Wall clock time and date at job start Tue Mar 31 2020 23:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46785 * 2 1 4 4 O 1.45196 * 109.46988 * 119.99415 * 2 1 3 5 5 C 1.34225 * 117.00375 * 270.00055 * 4 2 1 6 6 O 1.20829 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00075 * 180.02562 * 5 4 2 8 8 C 1.50706 * 109.47057 * 180.02562 * 7 5 4 9 9 C 1.38256 * 119.99869 * 99.99402 * 8 7 5 10 10 C 1.38217 * 120.07116 * 179.97438 * 9 8 7 11 11 C 1.38260 * 120.06617 * 359.97438 * 10 9 8 12 12 C 1.38369 * 120.00355 * 0.02562 * 11 10 9 13 13 F 1.35090 * 120.03619 * 180.02562 * 12 11 10 14 14 C 1.38365 * 120.00021 * 279.97303 * 8 7 5 15 15 F 1.35104 * 120.03691 * 0.02562 * 14 8 7 16 16 C 1.50695 * 109.47163 * 240.00238 * 2 1 3 17 17 O 1.21284 * 119.99324 * 256.02518 * 16 2 1 18 18 N 1.34767 * 120.00546 * 76.02232 * 16 2 1 19 19 C 1.46505 * 120.00132 * 5.36497 * 18 16 2 20 20 C 1.46504 * 120.00223 * 185.36414 * 18 16 2 21 21 C 1.50705 * 109.46720 * 90.00093 * 20 18 16 22 22 H 1.08000 * 120.00258 * 0.02562 * 21 20 18 23 23 C 1.37887 * 119.99637 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99605 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47038 * 60.00459 * 25 23 21 27 27 H 1.48503 * 109.47105 * 179.97438 * 25 23 21 28 28 H 1.48488 * 109.47497 * 300.00217 * 25 23 21 29 29 H 1.09001 * 109.47000 * 306.13702 * 1 2 3 30 30 H 1.09003 * 109.47194 * 66.13835 * 1 2 3 31 31 H 1.09003 * 109.46687 * 186.14093 * 1 2 3 32 32 H 1.08996 * 109.47195 * 59.99997 * 7 5 4 33 33 H 1.08996 * 109.46961 * 299.99678 * 7 5 4 34 34 H 1.07997 * 119.96874 * 0.26343 * 9 8 7 35 35 H 1.07994 * 119.96741 * 180.02562 * 10 9 8 36 36 H 1.08007 * 119.99460 * 180.02562 * 11 10 9 37 37 H 1.08995 * 109.46930 * 84.81966 * 19 18 16 38 38 H 1.08995 * 109.47374 * 204.82368 * 19 18 16 39 39 H 1.09003 * 109.46734 * 324.82332 * 19 18 16 40 40 H 1.08995 * 109.47009 * 209.99733 * 20 18 16 41 41 H 1.08994 * 109.47174 * 330.00594 * 20 18 16 42 42 H 0.97000 * 119.99040 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6843 1.1856 5 6 2.2171 0.0642 2.2811 6 8 1.9973 1.2519 2.2505 7 6 2.7193 -0.5768 3.5492 8 6 2.8610 0.4733 4.6209 9 6 1.8809 0.6126 5.5860 10 6 2.0097 1.5748 6.5699 11 6 3.1190 2.3997 6.5912 12 6 4.1017 2.2628 5.6266 13 9 5.1861 3.0680 5.6471 14 6 3.9721 1.2976 4.6391 15 9 4.9302 1.1622 3.6962 16 6 2.0324 -0.7103 -1.2304 17 8 2.4736 -1.8366 -1.1426 18 7 1.9912 -0.0942 -2.4283 19 6 1.5689 1.3058 -2.5179 20 6 2.3689 -0.8243 -3.6410 21 6 1.1506 -1.4920 -4.2252 22 1 0.1910 -1.3829 -3.7417 23 6 1.2611 -2.2420 -5.3769 24 7 2.4298 -2.3752 -5.9652 25 14 -0.2488 -3.0702 -6.1006 26 1 -1.2637 -2.0403 -6.4392 27 1 0.1339 -3.8102 -7.3299 28 1 -0.8170 -4.0177 -5.1085 29 1 -0.3633 0.6060 0.8300 30 1 -0.3634 0.4157 -0.9398 31 1 -0.3633 -1.0218 0.1099 32 1 3.6884 -1.0398 3.3632 33 1 2.0104 -1.3370 3.8774 34 1 1.0161 -0.0342 5.5740 35 1 1.2433 1.6819 7.3232 36 1 3.2186 3.1509 7.3607 37 1 2.4228 1.9558 -2.3268 38 1 1.1773 1.5041 -3.5155 39 1 0.7924 1.4991 -1.7777 40 1 2.7860 -0.1286 -4.3689 41 1 3.1136 -1.5805 -3.3928 42 1 2.5075 -2.9031 -6.7752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756493645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:37 Heat of formation + Delta-G solvation = -178.518632 kcal Electronic energy + Delta-G solvation = -29297.406469 eV Core-core repulsion = 24686.230694 eV Total energy + Delta-G solvation = -4611.175774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.76851 -48.84776 -40.85877 -39.49254 -38.80074 -36.47954 -34.90122 -33.51247 -32.81671 -31.60460 -30.73322 -28.55621 -27.79016 -26.08347 -24.58236 -23.36667 -23.26056 -22.28444 -20.77749 -18.86903 -18.25443 -18.03693 -17.71198 -17.31542 -16.71432 -16.58334 -16.46994 -16.15864 -15.80909 -15.28404 -15.23119 -15.04419 -14.76412 -14.66027 -14.32438 -14.04272 -13.70862 -13.44864 -13.15103 -12.94826 -12.62191 -12.49030 -12.33537 -12.27324 -12.10196 -12.08222 -11.76139 -11.68263 -11.44650 -11.24736 -10.95015 -10.76054 -10.67849 -10.56103 -10.19548 -9.69570 -9.41297 -9.12413 -8.93261 -8.46657 -7.73920 -6.07707 -4.13256 0.45934 0.53291 2.06261 2.37841 2.98758 3.21722 3.29788 3.34487 3.36906 3.37916 3.85971 3.88831 4.02052 4.22032 4.40792 4.43614 4.60777 4.63565 4.82129 4.85589 5.02137 5.02281 5.09476 5.26648 5.28244 5.37165 5.50550 5.51259 5.62004 5.65288 5.70221 5.76418 5.85633 6.05797 6.21878 6.29491 6.38132 6.97242 7.38557 7.44667 7.62974 7.87965 8.17705 8.27449 8.81576 8.96637 9.51729 11.00387 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.002222 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.102531 B =12595.586211 C =12935.908685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.323 6.323 5 C 0.463 3.537 6 O -0.504 6.504 7 C -0.076 4.076 8 C -0.083 4.083 9 C -0.086 4.086 10 C -0.100 4.100 11 C -0.123 4.123 12 C 0.067 3.933 13 F -0.128 7.128 14 C 0.088 3.912 15 F -0.122 7.122 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.245 3.755 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.893 5.893 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 9.579 26.121 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.239 6.239 5 C 0.305 3.695 6 O -0.391 6.391 7 C -0.113 4.113 8 C -0.084 4.084 9 C -0.104 4.104 10 C -0.118 4.118 11 C -0.142 4.142 12 C 0.047 3.953 13 F -0.106 7.106 14 C 0.068 3.932 15 F -0.101 7.101 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.759 9.265 25.878 27.543 hybrid contribution -0.459 -0.062 -0.792 0.917 sum -2.218 9.203 25.086 26.813 Atomic orbital electron populations 1.22160 0.92024 1.04128 1.03828 1.22698 0.96081 0.97400 0.82606 0.87959 1.86613 1.76379 1.41351 1.19514 1.23392 0.74631 0.85963 0.85497 1.90672 1.47831 1.16392 1.84255 1.20218 1.06030 0.97118 0.87913 1.19267 0.93867 0.97477 0.97793 1.21042 0.97690 0.98349 0.93317 1.21055 0.97341 0.94601 0.98839 1.21138 0.93378 1.01298 0.98396 1.17639 0.87136 0.92628 0.97873 1.91540 1.51945 1.71023 1.96132 1.17512 0.88914 0.97943 0.88864 1.91559 1.61433 1.94841 1.62247 1.19744 0.80227 0.86837 0.83780 1.90696 1.45165 1.18411 1.85327 1.48079 1.65254 1.11915 1.07716 1.21836 0.99009 0.82661 1.03544 1.19372 0.96705 0.92078 0.79153 1.21382 0.94729 1.31576 1.09234 0.92416 1.24946 0.96281 0.96121 0.96725 1.69927 1.23206 1.40326 1.19726 0.86536 0.82737 0.79620 0.78399 1.20221 1.21136 1.20135 0.91285 0.89432 0.90588 0.85795 0.85404 0.83934 0.83925 0.83584 0.93409 0.90031 0.92270 0.94611 0.93551 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.19 37.16 0.34 -1.96 16 2 C 0.07 1.18 2.14 -27.88 -0.06 1.12 16 3 H 0.10 1.60 6.31 -51.93 -0.33 1.28 16 4 O -0.32 -5.28 9.47 -45.74 -0.43 -5.71 16 5 C 0.46 6.32 7.92 36.01 0.29 6.61 16 6 O -0.50 -7.79 15.17 -18.75 -0.28 -8.07 16 7 C -0.08 -0.70 5.67 -29.03 -0.16 -0.87 16 8 C -0.08 -0.77 4.43 -104.57 -0.46 -1.23 16 9 C -0.09 -0.56 9.67 -39.58 -0.38 -0.95 16 10 C -0.10 -0.55 10.04 -39.58 -0.40 -0.95 16 11 C -0.12 -0.85 10.02 -39.52 -0.40 -1.25 16 12 C 0.07 0.68 7.31 -39.37 -0.29 0.39 16 13 F -0.13 -1.45 17.18 2.25 0.04 -1.41 16 14 C 0.09 0.99 7.13 -39.37 -0.28 0.71 16 15 F -0.12 -1.64 16.58 2.25 0.04 -1.60 16 16 C 0.51 11.01 6.95 -10.99 -0.08 10.93 16 17 O -0.52 -13.51 16.13 -13.54 -0.22 -13.73 16 18 N -0.60 -12.79 2.86 -182.96 -0.52 -13.31 16 19 C 0.07 1.17 9.79 59.85 0.59 1.76 16 20 C 0.25 6.43 5.18 -5.19 -0.03 6.40 16 21 C -0.53 -14.85 9.39 -34.43 -0.32 -15.18 16 22 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 23 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 24 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 25 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.18 6.33 -51.93 -0.33 0.85 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 1.08 7.95 -51.93 -0.41 0.67 16 33 H 0.13 0.77 8.00 -51.93 -0.42 0.35 16 34 H 0.14 0.57 8.03 -52.49 -0.42 0.14 16 35 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 36 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 39 H 0.06 0.79 4.92 -51.93 -0.26 0.53 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -35.96 373.47 -6.82 -42.78 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.04 Total: -2.67 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -1.74 Total: 7.19 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.21 Total: -38.98 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.94 Total: -27.52 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.96 -6.82 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756493645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.741 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds