Wall clock time and date at job start Tue Mar 31 2020 23:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46489 * 109.46798 * 2 1 4 4 C 1.46508 * 120.00162 * 269.99980 * 3 2 1 5 5 C 1.50698 * 109.47013 * 270.00328 * 4 3 2 6 6 H 1.07998 * 120.00193 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00053 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00170 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99921 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46933 * 89.99867 * 9 7 5 11 11 H 1.48498 * 109.47100 * 209.99712 * 9 7 5 12 12 H 1.48501 * 109.47154 * 329.99940 * 9 7 5 13 13 C 1.34774 * 120.00513 * 90.00249 * 3 2 1 14 14 O 1.21284 * 120.00650 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99454 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46927 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99930 * 180.02562 * 16 15 13 18 18 O 1.20823 * 120.00112 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00147 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47361 * 179.97438 * 19 17 16 21 21 C 1.38224 * 119.99213 * 265.02473 * 20 19 17 22 22 C 1.38187 * 120.05295 * 179.97438 * 21 20 19 23 23 C 1.38492 * 120.02416 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.00943 * 179.97438 * 23 22 21 25 25 C 1.38397 * 119.97529 * 359.72914 * 23 22 21 26 26 C 1.38445 * 119.94721 * 0.52975 * 25 23 22 27 27 F 1.35104 * 120.01039 * 179.74070 * 26 25 23 28 28 H 1.09000 * 109.46991 * 60.00376 * 1 2 3 29 29 H 1.09010 * 109.46971 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47264 * 299.99603 * 1 2 3 31 31 H 1.09005 * 109.46937 * 240.00187 * 2 1 3 32 32 H 1.08998 * 109.46831 * 120.00142 * 2 1 3 33 33 H 1.08997 * 109.47166 * 30.00030 * 4 3 2 34 34 H 1.08998 * 109.47321 * 150.00238 * 4 3 2 35 35 H 0.97004 * 119.99816 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47380 * 60.00180 * 15 13 3 37 37 H 1.08998 * 109.46750 * 299.99612 * 15 13 3 38 38 H 1.09000 * 109.47241 * 59.99481 * 19 17 16 39 39 H 1.08998 * 109.47060 * 299.99706 * 19 17 16 40 40 H 1.08009 * 119.97191 * 359.97414 * 21 20 19 41 41 H 1.07999 * 119.98601 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.03007 * 180.27174 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 5.3912 2.1835 -3.2574 9 14 3.0123 3.4340 -3.9300 10 1 3.1146 4.8545 -3.5092 11 1 3.4058 3.3108 -5.3565 12 1 1.6128 2.9671 -3.7603 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1960 3.5759 17 6 2.1344 1.7123 4.8163 18 8 1.7351 0.5830 4.9746 19 6 2.4405 2.5778 6.0114 20 6 2.1664 1.8042 7.2753 21 6 0.9454 1.9295 7.9111 22 6 0.6925 1.2204 9.0698 23 6 1.6626 0.3834 9.5957 24 9 1.4152 -0.3094 10.7289 25 6 2.8836 0.2532 8.9572 26 6 3.1377 0.9683 7.7994 27 9 4.3312 0.8462 7.1779 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 5.7172 2.5740 -4.0833 36 1 2.6212 0.4186 2.5302 37 1 0.9432 1.0126 2.5298 38 1 1.8111 3.4674 5.9865 39 1 3.4892 2.8739 5.9865 40 1 0.1885 2.5823 7.5018 41 1 -0.2619 1.3188 9.5655 42 1 3.6391 -0.4025 9.3642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756617824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:01 Heat of formation + Delta-G solvation = -178.898098 kcal Electronic energy + Delta-G solvation = -28783.346648 eV Core-core repulsion = 24172.154419 eV Total energy + Delta-G solvation = -4611.192229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.42610 -49.37626 -40.78676 -39.44008 -38.91419 -36.49994 -35.44540 -33.32196 -32.78041 -31.28134 -30.50127 -29.57940 -28.11217 -26.77374 -23.70703 -23.11414 -23.05623 -22.22298 -20.92217 -18.75838 -18.61378 -17.99132 -17.75357 -17.08572 -16.85949 -16.63293 -16.40722 -16.27037 -15.98432 -15.75227 -15.62824 -15.12974 -14.88967 -14.76386 -14.34220 -14.05625 -13.68312 -13.59317 -13.36235 -12.96632 -12.69258 -12.50522 -12.39650 -12.38537 -12.25533 -12.12630 -11.87711 -11.81659 -11.49567 -11.05722 -10.93721 -10.73431 -10.62975 -10.54117 -10.19894 -9.58613 -9.53124 -9.17287 -9.08868 -8.62068 -7.85635 -6.11568 -4.11068 0.41359 0.56121 2.03366 2.31211 2.94772 3.12882 3.27010 3.32794 3.34718 3.41969 3.74200 3.90122 4.01776 4.08511 4.36587 4.37156 4.59406 4.65772 4.75629 4.92082 5.06012 5.06677 5.12641 5.21479 5.27740 5.31768 5.34168 5.46162 5.46517 5.55677 5.62645 5.70078 5.90109 6.07399 6.23341 6.30454 6.32343 6.62851 6.86796 7.21251 7.55385 7.58428 8.07652 8.41864 8.78164 8.91916 9.47767 11.01666 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002113 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.457607 B =13246.213367 C =13630.043824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.327 6.327 17 C 0.463 3.537 18 O -0.504 6.504 19 C -0.073 4.073 20 C -0.120 4.120 21 C -0.045 4.045 22 C -0.163 4.163 23 C 0.133 3.867 24 F -0.131 7.131 25 C -0.191 4.191 26 C 0.150 3.850 27 F -0.125 7.125 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -3.291 24.242 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.242 6.242 17 C 0.305 3.695 18 O -0.392 6.392 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.063 4.063 22 C -0.182 4.182 23 C 0.113 3.887 24 F -0.110 7.110 25 C -0.211 4.211 26 C 0.131 3.869 27 F -0.103 7.103 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.283 -3.007 24.093 26.774 hybrid contribution -0.238 0.008 -0.616 0.660 sum -11.521 -2.999 23.478 26.324 Atomic orbital electron populations 1.22246 0.96474 1.01895 1.02301 1.21545 0.93656 0.83560 1.03528 1.47873 1.64188 1.13543 1.06473 1.19705 0.97549 0.93425 0.79507 1.21308 0.95250 1.33181 1.07241 0.90694 1.24857 0.95026 0.95775 0.97338 1.69894 1.15106 1.44827 1.23551 0.86847 0.81399 0.81619 0.79793 1.19848 1.21032 1.19062 1.19715 0.79444 0.87122 0.84304 1.90719 1.44256 1.17592 1.86741 1.22945 1.02790 0.92690 0.84187 1.86549 1.78516 1.44885 1.14228 1.23464 0.74532 0.86908 0.84568 1.90686 1.42109 1.19754 1.86674 1.20179 1.06899 0.97831 0.86133 1.19405 0.94759 1.00384 0.97612 1.20788 0.94953 0.97263 0.93286 1.21176 1.00077 0.98747 0.98176 1.17318 0.93932 0.93396 0.84007 1.91541 1.94475 1.77195 1.47748 1.21012 0.98577 1.04362 0.97147 1.17107 0.81726 0.96488 0.91626 1.91565 1.42846 1.94353 1.81515 0.91958 0.91673 0.93053 0.89144 0.91386 0.94873 0.94405 0.92499 0.88419 0.88612 0.85551 0.85847 0.83583 0.83715 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.76 2.46 -175.06 -0.43 -12.19 16 4 C 0.22 5.21 4.23 -5.19 -0.02 5.19 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 9 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.51 10.34 7.75 -10.98 -0.09 10.26 16 14 O -0.52 -12.79 16.08 -14.11 -0.23 -13.01 16 15 C 0.05 0.80 4.50 36.01 0.16 0.96 16 16 O -0.33 -5.10 9.75 -45.90 -0.45 -5.55 16 17 C 0.46 5.99 7.95 36.00 0.29 6.27 16 18 O -0.50 -7.45 15.78 -18.75 -0.30 -7.74 16 19 C -0.07 -0.64 5.71 -29.04 -0.17 -0.81 16 20 C -0.12 -1.06 4.38 -104.55 -0.46 -1.51 16 21 C -0.04 -0.30 9.67 -39.60 -0.38 -0.69 16 22 C -0.16 -1.09 10.02 -39.51 -0.40 -1.49 16 23 C 0.13 1.08 7.30 -39.43 -0.29 0.79 16 24 F -0.13 -1.13 17.27 2.25 0.04 -1.09 16 25 C -0.19 -1.64 10.01 -39.45 -0.39 -2.04 16 26 C 0.15 1.47 7.24 -39.43 -0.29 1.19 16 27 F -0.12 -1.40 16.57 2.25 0.04 -1.36 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.10 1.42 7.39 -51.93 -0.38 1.03 16 37 H 0.10 1.25 7.18 -51.93 -0.37 0.88 16 38 H 0.13 0.74 8.05 -51.93 -0.42 0.32 16 39 H 0.12 1.00 7.79 -51.93 -0.40 0.59 16 40 H 0.15 0.62 8.06 -52.48 -0.42 0.19 16 41 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -35.96 373.38 -6.84 -42.80 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.14 Total: -1.96 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.11 Total: 4.53 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.34 Total: -38.82 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.97 Total: -26.31 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.96 -6.84 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756617824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.095 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds