 21 C -0.142 4.142 22 C -0.172 4.172 23 C 0.143 3.857 24 F -0.100 7.100 25 C -0.223 4.223 26 C 0.169 3.831 27 F -0.084 7.084 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.184 0.816 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.758 -0.317 22.158 22.476 hybrid contribution 0.822 -0.600 -0.160 1.031 sum -2.935 -0.917 21.998 22.212 Atomic orbital electron populations 1.22233 0.96477 1.01753 1.02426 1.21524 0.93794 0.83901 1.03099 1.48209 1.63692 1.13430 1.07106 1.19345 0.96525 0.93715 0.77523 1.21461 0.96830 1.32033 1.06377 0.92327 1.24931 0.97927 0.94849 0.96345 1.69932 1.35649 1.33321 1.14373 0.86433 0.84521 0.78089 0.78326 1.19779 1.20953 1.20830 1.19660 0.79749 0.87140 0.84228 1.90709 1.44633 1.17465 1.86742 1.23032 1.02962 0.92607 0.84035 1.86571 1.78695 1.44687 1.13786 1.20683 0.75169 0.85470 0.83443 1.90907 1.41962 1.18751 1.86721 1.19194 1.11384 0.96236 0.90021 1.21358 0.90002 0.90178 1.00390 1.20018 1.04170 0.99240 0.90801 1.20784 1.02071 0.90395 1.03943 1.17400 0.96796 0.88207 0.83300 1.91544 1.90509 1.73941 1.54044 1.20921 1.07573 0.93705 1.00132 1.17191 0.94342 0.80086 0.91440 1.91642 1.85343 1.35602 1.95770 0.91762 0.91854 0.93124 0.89358 0.91710 0.94592 0.93663 0.92701 0.88413 0.88500 0.81594 0.90114 0.89911 0.90818 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.15 0.38 -1.82 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.25 6.25 5.16 -5.20 -0.03 6.23 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.36 7.75 -10.99 -0.09 10.27 16 14 O -0.52 -12.80 16.08 -14.11 -0.23 -13.03 16 15 C 0.05 0.80 4.51 36.01 0.16 0.96 16 16 O -0.32 -5.14 9.00 -47.31 -0.43 -5.57 16 17 C 0.51 7.38 7.89 34.48 0.27 7.66 16 18 O -0.49 -8.01 15.13 -19.27 -0.29 -8.30 16 19 C -0.17 -1.96 5.88 -104.93 -0.62 -2.58 16 20 C 0.00 -0.01 9.25 -39.19 -0.36 -0.37 16 21 C -0.14 -1.20 5.88 -104.61 -0.62 -1.82 16 22 C -0.12 -0.77 9.83 36.01 0.35 -0.42 16 23 C 0.16 1.37 7.25 -39.28 -0.28 1.08 16 24 F -0.12 -1.01 16.46 2.25 0.04 -0.97 16 25 C -0.20 -1.71 9.99 -39.50 -0.39 -2.10 16 26 C 0.19 2.05 7.28 -38.96 -0.28 1.76 16 27 F -0.11 -1.31 15.55 2.25 0.04 -1.28 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 31 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.10 1.39 7.40 -51.93 -0.38 1.01 16 37 H 0.10 1.33 7.18 -51.93 -0.37 0.95 16 38 H 0.17 1.66 7.61 -52.49 -0.40 1.26 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.07 0.44 7.63 -51.93 -0.40 0.04 16 42 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -33.39 374.22 -7.03 -40.43 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.14 Total: -2.70 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.95 Total: 7.08 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.31 Total: -37.77 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.94 Total: -26.89 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.07 Total: -2.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.39 -7.03 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748925455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.023 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds