Wall clock time and date at job start Tue Mar 31 2020 23:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47007 * 2 1 4 4 C 1.38071 * 119.99840 * 179.97438 * 3 2 1 5 5 S 1.76202 * 126.05312 * 359.69224 * 4 3 2 6 6 C 1.75987 * 90.27141 * 180.26406 * 5 4 3 7 7 N 1.28394 * 110.17407 * 0.02562 * 6 5 4 8 8 C 1.33697 * 117.34689 * 359.97438 * 7 6 5 9 9 C 1.46257 * 122.84740 * 180.02562 * 8 7 6 10 10 O 1.21664 * 120.00339 * 179.97438 * 9 8 7 11 11 O 1.34922 * 119.99665 * 359.95953 * 9 8 7 12 12 C 1.42906 * 117.00219 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47298 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00085 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99958 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99783 * 0.02562 * 15 13 12 17 17 C 1.52999 * 109.47326 * 89.99784 * 16 15 13 18 18 C 1.46499 * 119.99880 * 179.97438 * 15 13 12 19 19 C 1.50703 * 109.47223 * 90.00194 * 18 15 13 20 20 H 1.08003 * 119.99610 * 0.02562 * 19 18 15 21 21 C 1.37868 * 120.00093 * 180.02562 * 19 18 15 22 22 N 1.31517 * 120.00364 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47288 * 89.99759 * 23 21 19 25 25 H 1.48497 * 109.47118 * 210.00050 * 23 21 19 26 26 H 1.48499 * 109.46969 * 329.99775 * 23 21 19 27 27 H 1.09003 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47709 * 299.99995 * 1 2 3 29 29 H 1.09007 * 109.47110 * 59.99931 * 1 2 3 30 30 H 1.09002 * 109.46854 * 240.00043 * 2 1 3 31 31 H 1.08994 * 109.46844 * 120.00146 * 2 1 3 32 32 H 0.97002 * 119.99791 * 0.02562 * 3 2 1 33 33 H 1.07994 * 124.91553 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.46583 * 300.00317 * 12 11 9 35 35 H 1.09000 * 109.46830 * 59.99817 * 12 11 9 36 36 H 1.09011 * 109.46851 * 209.99852 * 16 15 13 37 37 H 1.08998 * 109.47341 * 329.99041 * 16 15 13 38 38 H 1.09001 * 109.47070 * 179.97438 * 17 16 15 39 39 H 1.08994 * 109.47125 * 299.99752 * 17 16 15 40 40 H 1.09002 * 109.47046 * 60.00168 * 17 16 15 41 41 H 1.08998 * 109.46800 * 210.00385 * 18 15 13 42 42 H 1.09004 * 109.47362 * 330.00171 * 18 15 13 43 43 H 0.96990 * 120.00464 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3758 1.6335 0.0005 5 16 4.6556 0.4225 0.0089 6 6 5.8713 1.6950 0.0118 7 7 5.3057 2.8477 0.0074 8 6 3.9690 2.8759 0.0011 9 6 3.2019 4.1211 -0.0050 10 8 1.9857 4.0864 -0.0110 11 8 3.8429 5.3083 -0.0036 12 6 3.0307 6.4842 -0.0092 13 6 3.9143 7.7050 -0.0073 14 8 5.1207 7.5805 -0.0012 15 7 3.3639 8.9352 -0.0124 16 6 1.9067 9.0856 -0.0192 17 6 1.3929 9.1410 1.4209 18 6 4.2228 10.1220 -0.0100 19 6 4.5248 10.5265 -1.4300 20 1 4.1172 9.9567 -2.2520 21 6 5.3213 11.6237 -1.6797 22 7 5.8172 12.3179 -0.6787 23 14 5.6950 12.1255 -3.4398 24 1 4.6603 13.0799 -3.9128 25 1 7.0296 12.7740 -3.4969 26 1 5.6921 10.9215 -4.3090 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3879 2.1185 0.0004 33 1 6.9385 1.5303 0.0174 34 1 2.4058 6.4898 -0.9023 35 1 2.3972 6.4924 0.8777 36 1 1.6389 10.0072 -0.5362 37 1 1.4561 8.2367 -0.5333 38 1 0.3087 9.2534 1.4158 39 1 1.6606 8.2196 1.9379 40 1 1.8434 9.9901 1.9350 41 1 3.7122 10.9390 0.4998 42 1 5.1542 9.8954 0.5091 43 1 6.3772 13.0900 -0.8543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754526741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:50 Heat of formation + Delta-G solvation = -72.671288 kcal Electronic energy + Delta-G solvation = -26998.426878 eV Core-core repulsion = 22977.974127 eV Total energy + Delta-G solvation = -4020.452751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81092 -39.40830 -38.56884 -37.30288 -36.24753 -35.21484 -32.79285 -31.99609 -30.13905 -29.60509 -28.46206 -26.55028 -25.16799 -23.59563 -23.13764 -22.97652 -22.26161 -20.34328 -19.03083 -18.61957 -17.24283 -17.13906 -16.71127 -16.35660 -16.21564 -15.83239 -15.71268 -15.53826 -15.16662 -14.72745 -14.35009 -14.16150 -14.00011 -13.42423 -13.22628 -13.03624 -12.85178 -12.57695 -12.51752 -12.46298 -12.13092 -12.05310 -12.00506 -11.57639 -11.18547 -11.10026 -10.89818 -10.82075 -10.70871 -10.53492 -10.42414 -10.09953 -9.87001 -9.60897 -9.41361 -8.89135 -8.40372 -8.07556 -7.68091 -6.01231 -4.05808 0.46353 0.56449 1.28336 1.72791 2.64819 2.74720 3.11880 3.32892 3.35388 3.40190 3.46050 3.91493 4.20772 4.26439 4.42154 4.48136 4.66694 4.71981 4.94520 5.01879 5.08009 5.21635 5.24518 5.29179 5.33349 5.42407 5.46202 5.63541 5.70467 5.77723 6.03081 6.16880 6.23135 6.36904 6.48813 6.93622 7.05785 7.37477 7.46076 7.54396 7.86058 7.95488 8.25694 8.37126 8.91543 9.07085 9.59057 11.06963 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002447 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.643489 B =11439.360708 C =12401.119901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.672 5.672 4 C 0.181 3.819 5 S 0.067 5.933 6 C 0.022 3.978 7 N -0.373 5.373 8 C -0.115 4.115 9 C 0.557 3.443 10 O -0.535 6.535 11 O -0.300 6.300 12 C 0.047 3.953 13 C 0.507 3.493 14 O -0.513 6.513 15 N -0.594 5.594 16 C 0.103 3.897 17 C -0.170 4.170 18 C 0.248 3.752 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.427 0.573 33 H 0.210 0.790 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.045 0.955 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -27.372 3.421 29.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.306 5.306 4 C -0.054 4.054 5 S 0.308 5.692 6 C -0.284 4.284 7 N -0.083 5.083 8 C -0.247 4.247 9 C 0.403 3.597 10 O -0.427 6.427 11 O -0.213 6.213 12 C -0.031 4.031 13 C 0.291 3.709 14 O -0.388 6.388 15 N -0.328 5.328 16 C -0.022 4.022 17 C -0.229 4.229 18 C 0.129 3.871 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.272 0.728 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.623 -27.922 3.468 30.076 hybrid contribution -0.639 1.421 -0.984 1.843 sum -11.262 -26.501 2.484 28.902 Atomic orbital electron populations 1.21974 0.93145 1.03689 1.03492 1.21761 0.96286 0.81654 1.02463 1.44602 1.01570 1.09873 1.74541 1.23863 0.90289 0.95613 0.95684 1.85084 0.98001 1.10941 1.75154 1.28588 1.02759 0.86571 1.10497 1.66229 1.07476 1.25746 1.08804 1.18695 0.88556 0.89710 1.27751 1.19573 0.84912 0.83263 0.71922 1.90699 1.14290 1.87646 1.50037 1.86346 1.39145 1.13044 1.82770 1.22618 0.93457 0.83117 1.03886 1.19695 0.88610 0.83758 0.78805 1.90734 1.14299 1.85619 1.48178 1.48192 1.06505 1.06486 1.71581 1.21488 0.81235 1.02914 0.96526 1.22234 1.00652 1.02326 0.97645 1.19319 0.90079 0.80057 0.97608 1.21435 1.30996 1.11830 0.92275 0.92417 1.24931 0.95458 0.96255 0.97453 1.69929 1.33961 1.18803 1.30681 0.86488 0.77657 0.78580 0.84658 1.20678 1.21069 1.19858 0.90101 0.91380 0.91369 0.90897 0.90902 0.72820 0.77322 0.89032 0.89098 0.89500 0.91809 0.91989 0.93142 0.91807 0.94681 0.93697 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.03 37.16 0.37 -0.27 16 2 C 0.10 0.54 6.37 -4.04 -0.03 0.52 16 3 N -0.67 -6.05 5.63 -59.04 -0.33 -6.38 16 4 C 0.18 1.99 7.29 -14.95 -0.11 1.89 16 5 S 0.07 0.53 22.68 -107.50 -2.44 -1.91 16 6 C 0.02 0.22 12.43 51.33 0.64 0.86 16 7 N -0.37 -5.52 10.46 -10.82 -0.11 -5.63 16 8 C -0.11 -1.69 6.74 -84.04 -0.57 -2.25 16 9 C 0.56 9.31 7.90 33.95 0.27 9.58 16 10 O -0.53 -8.43 14.26 -19.39 -0.28 -8.71 16 11 O -0.30 -5.84 9.56 -47.86 -0.46 -6.30 16 12 C 0.05 0.85 4.41 36.00 0.16 1.01 16 13 C 0.51 11.47 7.75 -10.99 -0.09 11.38 16 14 O -0.51 -14.13 16.08 -14.35 -0.23 -14.36 16 15 N -0.59 -13.02 2.46 -175.06 -0.43 -13.45 16 16 C 0.10 1.69 5.93 -4.04 -0.02 1.66 16 17 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 18 C 0.25 6.61 5.16 -5.19 -0.03 6.59 16 19 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 20 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 23 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.43 4.31 6.05 -40.82 -0.25 4.06 16 33 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.09 1.47 7.39 -51.93 -0.38 1.08 16 35 H 0.09 1.40 7.17 -51.93 -0.37 1.03 16 36 H 0.09 1.46 8.07 -51.92 -0.42 1.04 16 37 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.68 7.22 -51.93 -0.38 0.30 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -37.09 383.37 -8.09 -45.18 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.86 Total: -0.36 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 0.56 Total: 15.10 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.14 Total: -51.69 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.97 Total: -29.36 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.44 Total: -1.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.09 -8.09 -45.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754526741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.490 kcal (2) G-P(sol) polarization free energy of solvation -37.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds