Wall clock time and date at job start Tue Mar 31 2020 23:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47437 * 2 1 4 4 C 1.38073 * 120.00231 * 180.02562 * 3 2 1 5 5 S 1.76199 * 126.05497 * 0.13330 * 4 3 2 6 6 C 1.75979 * 90.27137 * 180.18059 * 5 4 3 7 7 N 1.28392 * 110.17752 * 359.82789 * 6 5 4 8 8 C 1.33699 * 117.34280 * 359.97438 * 7 6 5 9 9 C 1.46257 * 122.84018 * 179.97438 * 8 7 6 10 10 O 1.21672 * 119.99985 * 180.02562 * 9 8 7 11 11 O 1.34919 * 120.00367 * 359.75475 * 9 8 7 12 12 C 1.42895 * 117.00024 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47392 * 29.99745 * 12 11 9 14 14 C 1.52999 * 109.47074 * 269.99479 * 12 11 9 15 15 C 1.50703 * 109.47039 * 150.00014 * 12 11 9 16 16 O 1.21284 * 120.00188 * 16.02829 * 15 12 11 17 17 N 1.34781 * 120.00093 * 196.03150 * 15 12 11 18 18 C 1.46498 * 119.99980 * 5.35943 * 17 15 12 19 19 C 1.46497 * 119.99901 * 185.36117 * 17 15 12 20 20 C 1.50705 * 109.47037 * 89.99992 * 19 17 15 21 21 H 1.07997 * 120.00067 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00096 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00089 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47272 * 90.00154 * 24 22 20 26 26 H 1.48501 * 109.47120 * 209.99589 * 24 22 20 27 27 H 1.48500 * 109.47139 * 329.99697 * 24 22 20 28 28 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47178 * 300.00306 * 1 2 3 30 30 H 1.09004 * 109.47050 * 59.99998 * 1 2 3 31 31 H 1.09004 * 109.47023 * 240.00375 * 2 1 3 32 32 H 1.08998 * 109.47249 * 120.00384 * 2 1 3 33 33 H 0.97008 * 119.99396 * 359.97438 * 3 2 1 34 34 H 1.08006 * 124.91412 * 179.84310 * 6 5 4 35 35 H 1.08999 * 109.47014 * 186.13879 * 14 12 11 36 36 H 1.08997 * 109.47110 * 306.13815 * 14 12 11 37 37 H 1.08998 * 109.47082 * 66.14058 * 14 12 11 38 38 H 1.08996 * 109.47463 * 84.82283 * 18 17 15 39 39 H 1.08995 * 109.47094 * 204.82852 * 18 17 15 40 40 H 1.09000 * 109.46883 * 324.82627 * 18 17 15 41 41 H 1.08999 * 109.46870 * 209.99537 * 19 17 15 42 42 H 1.08997 * 109.47273 * 329.99532 * 19 17 15 43 43 H 0.96997 * 119.99895 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3758 1.6335 -0.0005 5 16 4.6557 0.4225 -0.0046 6 6 5.8712 1.6950 0.0030 7 7 5.3057 2.8476 0.0041 8 6 3.9690 2.8759 -0.0010 9 6 3.2020 4.1212 0.0001 10 8 1.9858 4.0865 -0.0043 11 8 3.8430 5.3083 0.0115 12 6 3.0308 6.4841 0.0113 13 1 2.0880 6.2745 0.5166 14 6 2.7526 6.9115 -1.4311 15 6 3.7521 7.5929 0.7334 16 8 4.9430 7.5045 0.9454 17 7 3.0738 8.6829 1.1438 18 6 1.6176 8.7389 0.9935 19 6 3.7926 9.8116 1.7399 20 6 4.1943 10.7797 0.6571 21 1 3.9399 10.5746 -0.3723 22 6 4.8874 11.9269 0.9804 23 7 5.1977 12.1765 2.2338 24 14 5.3858 13.1265 -0.3619 25 1 4.3079 14.1297 -0.5546 26 1 6.6400 13.8173 0.0322 27 1 5.6059 12.3865 -1.6305 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.3879 2.1185 -0.0004 34 1 6.9387 1.5302 0.0061 35 1 2.2267 7.8662 -1.4322 36 1 3.6956 7.0155 -1.9676 37 1 2.1371 6.1571 -1.9213 38 1 1.1453 8.2497 1.8454 39 1 1.2968 9.7796 0.9484 40 1 1.3272 8.2291 0.0749 41 1 3.1454 10.3166 2.4570 42 1 4.6841 9.4462 2.2496 43 1 5.6850 12.9838 2.4612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754520243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:53 Heat of formation + Delta-G solvation = -69.142823 kcal Electronic energy + Delta-G solvation = -27327.998533 eV Core-core repulsion = 23307.698788 eV Total energy + Delta-G solvation = -4020.299745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89156 -39.51705 -38.50122 -37.29687 -36.25471 -34.79841 -32.76650 -31.99846 -31.50859 -28.85387 -27.73035 -26.03020 -25.53953 -24.33883 -23.57209 -23.13395 -21.94340 -20.27193 -19.02734 -18.77479 -17.26405 -17.12818 -16.51450 -16.37603 -16.13772 -15.69233 -15.67640 -15.51227 -15.02761 -14.64640 -14.40733 -14.20493 -14.09079 -13.38813 -13.08984 -13.02738 -12.71876 -12.57267 -12.51303 -12.29941 -12.15195 -12.07145 -12.01336 -11.67477 -11.32056 -11.18855 -11.09632 -10.89153 -10.68111 -10.60860 -10.47867 -10.13734 -9.87412 -9.61370 -9.41368 -8.80597 -8.41641 -8.07220 -7.64927 -6.02368 -4.07436 0.46695 0.56642 1.28429 1.73407 2.66486 2.75921 3.12987 3.31706 3.33759 3.39178 3.44764 3.93746 4.20732 4.26840 4.42502 4.46303 4.66622 4.72266 4.90323 4.99916 5.08115 5.14427 5.21163 5.24937 5.32145 5.46556 5.57460 5.65473 5.76567 5.84632 5.91345 6.13767 6.19398 6.30365 6.44061 6.94318 7.04975 7.38071 7.46208 7.53638 7.87757 7.94536 8.24161 8.36693 8.90170 9.06334 9.57519 11.05751 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020275 B = 0.002430 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.659343 B =11518.910307 C =12297.874517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.672 5.672 4 C 0.181 3.819 5 S 0.066 5.934 6 C 0.021 3.979 7 N -0.373 5.373 8 C -0.115 4.115 9 C 0.557 3.443 10 O -0.534 6.534 11 O -0.297 6.297 12 C 0.067 3.933 13 H 0.100 0.900 14 C -0.165 4.165 15 C 0.510 3.490 16 O -0.515 6.515 17 N -0.598 5.598 18 C 0.075 3.925 19 C 0.245 3.755 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.427 0.573 34 H 0.210 0.790 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 -28.067 -5.522 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.306 5.306 4 C -0.055 4.055 5 S 0.308 5.692 6 C -0.285 4.285 7 N -0.083 5.083 8 C -0.247 4.247 9 C 0.403 3.597 10 O -0.426 6.426 11 O -0.210 6.210 12 C 0.008 3.992 13 H 0.117 0.883 14 C -0.222 4.222 15 C 0.294 3.706 16 O -0.390 6.390 17 N -0.332 5.332 18 C -0.069 4.069 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.272 0.728 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.034 -28.624 -5.272 30.475 hybrid contribution -0.539 1.789 -0.697 1.994 sum -9.573 -26.835 -5.969 29.110 Atomic orbital electron populations 1.21971 0.93140 1.03687 1.03498 1.21761 0.96292 0.81658 1.02453 1.44605 1.01570 1.09874 1.74525 1.23865 0.90292 0.95615 0.95681 1.85079 0.98006 1.10944 1.75171 1.28580 1.02750 0.86600 1.10563 1.66225 1.07506 1.25747 1.08805 1.18710 0.88544 0.89749 1.27707 1.19594 0.84976 0.83474 0.71646 1.90683 1.14300 1.87463 1.50172 1.86417 1.39129 1.12927 1.82502 1.22311 0.94739 0.83421 0.98719 0.88251 1.22187 1.03507 1.02673 0.93848 1.19770 0.87703 0.82846 0.80272 1.90711 1.14679 1.78678 1.54971 1.48063 1.06887 1.17621 1.60634 1.21809 0.81526 1.03463 1.00111 1.19356 0.92753 0.81549 0.93660 1.21435 1.36389 1.04881 0.93962 0.92367 1.24942 0.95542 0.97987 0.95645 1.69937 1.39921 1.26597 1.16832 0.86483 0.78026 0.80820 0.82023 1.20651 1.21060 1.19849 0.90102 0.91351 0.91391 0.90921 0.90894 0.72809 0.77343 0.89611 0.90641 0.91457 0.93572 0.90158 0.92287 0.94691 0.93568 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.03 37.15 0.37 -0.28 16 2 C 0.10 0.55 6.37 -4.04 -0.03 0.52 16 3 N -0.67 -6.08 5.63 -59.04 -0.33 -6.41 16 4 C 0.18 2.00 7.29 -14.95 -0.11 1.89 16 5 S 0.07 0.52 22.68 -107.50 -2.44 -1.91 16 6 C 0.02 0.21 12.43 51.32 0.64 0.85 16 7 N -0.37 -5.49 10.46 -10.82 -0.11 -5.61 16 8 C -0.11 -1.69 6.74 -84.04 -0.57 -2.26 16 9 C 0.56 9.36 7.86 33.95 0.27 9.63 16 10 O -0.53 -8.47 13.72 -19.40 -0.27 -8.73 16 11 O -0.30 -5.79 9.26 -47.71 -0.44 -6.24 16 12 C 0.07 1.24 2.09 -27.88 -0.06 1.18 16 13 H 0.10 1.64 6.26 -51.93 -0.33 1.32 16 14 C -0.16 -2.58 9.17 37.16 0.34 -2.24 16 15 C 0.51 11.72 6.95 -10.98 -0.08 11.65 16 16 O -0.52 -14.29 16.13 -13.83 -0.22 -14.52 16 17 N -0.60 -13.36 2.86 -182.96 -0.52 -13.88 16 18 C 0.07 1.24 9.79 59.85 0.59 1.83 16 19 C 0.25 6.61 5.18 -5.19 -0.03 6.59 16 20 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 21 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 24 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.43 4.34 6.05 -40.82 -0.25 4.09 16 34 H 0.21 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.09 1.26 6.33 -51.93 -0.33 0.93 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 40 H 0.06 0.82 4.92 -51.93 -0.26 0.57 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.41 7.35 -51.93 -0.38 1.02 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -37.09 379.96 -7.70 -44.78 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.72 Total: 0.36 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 0.92 Total: 15.51 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.23 Total: -52.11 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.93 Total: -29.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.44 Total: -1.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.09 -7.70 -44.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754520243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.358 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds