Wall clock time and date at job start Tue Mar 31 2020 23:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46865 * 2 1 4 4 O 1.45195 * 109.47358 * 119.99928 * 2 1 3 5 5 C 1.34230 * 117.00247 * 269.99803 * 4 2 1 6 6 O 1.20824 * 119.99437 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00041 * 179.97438 * 5 4 2 8 8 C 1.50697 * 109.46872 * 180.02562 * 7 5 4 9 9 C 1.38234 * 119.98833 * 100.00194 * 8 7 5 10 10 C 1.38189 * 120.05140 * 180.25445 * 9 8 7 11 11 C 1.38499 * 120.02228 * 359.44525 * 10 9 8 12 12 F 1.35100 * 120.01263 * 180.27861 * 11 10 9 13 13 C 1.38395 * 119.97444 * 0.55231 * 11 10 9 14 14 C 1.38436 * 119.95129 * 359.72760 * 13 11 10 15 15 F 1.35106 * 120.01406 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.46908 * 240.00446 * 2 1 3 17 17 O 1.21287 * 119.99658 * 256.02071 * 16 2 1 18 18 N 1.34770 * 120.00585 * 76.02572 * 16 2 1 19 19 C 1.46498 * 119.99715 * 5.35826 * 18 16 2 20 20 C 1.46496 * 120.00472 * 185.36533 * 18 16 2 21 21 C 1.50704 * 109.47109 * 89.99260 * 20 18 16 22 22 H 1.08001 * 120.00025 * 0.02562 * 21 20 18 23 23 C 1.37876 * 119.99995 * 180.02562 * 21 20 18 24 24 N 1.31522 * 119.99938 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00335 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46672 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47300 * 119.99913 * 25 23 21 28 28 H 1.48496 * 109.46895 * 240.00359 * 25 23 21 29 29 H 1.08997 * 109.47645 * 66.14023 * 1 2 3 30 30 H 1.09009 * 109.46984 * 186.13916 * 1 2 3 31 31 H 1.09000 * 109.47348 * 306.13440 * 1 2 3 32 32 H 1.09001 * 109.46841 * 60.00745 * 7 5 4 33 33 H 1.08993 * 109.47316 * 300.00262 * 7 5 4 34 34 H 1.08000 * 119.97234 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.98845 * 179.70838 * 10 9 8 36 36 H 1.08001 * 120.02544 * 179.74316 * 13 11 10 37 37 H 1.09006 * 109.47068 * 84.82418 * 19 18 16 38 38 H 1.09005 * 109.47579 * 204.82596 * 19 18 16 39 39 H 1.09005 * 109.47571 * 324.82726 * 19 18 16 40 40 H 1.08993 * 109.47325 * 209.99962 * 20 18 16 41 41 H 1.09002 * 109.47163 * 330.00013 * 20 18 16 42 42 H 0.97002 * 119.99624 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2172 0.0640 2.2811 6 8 1.9974 1.2517 2.2505 7 6 2.7184 -0.5772 3.5494 8 6 2.8604 0.4728 4.6210 9 6 1.8801 0.6126 5.5856 10 6 2.0065 1.5786 6.5657 11 6 3.1212 2.4002 6.5893 12 9 3.2472 3.3407 7.5509 13 6 4.1033 2.2611 5.6241 14 6 3.9728 1.2969 4.6393 15 9 4.9305 1.1603 3.6962 16 6 2.0323 -0.7103 -1.2305 17 8 2.4736 -1.8366 -1.1428 18 7 1.9912 -0.0941 -2.4284 19 6 1.5688 1.3058 -2.5178 20 6 2.3687 -0.8241 -3.6411 21 6 1.1504 -1.4918 -4.2253 22 1 0.1909 -1.3829 -3.7418 23 6 1.2609 -2.2418 -5.3770 24 7 2.4295 -2.3749 -5.9655 25 14 -0.2493 -3.0688 -6.1015 26 1 -1.4323 -2.7670 -5.2562 27 1 -0.4804 -2.5598 -7.4772 28 1 -0.0355 -4.5376 -6.1465 29 1 -0.3634 0.4157 -0.9398 30 1 -0.3633 -1.0219 0.1099 31 1 -0.3634 0.6060 0.8300 32 1 3.6873 -1.0408 3.3639 33 1 2.0090 -1.3369 3.8774 34 1 1.0127 -0.0305 5.5705 35 1 1.2377 1.6901 7.3160 36 1 4.9709 2.9041 5.6393 37 1 2.4227 1.9559 -2.3267 38 1 1.1772 1.5043 -3.5155 39 1 0.7923 1.4991 -1.7776 40 1 2.7859 -0.1284 -4.3690 41 1 3.1135 -1.5803 -3.3930 42 1 2.5072 -2.9028 -6.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756621648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:44 Heat of formation + Delta-G solvation = -180.099829 kcal Electronic energy + Delta-G solvation = -29123.225419 eV Core-core repulsion = 24511.981079 eV Total energy + Delta-G solvation = -4611.244340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.41686 -49.35136 -40.84689 -39.44706 -38.78236 -36.46718 -34.90657 -33.36574 -32.80774 -31.59762 -31.24719 -28.15349 -27.77810 -26.08490 -24.53616 -23.68565 -23.19524 -22.20477 -20.74757 -18.86834 -18.61896 -18.01959 -17.71677 -16.87698 -16.56024 -16.40734 -16.35714 -16.04390 -15.85950 -15.75167 -15.56741 -14.98568 -14.82953 -14.66265 -14.39172 -14.20117 -13.72392 -13.40028 -13.14639 -12.90505 -12.48619 -12.45274 -12.34664 -12.20672 -12.12962 -12.10109 -11.81864 -11.74263 -11.44650 -11.26190 -10.92685 -10.76037 -10.67319 -10.58153 -10.20234 -9.66598 -9.51996 -9.10143 -8.93223 -8.48003 -7.74325 -6.08640 -4.14014 0.42774 0.57276 2.07134 2.37700 2.97125 3.21325 3.27153 3.35081 3.38927 3.43423 3.87327 3.92105 4.02984 4.09486 4.38184 4.40229 4.60646 4.64721 4.83846 4.93117 5.02319 5.06690 5.10167 5.25975 5.31683 5.34931 5.46380 5.51175 5.56587 5.65285 5.70280 5.70967 5.84831 6.05535 6.21544 6.28278 6.38669 6.96584 7.37863 7.44422 7.63833 7.87392 8.16962 8.26868 8.81242 8.96353 9.51188 10.99485 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.002116 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.139054 B =13231.293818 C =13418.066538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.324 6.324 5 C 0.462 3.538 6 O -0.504 6.504 7 C -0.073 4.073 8 C -0.121 4.121 9 C -0.046 4.046 10 C -0.163 4.163 11 C 0.133 3.867 12 F -0.131 7.131 13 C -0.192 4.192 14 C 0.152 3.848 15 F -0.124 7.124 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 9.430 25.091 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.239 6.239 5 C 0.304 3.696 6 O -0.392 6.392 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.064 4.064 10 C -0.182 4.182 11 C 0.113 3.887 12 F -0.110 7.110 13 C -0.211 4.211 14 C 0.132 3.868 15 F -0.103 7.103 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.126 3.874 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.723 9.127 24.896 26.526 hybrid contribution -0.624 -0.024 -0.615 0.876 sum -1.348 9.103 24.282 25.967 Atomic orbital electron populations 1.22159 0.92048 1.04126 1.03819 1.22689 0.96064 0.97385 0.82631 0.87967 1.86617 1.76375 1.41380 1.19532 1.23461 0.74596 0.85985 0.85515 1.90666 1.47853 1.16433 1.84262 1.20186 1.05885 0.97136 0.87859 1.19420 0.95114 0.99100 0.98540 1.20790 0.97251 0.96476 0.91890 1.21174 0.98150 0.97150 1.01750 1.17318 0.95222 0.88767 0.87374 1.91541 1.95937 1.62466 1.61031 1.21008 1.02095 1.01797 0.96225 1.17107 0.86777 0.95613 0.87274 1.91567 1.61661 1.94712 1.62322 1.19753 0.80215 0.86838 0.83785 1.90697 1.45168 1.18409 1.85335 1.48076 1.65257 1.11915 1.07721 1.21837 0.99003 0.82661 1.03546 1.19379 0.96730 0.92092 0.79169 1.21456 0.94782 1.31366 1.09147 0.92306 1.24951 0.96284 0.96154 0.96753 1.69947 1.23147 1.40395 1.19694 0.86423 0.82757 0.79377 0.78745 1.19784 1.20931 1.20828 0.89448 0.90599 0.91290 0.85909 0.85635 0.83560 0.83724 0.83213 0.93415 0.90042 0.92266 0.94610 0.93544 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.19 37.16 0.34 -1.95 16 2 C 0.07 1.17 2.14 -27.88 -0.06 1.11 16 3 H 0.10 1.58 6.31 -51.93 -0.33 1.25 16 4 O -0.32 -5.21 9.47 -45.75 -0.43 -5.65 16 5 C 0.46 6.17 7.92 36.01 0.29 6.45 16 6 O -0.50 -7.62 15.17 -18.75 -0.28 -7.91 16 7 C -0.07 -0.66 5.67 -29.04 -0.16 -0.82 16 8 C -0.12 -1.07 4.43 -104.54 -0.46 -1.54 16 9 C -0.05 -0.31 9.66 -39.60 -0.38 -0.69 16 10 C -0.16 -1.10 10.03 -39.50 -0.40 -1.49 16 11 C 0.13 1.09 7.30 -39.43 -0.29 0.80 16 12 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 13 C -0.19 -1.68 10.01 -39.45 -0.39 -2.07 16 14 C 0.15 1.53 7.13 -39.43 -0.28 1.25 16 15 F -0.12 -1.45 16.66 2.25 0.04 -1.41 16 16 C 0.51 10.91 6.95 -10.99 -0.08 10.84 16 17 O -0.52 -13.41 16.13 -13.54 -0.22 -13.63 16 18 N -0.60 -12.69 2.86 -182.95 -0.52 -13.21 16 19 C 0.07 1.16 9.79 59.85 0.59 1.75 16 20 C 0.24 6.37 5.18 -5.19 -0.03 6.34 16 21 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 25 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.09 1.17 6.33 -51.93 -0.33 0.84 16 30 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 1.02 7.95 -51.93 -0.41 0.61 16 33 H 0.13 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.15 0.59 8.04 -52.49 -0.42 0.17 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 39 H 0.06 0.78 4.92 -51.93 -0.26 0.53 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.37 7.36 -51.93 -0.38 0.98 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -35.14 373.59 -6.82 -41.95 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.04 Total: -2.16 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.74 Total: 6.52 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.21 Total: -38.78 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.94 Total: -27.18 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.14 -6.82 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756621648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.146 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds