Wall clock time and date at job start Tue Mar 31 2020 23:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.46624 * 2 1 4 4 O 1.45199 * 109.46985 * 240.00737 * 2 1 3 5 5 C 1.34227 * 117.00346 * 89.99874 * 4 2 1 6 6 O 1.20830 * 119.99699 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00291 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47401 * 179.97438 * 7 5 4 9 9 C 1.38224 * 119.99194 * 264.97832 * 8 7 5 10 10 C 1.38186 * 120.05276 * 179.97438 * 9 8 7 11 11 C 1.38492 * 120.02401 * 359.97438 * 10 9 8 12 12 F 1.35107 * 120.01136 * 180.02562 * 11 10 9 13 13 C 1.38396 * 119.97620 * 359.79120 * 11 10 9 14 14 C 1.38445 * 119.94704 * 0.43906 * 13 11 10 15 15 F 1.35104 * 120.01039 * 179.81237 * 14 13 11 16 16 C 1.50693 * 109.47260 * 120.00167 * 2 1 3 17 17 O 1.21287 * 120.00011 * 119.99890 * 16 2 1 18 18 N 1.34780 * 120.00487 * 300.00140 * 16 2 1 19 19 C 1.46500 * 119.99446 * 359.97438 * 18 16 2 20 20 C 1.46493 * 120.00248 * 179.97438 * 18 16 2 21 21 C 1.50710 * 109.46936 * 90.00150 * 20 18 16 22 22 H 1.07992 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.37879 * 119.99710 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99654 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47396 * 59.99595 * 25 23 21 27 27 H 1.48500 * 109.47250 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46907 * 299.99428 * 25 23 21 29 29 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46914 * 299.99571 * 1 2 3 31 31 H 1.09000 * 109.47285 * 59.99130 * 1 2 3 32 32 H 1.09001 * 109.46931 * 59.99337 * 7 5 4 33 33 H 1.08999 * 109.46996 * 299.99790 * 7 5 4 34 34 H 1.08000 * 119.97482 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.98603 * 180.02562 * 10 9 8 36 36 H 1.07999 * 120.03048 * 180.25272 * 13 11 10 37 37 H 1.09004 * 109.46823 * 90.00142 * 19 18 16 38 38 H 1.08999 * 109.46876 * 209.99737 * 19 18 16 39 39 H 1.08994 * 109.47668 * 330.00354 * 19 18 16 40 40 H 1.08999 * 109.47103 * 209.99726 * 20 18 16 41 41 H 1.09001 * 109.47410 * 330.00592 * 20 18 16 42 42 H 0.97002 * 119.99747 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6843 -1.1856 5 6 2.2171 0.0642 -2.2811 6 8 1.9973 1.2520 -2.2505 7 6 2.7182 -0.5769 -3.5496 8 6 2.8601 0.4732 -4.6211 9 6 1.8341 0.6828 -5.5233 10 6 1.9627 1.6458 -6.5061 11 6 3.1198 2.4024 -6.5877 12 9 3.2451 3.3442 -7.5483 13 6 4.1458 2.1968 -5.6819 14 6 4.0178 1.2285 -4.7007 15 9 5.0201 1.0241 -3.8182 16 6 2.0324 -0.7104 1.2304 17 8 2.7297 -1.6965 1.1190 18 7 1.7069 -0.2501 2.4546 19 6 0.8650 0.9414 2.5890 20 6 2.1948 -0.9410 3.6506 21 6 3.5225 -0.3580 4.0610 22 1 3.9593 0.4464 3.4880 23 6 4.1800 -0.8524 5.1676 24 7 3.6483 -1.8323 5.8651 25 14 5.8254 -0.1293 5.6767 26 1 5.6602 1.3163 5.9736 27 1 6.3201 -0.8297 6.8890 28 1 6.8037 -0.2992 4.5724 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 2.0087 -1.3366 -3.8775 33 1 3.6871 -1.0405 -3.3642 34 1 0.9309 0.0941 -5.4597 35 1 1.1603 1.8089 -7.2102 36 1 5.0468 2.7891 -5.7422 37 1 -0.1831 0.6438 2.6222 38 1 1.1229 1.4665 3.5087 39 1 1.0288 1.6002 1.7363 40 1 1.4768 -0.8155 4.4610 41 1 2.3156 -2.0023 3.4333 42 1 4.1107 -2.1799 6.6438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756621646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:41 Heat of formation + Delta-G solvation = -176.056674 kcal Electronic energy + Delta-G solvation = -29173.481757 eV Core-core repulsion = 24562.412741 eV Total energy + Delta-G solvation = -4611.069016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.39674 -49.32488 -40.83978 -39.44857 -38.79107 -36.44619 -34.97394 -33.35550 -32.87135 -31.55509 -31.22682 -28.17231 -27.62616 -26.25614 -24.48075 -23.66815 -23.17567 -22.19701 -20.74870 -18.92150 -18.59848 -18.01764 -17.70036 -16.86197 -16.55501 -16.37961 -16.32385 -16.05260 -15.80561 -15.73719 -15.56293 -15.09051 -14.81973 -14.62663 -14.37735 -14.10443 -13.73611 -13.39069 -13.24914 -12.92207 -12.54004 -12.43231 -12.37193 -12.19860 -12.17938 -12.08821 -11.79684 -11.64406 -11.40272 -11.16661 -10.94485 -10.73451 -10.64290 -10.56939 -10.18425 -9.68617 -9.49907 -9.08406 -8.92825 -8.45823 -7.75442 -6.07214 -4.12287 0.44673 0.59264 2.09045 2.39300 2.99129 3.23513 3.31553 3.35650 3.40108 3.45564 3.86587 3.93780 4.05168 4.11730 4.39888 4.42620 4.62507 4.63734 4.82420 4.93801 4.98061 5.07242 5.10920 5.27399 5.33465 5.36689 5.45918 5.51631 5.58490 5.62148 5.62918 5.72979 5.81276 5.95800 6.19491 6.30138 6.39830 6.95824 7.36621 7.43934 7.65520 7.88630 8.18332 8.26482 8.82317 8.97103 9.52832 11.00873 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002399 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.527915 B =11669.078224 C =12563.745549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.106 0.894 4 O -0.323 6.323 5 C 0.463 3.537 6 O -0.504 6.504 7 C -0.073 4.073 8 C -0.120 4.120 9 C -0.045 4.045 10 C -0.163 4.163 11 C 0.133 3.867 12 F -0.131 7.131 13 C -0.191 4.191 14 C 0.151 3.849 15 F -0.124 7.124 16 C 0.508 3.492 17 O -0.519 6.519 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.530 4.530 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 6.490 -24.454 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.124 0.876 4 O -0.238 6.238 5 C 0.305 3.695 6 O -0.392 6.392 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.063 4.063 10 C -0.182 4.182 11 C 0.113 3.887 12 F -0.110 7.110 13 C -0.211 4.211 14 C 0.131 3.869 15 F -0.102 7.102 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.329 5.329 19 C -0.068 4.068 20 C 0.129 3.871 21 C -0.569 4.569 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.066 6.213 -24.267 26.028 hybrid contribution 1.149 0.827 0.440 1.483 sum -5.917 7.040 -23.827 25.540 Atomic orbital electron populations 1.22398 0.92393 1.04085 1.04313 1.22633 0.95682 0.97685 0.82817 0.87636 1.86594 1.76438 1.41339 1.19454 1.23448 0.74557 0.85987 0.85474 1.90670 1.47850 1.16407 1.84272 1.20182 1.05971 0.97109 0.87817 1.19409 0.94202 0.99619 0.98895 1.20768 0.97436 0.96009 0.92100 1.21164 0.97645 0.97817 1.01599 1.17316 0.94808 0.88883 0.87673 1.91542 1.96195 1.62266 1.60980 1.21017 1.01569 1.01559 0.96956 1.17126 0.85624 0.95574 0.88583 1.91576 1.58608 1.93696 1.66310 1.19766 0.81730 0.85413 0.83830 1.90709 1.36898 1.26013 1.85868 1.48063 1.49852 1.28330 1.06674 1.21887 0.93948 0.88038 1.02947 1.19351 0.94369 0.93735 0.79691 1.21388 1.04852 1.19260 1.11381 0.92481 1.24929 0.97982 0.94907 0.96194 1.69920 1.39079 1.25941 1.18350 0.86544 0.83819 0.79052 0.77942 1.20215 1.21113 1.20119 0.90965 0.88847 0.91393 0.85665 0.85867 0.83630 0.83741 0.83189 0.92996 0.90292 0.92304 0.94578 0.93631 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.18 37.16 0.34 -1.84 16 2 C 0.07 1.15 2.18 -27.88 -0.06 1.09 16 3 H 0.11 1.70 6.42 -51.92 -0.33 1.37 16 4 O -0.32 -5.24 9.41 -45.89 -0.43 -5.67 16 5 C 0.46 6.34 7.92 36.00 0.29 6.62 16 6 O -0.50 -7.83 15.25 -18.75 -0.29 -8.11 16 7 C -0.07 -0.69 5.71 -29.04 -0.17 -0.85 16 8 C -0.12 -1.12 4.38 -104.55 -0.46 -1.58 16 9 C -0.05 -0.32 9.67 -39.61 -0.38 -0.70 16 10 C -0.16 -1.14 10.02 -39.51 -0.40 -1.54 16 11 C 0.13 1.14 7.30 -39.43 -0.29 0.85 16 12 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 13 C -0.19 -1.76 10.01 -39.45 -0.39 -2.16 16 14 C 0.15 1.59 7.24 -39.43 -0.29 1.30 16 15 F -0.12 -1.53 16.57 2.25 0.04 -1.49 16 16 C 0.51 10.86 7.15 -10.99 -0.08 10.78 16 17 O -0.52 -13.46 16.08 -14.11 -0.23 -13.69 16 18 N -0.60 -12.56 2.86 -182.96 -0.52 -13.08 16 19 C 0.08 1.16 8.80 59.85 0.53 1.69 16 20 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 21 C -0.53 -15.04 9.39 -34.43 -0.32 -15.37 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 25 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.04 4.53 -51.93 -0.24 0.80 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.13 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.12 1.11 7.79 -51.93 -0.40 0.70 16 34 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 38 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 39 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -35.64 371.07 -6.84 -42.48 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.95 Total: -2.46 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.80 Total: 6.36 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.21 Total: -38.79 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.95 Total: -27.47 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.64 -6.84 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756621646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.577 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds