Wall clock time and date at job start Tue Mar 31 2020 23:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46582 * 2 1 4 4 C 1.38078 * 119.99581 * 180.02562 * 3 2 1 5 5 S 1.76205 * 126.05333 * 0.11592 * 4 3 2 6 6 C 1.75994 * 90.26933 * 180.22512 * 5 4 3 7 7 N 1.28391 * 110.17271 * 359.80676 * 6 5 4 8 8 C 1.33697 * 117.34658 * 0.02562 * 7 6 5 9 9 C 1.46258 * 122.83858 * 180.02562 * 8 7 6 10 10 O 1.21672 * 119.99760 * 180.02562 * 9 8 7 11 11 O 1.34916 * 120.00602 * 0.02562 * 9 8 7 12 12 C 1.42895 * 117.00521 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46880 * 329.99663 * 12 11 9 14 14 C 1.52997 * 109.47503 * 89.99787 * 12 11 9 15 15 C 1.50708 * 109.47227 * 210.00107 * 12 11 9 16 16 O 1.21280 * 119.99888 * 354.99553 * 15 12 11 17 17 N 1.34777 * 119.99928 * 174.99661 * 15 12 11 18 18 C 1.46496 * 119.99889 * 359.97438 * 17 15 12 19 19 C 1.46500 * 119.99779 * 179.97438 * 17 15 12 20 20 C 1.50694 * 109.46954 * 89.99836 * 19 17 15 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31517 * 120.00198 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99970 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46938 * 89.99678 * 24 22 20 26 26 H 1.48503 * 109.47406 * 209.99550 * 24 22 20 27 27 H 1.48494 * 109.47306 * 329.99829 * 24 22 20 28 28 H 1.09003 * 109.47459 * 59.99824 * 1 2 3 29 29 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47139 * 299.99658 * 1 2 3 31 31 H 1.08999 * 109.46623 * 240.00377 * 2 1 3 32 32 H 1.08989 * 109.47344 * 120.00237 * 2 1 3 33 33 H 0.96995 * 120.00489 * 0.02562 * 3 2 1 34 34 H 1.07997 * 124.90890 * 179.79196 * 6 5 4 35 35 H 1.09002 * 109.47153 * 60.00043 * 14 12 11 36 36 H 1.09001 * 109.46832 * 300.00234 * 14 12 11 37 37 H 1.09004 * 109.47261 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.47373 * 90.00178 * 18 17 15 39 39 H 1.09005 * 109.46584 * 209.99714 * 18 17 15 40 40 H 1.08999 * 109.47384 * 329.99408 * 18 17 15 41 41 H 1.08993 * 109.47001 * 209.99914 * 19 17 15 42 42 H 1.09002 * 109.47216 * 330.00108 * 19 17 15 43 43 H 0.97002 * 120.00096 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3758 1.6336 -0.0005 5 16 4.6557 0.4226 -0.0041 6 6 5.8713 1.6952 0.0045 7 7 5.3056 2.8478 0.0051 8 6 3.9690 2.8759 -0.0001 9 6 3.2019 4.1212 -0.0006 10 8 1.9857 4.0865 -0.0050 11 8 3.8428 5.3085 0.0038 12 6 3.0307 6.4842 0.0036 13 1 2.0935 6.2784 -0.5137 14 6 2.7362 6.9010 1.4460 15 6 3.7599 7.5983 -0.7023 16 8 4.9004 7.4328 -1.0800 17 7 3.1445 8.7786 -0.9139 18 6 1.7666 8.9782 -0.4582 19 6 3.8535 9.8617 -1.5997 20 6 3.6146 9.7578 -3.0839 21 1 2.9961 8.9645 -3.4771 22 6 4.1848 10.6760 -3.9399 23 7 3.9768 10.5851 -5.2354 24 14 5.2540 12.0485 -3.2599 25 1 6.6668 11.5943 -3.2046 26 1 5.1510 13.2393 -4.1412 27 1 4.7943 12.4031 -1.8931 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3879 2.1185 0.0004 34 1 6.9386 1.5304 0.0090 35 1 3.6733 7.1068 1.9632 36 1 2.2087 6.0952 1.9565 37 1 2.1163 7.7976 1.4457 38 1 1.7734 9.3716 0.5583 39 1 1.2646 9.6858 -1.1182 40 1 1.2364 8.0260 -0.4759 41 1 3.4858 10.8222 -1.2389 42 1 4.9216 9.7822 -1.3971 43 1 4.3776 11.2313 -5.8375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754520244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:56 Heat of formation + Delta-G solvation = -62.837042 kcal Electronic energy + Delta-G solvation = -27403.024019 eV Core-core repulsion = 23382.997712 eV Total energy + Delta-G solvation = -4020.026306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90065 -39.56472 -38.57195 -37.27874 -36.26767 -34.95274 -32.76594 -31.97492 -31.59263 -28.88466 -28.22610 -26.24914 -25.53200 -24.34302 -23.53097 -23.02399 -21.75278 -20.26794 -19.02125 -18.83556 -17.27651 -17.15616 -16.91365 -16.41357 -16.17685 -15.73781 -15.65647 -15.51023 -15.10913 -14.76563 -14.36350 -14.24698 -13.76168 -13.45587 -13.36925 -13.00423 -12.84383 -12.54485 -12.48747 -12.40329 -12.26610 -12.18922 -12.10056 -11.81237 -11.46882 -11.33773 -11.07342 -10.91937 -10.67619 -10.58401 -10.48971 -10.12250 -9.86120 -9.51907 -9.39251 -8.91806 -8.56489 -8.05103 -7.72918 -6.06220 -4.05303 0.48736 0.58687 1.30297 1.74760 2.65198 2.76504 3.14045 3.28517 3.31912 3.37712 3.39916 3.84337 4.18817 4.29531 4.42042 4.45407 4.68359 4.74862 4.81650 4.94350 5.06084 5.11550 5.13444 5.27137 5.27918 5.48380 5.50741 5.62472 5.68739 5.75125 5.83830 6.01516 6.20545 6.21289 6.42089 6.68608 6.93851 6.97894 7.29766 7.39919 7.62077 7.87992 8.18009 8.48483 8.90836 8.98179 9.53434 11.07205 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002573 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.681647 B =10878.678290 C =11364.713768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.671 5.671 4 C 0.181 3.819 5 S 0.067 5.933 6 C 0.021 3.979 7 N -0.374 5.374 8 C -0.115 4.115 9 C 0.558 3.442 10 O -0.533 6.533 11 O -0.296 6.296 12 C 0.068 3.932 13 H 0.105 0.895 14 C -0.170 4.170 15 C 0.511 3.489 16 O -0.513 6.513 17 N -0.593 5.593 18 C 0.077 3.923 19 C 0.217 3.783 20 C -0.530 4.530 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.897 5.897 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.265 1.265 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.427 0.573 34 H 0.210 0.790 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -23.250 15.818 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.305 5.305 4 C -0.054 4.054 5 S 0.309 5.691 6 C -0.285 4.285 7 N -0.083 5.083 8 C -0.247 4.247 9 C 0.404 3.596 10 O -0.425 6.425 11 O -0.210 6.210 12 C 0.008 3.992 13 H 0.122 0.878 14 C -0.227 4.227 15 C 0.295 3.705 16 O -0.388 6.388 17 N -0.327 5.327 18 C -0.067 4.067 19 C 0.097 3.903 20 C -0.569 4.569 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.190 1.190 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.272 0.728 34 H 0.226 0.774 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.665 -23.898 15.425 29.003 hybrid contribution -0.300 1.732 0.054 1.758 sum -5.965 -22.167 15.479 27.687 Atomic orbital electron populations 1.21975 0.93129 1.03688 1.03518 1.21763 0.96311 0.81640 1.02455 1.44609 1.01571 1.09896 1.74452 1.23862 0.90302 0.95611 0.95619 1.85078 0.97978 1.10917 1.75175 1.28564 1.02736 0.86622 1.10605 1.66213 1.07502 1.25772 1.08821 1.18684 0.88542 0.89713 1.27761 1.19573 0.84981 0.83393 0.71608 1.90690 1.14291 1.87415 1.50095 1.86390 1.39080 1.12904 1.82586 1.22226 0.94933 0.83545 0.98454 0.87755 1.22309 1.03385 1.03073 0.93968 1.19793 0.87200 0.83043 0.80432 1.90721 1.17724 1.80247 1.50084 1.47717 1.13921 1.13650 1.57376 1.21854 0.83479 1.02103 0.99229 1.19707 0.93284 0.84190 0.93116 1.21329 1.32154 1.14223 0.89184 0.90757 1.24859 0.95840 0.97630 0.94683 1.69901 1.44700 1.36680 1.02280 0.86836 0.81782 0.81772 0.79221 1.19817 1.21060 1.19016 0.91299 0.90101 0.91417 0.90872 0.90919 0.72798 0.77359 0.90988 0.91378 0.89431 0.93098 0.90168 0.92069 0.94868 0.94355 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.03 37.16 0.37 -0.35 16 2 C 0.10 0.59 6.37 -4.04 -0.03 0.56 16 3 N -0.67 -6.37 5.63 -59.04 -0.33 -6.70 16 4 C 0.18 2.08 7.29 -14.94 -0.11 1.97 16 5 S 0.07 0.55 22.68 -107.50 -2.44 -1.89 16 6 C 0.02 0.21 12.43 51.32 0.64 0.85 16 7 N -0.37 -5.57 10.46 -10.82 -0.11 -5.69 16 8 C -0.11 -1.73 6.74 -84.04 -0.57 -2.29 16 9 C 0.56 9.56 7.86 33.95 0.27 9.83 16 10 O -0.53 -8.68 13.72 -19.40 -0.27 -8.95 16 11 O -0.30 -5.77 9.21 -47.83 -0.44 -6.21 16 12 C 0.07 1.22 2.12 -27.88 -0.06 1.16 16 13 H 0.10 1.78 6.10 -51.93 -0.32 1.47 16 14 C -0.17 -2.34 9.25 37.16 0.34 -2.00 16 15 C 0.51 11.46 7.10 -10.98 -0.08 11.39 16 16 O -0.51 -13.94 16.09 -14.30 -0.23 -14.17 16 17 N -0.59 -12.76 2.86 -182.96 -0.52 -13.28 16 18 C 0.08 1.21 8.92 59.84 0.53 1.75 16 19 C 0.22 5.46 4.23 -5.20 -0.02 5.44 16 20 C -0.53 -15.66 9.94 -34.44 -0.34 -16.00 16 21 H 0.07 2.41 8.06 -52.48 -0.42 1.99 16 22 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 24 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 25 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.34 8.14 -51.94 -0.42 -0.08 16 33 H 0.43 4.54 6.05 -40.82 -0.25 4.29 16 34 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.03 5.12 -51.93 -0.27 0.77 16 38 H 0.05 0.64 7.02 -51.93 -0.36 0.28 16 39 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.06 0.83 6.08 -51.93 -0.32 0.52 16 41 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 42 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -38.51 374.41 -7.37 -45.87 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.63 Total: 1.19 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 0.86 Total: 14.34 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.19 Total: -53.11 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.94 Total: -29.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.44 Total: -1.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.51 -7.37 -45.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754520244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.964 kcal (2) G-P(sol) polarization free energy of solvation -38.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds